Wall clock time and date at job start Wed Apr 1 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38605 * 120.32382 * 2 1 4 4 N 1.31494 * 120.89873 * 179.97438 * 3 2 1 5 5 C 1.32741 * 121.64493 * 0.02621 * 4 3 2 6 6 C 1.48169 * 119.72323 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00208 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99848 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99883 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.08992 * 110.63874 * 307.87772 * 10 9 8 12 12 C 1.55059 * 110.58197 * 184.99868 * 10 9 8 13 13 C 1.55030 * 102.12935 * 204.93083 * 12 10 9 14 14 C 1.53322 * 103.78366 * 20.86698 * 13 12 10 15 15 C 1.52652 * 115.56243 * 133.64213 * 14 13 12 16 16 N 1.47222 * 87.77949 * 90.04529 * 15 14 13 17 17 C 1.36932 * 135.96431 * 206.41651 * 16 15 14 18 18 H 1.08004 * 120.00066 * 6.79093 * 17 16 15 19 19 C 1.38808 * 119.99884 * 186.79269 * 17 16 15 20 20 N 1.31629 * 119.99858 * 172.34298 * 19 17 16 21 21 Si 1.86797 * 120.00274 * 352.34104 * 19 17 16 22 22 H 1.48502 * 109.47471 * 175.35206 * 21 19 17 23 23 H 1.48504 * 109.47042 * 55.35242 * 21 19 17 24 24 H 1.48501 * 109.47081 * 295.35483 * 21 19 17 25 25 C 1.47219 * 88.06699 * 26.66772 * 16 15 14 26 26 O 1.42842 * 108.32807 * 1.60437 * 14 13 12 27 27 C 1.39268 * 120.55688 * 0.25507 * 5 4 3 28 28 C 1.38578 * 120.32604 * 180.02562 * 2 1 3 29 29 C 1.50709 * 120.75408 * 359.97345 * 28 2 1 30 30 H 1.09000 * 109.47086 * 89.99463 * 1 2 3 31 31 H 1.09001 * 109.47622 * 209.99404 * 1 2 3 32 32 H 1.09005 * 109.47552 * 329.99850 * 1 2 3 33 33 H 1.08001 * 119.54686 * 0.03162 * 3 2 1 34 34 H 0.96994 * 119.99774 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47350 * 60.00170 * 9 8 6 36 36 H 1.09006 * 109.47215 * 300.00587 * 9 8 6 37 37 H 1.09008 * 110.87007 * 86.77543 * 12 10 9 38 38 H 1.08998 * 111.05506 * 323.17713 * 12 10 9 39 39 H 1.08993 * 110.56812 * 262.29252 * 13 12 10 40 40 H 1.08997 * 110.68568 * 139.49791 * 13 12 10 41 41 H 1.09002 * 113.50148 * 335.31600 * 15 14 13 42 42 H 1.09005 * 113.56183 * 204.78256 * 15 14 13 43 43 H 0.96991 * 120.00047 * 4.89162 * 20 19 17 44 44 H 1.09004 * 113.49685 * 88.06070 * 25 16 15 45 45 H 1.08993 * 113.49991 * 218.60291 * 25 16 15 46 46 H 1.07990 * 120.47398 * 179.71897 * 27 5 4 47 47 H 1.09002 * 109.46785 * 90.00020 * 29 28 2 48 48 H 1.09000 * 109.47195 * 209.99611 * 29 28 2 49 49 H 1.08998 * 109.47364 * 330.00351 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2294 0.0866 0.0005 6 6 5.7097 0.1512 0.0005 7 8 6.3625 -0.8737 0.0001 8 7 6.3321 1.3466 0.0000 9 6 7.7956 1.4105 0.0006 10 6 8.2423 2.8739 0.0004 11 1 7.7558 3.4240 -0.8050 12 6 9.7846 2.9730 -0.1255 13 6 10.0768 4.3490 0.5264 14 6 8.8402 4.6124 1.3936 15 6 9.1225 5.0966 2.8135 16 7 9.0788 6.4725 2.2916 17 6 9.6223 7.6780 2.6472 18 1 10.3460 7.7291 3.4474 19 6 9.2433 8.8343 1.9793 20 7 9.6474 10.0087 2.4154 21 14 8.1599 8.7238 0.4616 22 1 7.8077 10.0920 0.0041 23 1 6.9192 7.9778 0.7923 24 1 8.8915 8.0138 -0.6182 25 6 8.1896 5.9861 1.2238 26 8 7.9634 3.4906 1.2782 27 6 3.5923 -1.1518 -0.0054 28 6 2.2067 -1.1962 -0.0005 29 6 1.4779 -2.5153 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3634 0.8900 0.5139 33 1 1.6647 2.1305 0.0005 34 1 5.8109 2.1647 0.0000 35 1 8.1814 0.9124 -0.8890 36 1 8.1807 0.9134 0.8910 37 1 10.0901 2.9664 -1.1718 38 1 10.2749 2.1704 0.4254 39 1 10.1804 5.1200 -0.2370 40 1 10.9739 4.2998 1.1436 41 1 10.1043 4.8038 3.1855 42 1 8.3208 4.8731 3.5175 43 1 10.2667 10.0627 3.1599 44 1 7.1341 6.0038 1.4954 45 1 8.3841 6.4441 0.2541 46 1 4.1694 -2.0645 -0.0099 47 1 1.3018 -2.8331 -1.0282 48 1 2.0814 -3.2639 0.5128 49 1 0.5234 -2.4031 0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053639749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:05 Heat of formation + Delta-G solvation = -11.716663 kcal Electronic energy + Delta-G solvation = -29694.246338 eV Core-core repulsion = 25622.202964 eV Total energy + Delta-G solvation = -4072.043374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.84649 -41.57991 -40.18978 -38.44112 -35.96585 -35.47313 -34.49412 -33.43700 -33.13347 -31.03602 -29.54488 -28.91335 -27.88006 -27.24174 -25.32751 -23.80052 -23.69051 -23.07634 -22.38868 -21.20305 -20.78584 -19.53142 -18.86543 -18.14739 -17.70734 -17.49046 -16.71886 -16.53307 -16.34256 -16.25344 -16.10687 -15.84178 -15.40548 -15.21147 -15.11298 -14.78163 -14.53879 -14.25726 -13.96509 -13.75025 -13.67491 -13.64158 -13.57305 -13.37181 -13.21458 -12.74461 -12.72791 -12.68611 -12.47042 -12.42043 -12.27667 -12.04268 -11.74359 -11.49722 -11.39293 -11.33265 -11.04250 -10.55635 -10.51077 -10.35374 -10.27614 -9.89105 -9.25975 -8.69539 -5.51867 -0.41695 0.18358 1.36049 1.46230 1.61870 1.65679 1.99486 2.50817 2.55756 2.78625 2.94875 3.11051 3.22388 3.39779 3.56237 3.60825 3.69298 3.73565 3.86587 3.89215 3.90594 4.08322 4.23529 4.37146 4.38874 4.45231 4.52850 4.57109 4.60995 4.63473 4.66861 4.69402 4.75929 4.80066 4.81584 4.88261 4.89055 4.97797 4.98828 5.08874 5.10969 5.12184 5.20785 5.22083 5.30046 5.37466 5.67911 5.90068 6.00003 6.31200 6.65120 6.75039 7.05038 7.26767 8.20812 8.86295 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002307 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.321511 B =12133.597602 C =13421.757481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C 0.090 3.910 4 N -0.478 5.478 5 C 0.046 3.954 6 C 0.568 3.432 7 O -0.569 6.569 8 N -0.702 5.702 9 C 0.131 3.869 10 C 0.059 3.941 11 H 0.089 0.911 12 C -0.131 4.131 13 C -0.116 4.116 14 C 0.085 3.915 15 C 0.126 3.874 16 N -0.647 5.647 17 C -0.290 4.290 18 H 0.054 0.946 19 C -0.083 4.083 20 N -0.967 5.967 21 Si 1.106 2.894 22 H -0.302 1.302 23 H -0.266 1.266 24 H -0.266 1.266 25 C 0.082 3.918 26 O -0.365 6.365 27 C -0.117 4.117 28 C -0.057 4.057 29 C -0.117 4.117 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.185 0.815 34 H 0.417 0.583 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.247 0.753 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.145 0.855 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 -27.925 -10.854 35.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.070 4.070 4 N -0.190 5.190 5 C -0.090 4.090 6 C 0.354 3.646 7 O -0.449 6.449 8 N -0.352 5.352 9 C 0.008 3.992 10 C 0.002 3.998 11 H 0.107 0.893 12 C -0.169 4.169 13 C -0.154 4.154 14 C 0.044 3.956 15 C 0.001 3.999 16 N -0.378 5.378 17 C -0.417 4.417 18 H 0.072 0.928 19 C -0.275 4.275 20 N -0.612 5.612 21 Si 0.932 3.068 22 H -0.230 1.230 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.043 4.043 26 O -0.283 6.283 27 C -0.138 4.138 28 C -0.064 4.064 29 C -0.173 4.173 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.202 0.798 34 H 0.253 0.747 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.163 0.837 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.071 -26.828 -11.730 34.408 hybrid contribution 0.837 -0.370 1.863 2.076 sum -17.234 -27.198 -9.867 33.676 Atomic orbital electron populations 1.20947 0.87187 1.04858 1.04131 1.21434 0.99657 0.92800 0.97328 1.23222 0.88631 0.99455 0.95686 1.67489 1.10117 1.30201 1.11189 1.20951 0.93395 0.90735 1.03938 1.18154 0.86753 0.83550 0.76110 1.90740 1.66823 1.35002 1.52329 1.45833 1.07998 1.08772 1.72579 1.21514 0.79252 0.94715 1.03697 1.23602 0.96694 0.92771 0.86742 0.89296 1.23139 0.93547 0.96517 1.03694 1.22417 0.96182 0.98195 0.98617 1.23211 0.90630 0.84878 0.96917 1.22531 0.99596 0.83223 0.94593 1.45732 1.55299 1.04928 1.31822 1.19947 1.20889 0.83952 1.16882 0.92831 1.27068 1.03928 0.90409 1.06051 1.71028 1.35960 1.24240 1.29963 0.83288 0.75786 0.74490 0.73204 1.23023 1.19130 1.19234 1.23358 0.94980 0.93173 0.92806 1.88782 1.59836 1.42394 1.37277 1.22104 0.95406 0.98309 0.98001 1.20589 0.92461 0.97651 0.95736 1.20979 1.00912 0.91207 1.04225 0.89054 0.89334 0.89736 0.79818 0.74652 0.88009 0.91134 0.87032 0.88784 0.90588 0.89959 0.92311 0.93760 0.94363 0.93405 0.92718 0.83745 0.89004 0.90530 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 9.65 71.24 0.69 0.16 16 2 C -0.11 -1.33 5.91 -19.70 -0.12 -1.45 16 3 C 0.09 1.44 10.86 84.83 0.92 2.36 16 4 N -0.48 -10.61 9.54 -184.91 -1.76 -12.37 16 5 C 0.05 1.10 6.75 41.89 0.28 1.38 16 6 C 0.57 15.28 7.81 86.88 0.68 15.96 16 7 O -0.57 -17.81 16.32 -3.76 -0.06 -17.87 16 8 N -0.70 -16.98 5.55 -465.64 -2.58 -19.56 16 9 C 0.13 2.85 5.41 86.38 0.47 3.31 16 10 C 0.06 1.34 3.38 31.30 0.11 1.45 16 11 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 12 C -0.13 -2.59 6.60 31.99 0.21 -2.38 16 13 C -0.12 -3.31 6.46 31.40 0.20 -3.11 16 14 C 0.08 2.95 1.66 -10.82 -0.02 2.93 16 15 C 0.13 5.18 8.20 83.40 0.68 5.86 16 16 N -0.65 -32.38 3.66 -739.09 -2.70 -35.08 16 17 C -0.29 -17.19 11.08 84.03 0.93 -16.26 16 18 H 0.05 3.41 8.05 -2.91 -0.02 3.39 16 19 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 20 N -0.97 -63.18 13.70 21.65 0.30 -62.88 16 21 Si 1.11 54.17 25.13 68.60 1.72 55.90 16 22 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 23 H -0.27 -12.03 6.11 99.48 0.61 -11.42 16 24 H -0.27 -11.69 6.63 99.48 0.66 -11.03 16 25 C 0.08 3.46 5.22 83.50 0.44 3.90 16 26 O -0.36 -11.28 11.02 -148.98 -1.64 -12.93 16 27 C -0.12 -2.28 9.34 22.61 0.21 -2.07 16 28 C -0.06 -0.77 5.91 -19.69 -0.12 -0.89 16 29 C -0.12 -0.76 9.67 71.24 0.69 -0.07 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.19 6.06 -2.39 -0.01 0.18 16 32 H 0.08 0.26 8.09 -2.38 -0.02 0.24 16 33 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.42 9.92 7.80 -92.71 -0.72 9.20 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.09 1.65 8.06 -2.39 -0.02 1.63 16 39 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 40 H 0.08 2.36 7.81 -2.39 -0.02 2.34 16 41 H 0.06 2.28 7.91 -2.39 -0.02 2.26 16 42 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.25 16.20 8.73 -92.72 -0.81 15.39 16 44 H 0.05 2.07 7.69 -2.38 -0.02 2.05 16 45 H 0.06 2.28 4.50 -2.39 -0.01 2.27 16 46 H 0.14 2.75 7.64 -2.92 -0.02 2.73 16 47 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.08 0.49 8.10 -2.39 -0.02 0.47 16 49 H 0.10 0.28 6.07 -2.39 -0.01 0.26 16 Total: -1.00 -79.22 393.59 0.06 -79.16 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.06 Total: 19.11 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.72 Total: 6.52 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -6.75 Total: -129.89 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.70 Total: -30.79 kcal Atomic # 14 Polarization: 54.17 SS G_CDS: 1.72 Total: 55.90 kcal Total: -79.22 0.06 -79.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053639749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.444 kcal (2) G-P(sol) polarization free energy of solvation -79.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds