Wall clock time and date at job start Wed Apr 1 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37995 * 120.81810 * 2 1 4 4 C 1.39125 * 119.26541 * 180.02562 * 3 2 1 5 5 O 1.35502 * 119.52803 * 180.02562 * 4 3 2 6 6 N 1.32433 * 120.94725 * 359.97438 * 4 3 2 7 7 C 1.31631 * 121.80037 * 359.70047 * 6 4 3 8 8 C 1.39561 * 120.62918 * 0.58841 * 7 6 4 9 9 C 1.47611 * 120.50220 * 179.69872 * 8 7 6 10 10 O 1.21581 * 120.00042 * 234.80720 * 9 8 7 11 11 N 1.34778 * 119.99949 * 54.80800 * 9 8 7 12 12 C 1.46934 * 120.70037 * 355.96877 * 11 9 8 13 13 C 1.53185 * 108.91879 * 125.85170 * 12 11 9 14 14 C 1.53163 * 109.27311 * 55.23469 * 13 12 11 15 15 C 1.52234 * 109.65945 * 299.82028 * 14 13 12 16 16 C 1.54503 * 110.25303 * 297.05399 * 15 14 13 17 17 C 1.55031 * 101.52258 * 276.23560 * 16 15 14 18 18 N 1.47486 * 104.89924 * 323.64113 * 17 16 15 19 19 C 1.36938 * 125.65405 * 204.04365 * 18 17 16 20 20 H 1.08006 * 119.99414 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00603 * 359.96421 * 19 18 17 22 22 N 1.31613 * 119.99754 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00028 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47538 * 89.99733 * 23 21 19 25 25 H 1.48504 * 109.47033 * 209.99524 * 23 21 19 26 26 H 1.48501 * 109.47084 * 329.99385 * 23 21 19 27 27 C 1.47183 * 108.67696 * 24.00740 * 18 17 16 28 28 C 1.47079 * 120.69861 * 175.99122 * 11 9 8 29 29 H 1.08999 * 109.47089 * 274.40723 * 1 2 3 30 30 H 1.08996 * 109.47693 * 34.41241 * 1 2 3 31 31 H 1.09006 * 109.46918 * 154.41635 * 1 2 3 32 32 H 1.08003 * 120.36472 * 0.02562 * 3 2 1 33 33 H 0.96702 * 114.00057 * 89.99653 * 5 4 3 34 34 H 1.08005 * 119.68497 * 180.31246 * 7 6 4 35 35 H 1.09005 * 109.56198 * 6.02240 * 12 11 9 36 36 H 1.09002 * 109.56207 * 245.68369 * 12 11 9 37 37 H 1.09002 * 109.50672 * 295.29153 * 13 12 11 38 38 H 1.09006 * 109.53761 * 175.19667 * 13 12 11 39 39 H 1.09001 * 109.43799 * 179.76093 * 14 13 12 40 40 H 1.08994 * 109.40691 * 59.86188 * 14 13 12 41 41 H 1.09003 * 111.01184 * 34.29462 * 16 15 14 42 42 H 1.09000 * 111.01759 * 158.17461 * 16 15 14 43 43 H 1.09000 * 110.34802 * 204.78689 * 17 16 15 44 44 H 1.08997 * 110.44485 * 82.54444 * 17 16 15 45 45 H 0.97007 * 120.00267 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.91436 * 239.12277 * 27 18 17 47 47 H 1.09007 * 109.90690 * 117.85938 * 27 18 17 48 48 H 1.08998 * 109.57899 * 112.61973 * 28 11 9 49 49 H 1.08996 * 109.58055 * 352.22658 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 -0.0005 5 8 4.3042 2.3079 0.0000 6 7 4.2547 -0.0064 -0.0005 7 6 3.6205 -1.1599 0.0058 8 6 2.2256 -1.2044 0.0005 9 6 1.5173 -2.4994 0.0010 10 8 0.6965 -2.7437 -0.8621 11 7 1.7804 -3.4111 0.9581 12 6 2.8311 -3.1689 1.9563 13 6 2.2309 -3.3252 3.3570 14 6 1.5753 -4.7043 3.4751 15 6 0.4707 -4.8370 2.4359 16 6 -0.6403 -3.7965 2.7007 17 6 -1.4951 -4.5218 3.7715 18 7 -1.4611 -5.9444 3.3841 19 6 -2.3989 -6.8851 3.7172 20 1 -2.2828 -7.9054 3.3826 21 6 -3.4985 -6.5274 4.4851 22 7 -3.6396 -5.2842 4.8935 23 14 -4.7773 -7.8107 4.9400 24 1 -4.4003 -8.4512 6.2256 25 1 -6.1040 -7.1589 5.0821 26 1 -4.8443 -8.8423 3.8739 27 6 -0.2524 -6.1850 2.5794 28 6 1.0222 -4.6696 1.0252 29 1 -0.3633 0.0790 1.0246 30 1 -0.3634 0.8478 -0.5807 31 1 -0.3633 -0.9270 -0.4438 32 1 1.6934 2.1314 0.0004 33 1 4.5076 2.6442 0.8835 34 1 4.1850 -2.0806 0.0107 35 1 3.2216 -2.1581 1.8373 36 1 3.6361 -3.8912 1.8214 37 1 1.4815 -2.5507 3.5204 38 1 3.0194 -3.2319 4.1039 39 1 1.1510 -4.8201 4.4724 40 1 2.3253 -5.4774 3.3080 41 1 -0.2225 -2.8704 3.0955 42 1 -1.2220 -3.6076 1.7984 43 1 -2.5192 -4.1488 3.7555 44 1 -1.0590 -4.3879 4.7615 45 1 -4.4079 -5.0342 5.4304 46 1 -0.5306 -6.5636 1.5958 47 1 0.3945 -6.9012 3.0862 48 1 1.6804 -5.5056 0.7888 49 1 0.1982 -4.6380 0.3123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054196366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:53 Heat of formation + Delta-G solvation = -6.221561 kcal Electronic energy + Delta-G solvation = -31511.187103 eV Core-core repulsion = 27439.382014 eV Total energy + Delta-G solvation = -4071.805089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.33947 -40.10722 -38.54637 -37.29762 -35.99858 -34.17623 -33.18710 -31.93127 -31.18303 -29.87996 -28.65908 -28.25945 -25.88203 -25.72096 -24.19061 -23.57395 -22.52150 -22.22013 -20.32918 -19.82331 -18.74492 -18.19841 -17.82309 -17.18673 -16.82021 -16.34481 -16.03243 -15.13534 -15.01439 -14.89830 -14.68201 -14.40681 -13.97154 -13.91854 -13.41756 -13.38266 -13.30436 -13.26051 -12.96477 -12.85815 -12.42925 -12.36735 -12.27919 -12.03655 -11.97614 -11.56588 -11.20917 -11.01483 -10.91171 -10.79293 -10.58688 -10.33139 -10.12014 -10.05896 -9.97920 -9.87972 -9.71464 -9.62421 -9.46762 -9.23630 -8.64076 -8.57326 -6.82357 -5.64760 -3.06035 0.35027 0.78968 2.46241 2.79597 3.15248 3.34931 3.39841 3.45058 3.46920 4.15261 4.22919 4.32761 4.49146 4.64616 4.70042 4.84106 4.94617 4.99881 5.09783 5.12816 5.26263 5.27376 5.33856 5.40957 5.42820 5.49170 5.52823 5.65739 5.71828 5.82586 5.87039 5.89545 5.95862 5.99480 6.06886 6.12207 6.25353 6.35462 6.42531 6.44426 6.59839 6.68972 6.79757 6.92231 7.04695 7.29704 7.45134 7.52477 7.63509 7.86705 8.02767 8.36879 9.22719 9.83723 10.48991 11.39011 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.002681 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.825337 B =10442.589406 C =10813.175547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.025 3.975 3 C -0.191 4.191 4 C 0.327 3.673 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.159 3.841 8 C -0.188 4.188 9 C 0.569 3.431 10 O -0.528 6.528 11 N -0.596 5.596 12 C 0.100 3.900 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.084 4.084 16 C -0.130 4.130 17 C 0.155 3.845 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.149 3.851 28 C 0.130 3.870 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.403 0.597 34 H 0.166 0.834 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.010 0.990 45 H 0.251 0.749 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.066 0.934 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.130 12.766 -6.070 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.212 4.212 4 C 0.149 3.851 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.000 4.000 8 C -0.193 4.193 9 C 0.355 3.645 10 O -0.405 6.405 11 N -0.327 5.327 12 C -0.022 4.022 13 C -0.174 4.174 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.169 4.169 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.023 3.977 28 C 0.008 3.992 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.183 0.817 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.358 12.637 -7.024 21.831 hybrid contribution -1.254 -0.514 0.900 1.627 sum 15.104 12.123 -6.124 20.313 Atomic orbital electron populations 1.21129 0.88954 1.05562 1.03736 1.20252 0.97445 0.90585 0.90000 1.21952 0.93729 0.99547 1.05980 1.19306 0.87072 0.85191 0.93527 1.84728 1.75939 1.34105 1.34122 1.67168 1.41877 0.98192 1.15492 1.22697 0.89946 0.95308 0.92013 1.20893 0.95430 0.94644 1.08370 1.17899 0.82061 0.82869 0.81643 1.90797 1.34538 1.78398 1.36785 1.48070 1.36589 1.19165 1.28913 1.21967 0.89848 1.01836 0.88595 1.21993 1.00630 0.99315 0.95425 1.21346 0.96722 0.95566 1.00084 1.21346 0.95618 0.98268 0.93289 1.23018 0.96371 0.96555 1.00954 1.21909 1.00430 0.82985 0.91612 1.44519 1.21836 1.06454 1.60035 1.19074 0.99217 0.90058 1.26543 0.90539 1.24771 0.98789 0.96708 1.00443 1.69810 1.30410 1.15682 1.41206 0.86085 0.80989 0.80255 0.78251 1.21704 1.21695 1.20708 1.21149 0.88934 0.92733 0.94900 1.21620 0.96073 0.83639 0.97849 0.89705 0.90340 0.88554 0.83502 0.73827 0.81674 0.90077 0.90860 0.91000 0.90888 0.90701 0.92188 0.92557 0.92370 0.87949 0.97211 0.93823 0.95755 0.95839 0.91531 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.75 36.01 0.35 -1.07 16 2 C 0.03 0.27 5.94 -103.96 -0.62 -0.35 16 3 C -0.19 -1.74 9.74 -39.34 -0.38 -2.12 16 4 C 0.33 3.22 7.74 -16.96 -0.13 3.09 16 5 O -0.48 -3.87 13.55 -18.20 -0.25 -4.12 16 6 N -0.51 -5.57 10.37 -12.97 -0.13 -5.70 16 7 C 0.16 1.62 8.62 -17.14 -0.15 1.47 16 8 C -0.19 -2.17 4.88 -104.83 -0.51 -2.68 16 9 C 0.57 7.77 6.60 -12.44 -0.08 7.69 16 10 O -0.53 -9.01 14.69 5.29 0.08 -8.94 16 11 N -0.60 -7.43 2.83 -174.33 -0.49 -7.92 16 12 C 0.10 0.97 5.56 -3.71 -0.02 0.95 16 13 C -0.14 -1.48 5.90 -26.55 -0.16 -1.63 16 14 C -0.10 -1.37 4.55 -27.04 -0.12 -1.50 16 15 C -0.08 -1.36 0.55 -154.08 -0.09 -1.44 16 16 C -0.13 -2.42 5.73 -24.87 -0.14 -2.56 16 17 C 0.16 3.69 5.57 -2.43 -0.01 3.68 16 18 N -0.60 -15.13 3.40 -170.23 -0.58 -15.71 16 19 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 20 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.15 3.00 6.43 -3.33 -0.02 2.98 16 28 C 0.13 1.86 4.97 -4.04 -0.02 1.84 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.10 1.25 5.76 -51.93 -0.30 0.96 16 32 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.40 1.15 9.06 45.56 0.41 1.56 16 34 H 0.17 1.34 7.42 -52.48 -0.39 0.95 16 35 H 0.08 0.70 4.75 -51.93 -0.25 0.45 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.95 6.00 -51.93 -0.31 0.64 16 42 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 43 H 0.10 2.79 5.88 -51.93 -0.31 2.49 16 44 H 0.01 0.25 7.76 -51.93 -0.40 -0.15 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 46 H 0.02 0.49 7.80 -51.93 -0.40 0.09 16 47 H 0.02 0.47 7.83 -51.92 -0.41 0.06 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.09 1.58 6.90 -51.93 -0.36 1.22 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.72 377.89 -8.84 -42.56 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.34 Total: 1.61 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.36 Total: 1.67 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.65 Total: -55.49 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.17 Total: -13.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.72 -8.84 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054196366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.337 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds