Wall clock time and date at job start Wed Apr 1 2020 03:33:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.37995 * 120.81810 * 2 1
4 4 C 1.39125 * 119.26541 * 180.02562 * 3 2 1
5 5 O 1.35502 * 119.52803 * 180.02562 * 4 3 2
6 6 N 1.32433 * 120.94725 * 359.97438 * 4 3 2
7 7 C 1.31631 * 121.80037 * 359.70047 * 6 4 3
8 8 C 1.39561 * 120.62918 * 0.58841 * 7 6 4
9 9 C 1.47611 * 120.50220 * 179.69872 * 8 7 6
10 10 O 1.21581 * 120.00042 * 234.80720 * 9 8 7
11 11 N 1.34778 * 119.99949 * 54.80800 * 9 8 7
12 12 C 1.46934 * 120.70037 * 355.96877 * 11 9 8
13 13 C 1.53185 * 108.91879 * 125.85170 * 12 11 9
14 14 C 1.53163 * 109.27311 * 55.23469 * 13 12 11
15 15 C 1.52234 * 109.65945 * 299.82028 * 14 13 12
16 16 C 1.54503 * 110.25303 * 297.05399 * 15 14 13
17 17 C 1.55031 * 101.52258 * 276.23560 * 16 15 14
18 18 N 1.47486 * 104.89924 * 323.64113 * 17 16 15
19 19 C 1.36938 * 125.65405 * 204.04365 * 18 17 16
20 20 H 1.08006 * 119.99414 * 179.97438 * 19 18 17
21 21 C 1.38808 * 120.00603 * 359.96421 * 19 18 17
22 22 N 1.31613 * 119.99754 * 359.97438 * 21 19 18
23 23 Si 1.86796 * 120.00028 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.47538 * 89.99733 * 23 21 19
25 25 H 1.48504 * 109.47033 * 209.99524 * 23 21 19
26 26 H 1.48501 * 109.47084 * 329.99385 * 23 21 19
27 27 C 1.47183 * 108.67696 * 24.00740 * 18 17 16
28 28 C 1.47079 * 120.69861 * 175.99122 * 11 9 8
29 29 H 1.08999 * 109.47089 * 274.40723 * 1 2 3
30 30 H 1.08996 * 109.47693 * 34.41241 * 1 2 3
31 31 H 1.09006 * 109.46918 * 154.41635 * 1 2 3
32 32 H 1.08003 * 120.36472 * 0.02562 * 3 2 1
33 33 H 0.96702 * 114.00057 * 89.99653 * 5 4 3
34 34 H 1.08005 * 119.68497 * 180.31246 * 7 6 4
35 35 H 1.09005 * 109.56198 * 6.02240 * 12 11 9
36 36 H 1.09002 * 109.56207 * 245.68369 * 12 11 9
37 37 H 1.09002 * 109.50672 * 295.29153 * 13 12 11
38 38 H 1.09006 * 109.53761 * 175.19667 * 13 12 11
39 39 H 1.09001 * 109.43799 * 179.76093 * 14 13 12
40 40 H 1.08994 * 109.40691 * 59.86188 * 14 13 12
41 41 H 1.09003 * 111.01184 * 34.29462 * 16 15 14
42 42 H 1.09000 * 111.01759 * 158.17461 * 16 15 14
43 43 H 1.09000 * 110.34802 * 204.78689 * 17 16 15
44 44 H 1.08997 * 110.44485 * 82.54444 * 17 16 15
45 45 H 0.97007 * 120.00267 * 180.02562 * 22 21 19
46 46 H 1.08999 * 109.91436 * 239.12277 * 27 18 17
47 47 H 1.09007 * 109.90690 * 117.85938 * 27 18 17
48 48 H 1.08998 * 109.57899 * 112.61973 * 28 11 9
49 49 H 1.08996 * 109.58055 * 352.22658 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2140 1.1851 0.0000
4 6 3.6047 1.1474 -0.0005
5 8 4.3042 2.3079 0.0000
6 7 4.2547 -0.0064 -0.0005
7 6 3.6205 -1.1599 0.0058
8 6 2.2256 -1.2044 0.0005
9 6 1.5173 -2.4994 0.0010
10 8 0.6965 -2.7437 -0.8621
11 7 1.7804 -3.4111 0.9581
12 6 2.8311 -3.1689 1.9563
13 6 2.2309 -3.3252 3.3570
14 6 1.5753 -4.7043 3.4751
15 6 0.4707 -4.8370 2.4359
16 6 -0.6403 -3.7965 2.7007
17 6 -1.4951 -4.5218 3.7715
18 7 -1.4611 -5.9444 3.3841
19 6 -2.3989 -6.8851 3.7172
20 1 -2.2828 -7.9054 3.3826
21 6 -3.4985 -6.5274 4.4851
22 7 -3.6396 -5.2842 4.8935
23 14 -4.7773 -7.8107 4.9400
24 1 -4.4003 -8.4512 6.2256
25 1 -6.1040 -7.1589 5.0821
26 1 -4.8443 -8.8423 3.8739
27 6 -0.2524 -6.1850 2.5794
28 6 1.0222 -4.6696 1.0252
29 1 -0.3633 0.0790 1.0246
30 1 -0.3634 0.8478 -0.5807
31 1 -0.3633 -0.9270 -0.4438
32 1 1.6934 2.1314 0.0004
33 1 4.5076 2.6442 0.8835
34 1 4.1850 -2.0806 0.0107
35 1 3.2216 -2.1581 1.8373
36 1 3.6361 -3.8912 1.8214
37 1 1.4815 -2.5507 3.5204
38 1 3.0194 -3.2319 4.1039
39 1 1.1510 -4.8201 4.4724
40 1 2.3253 -5.4774 3.3080
41 1 -0.2225 -2.8704 3.0955
42 1 -1.2220 -3.6076 1.7984
43 1 -2.5192 -4.1488 3.7555
44 1 -1.0590 -4.3879 4.7615
45 1 -4.4079 -5.0342 5.4304
46 1 -0.5306 -6.5636 1.5958
47 1 0.3945 -6.9012 3.0862
48 1 1.6804 -5.5056 0.7888
49 1 0.1982 -4.6380 0.3123
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054196366.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:33:53
Heat of formation + Delta-G solvation = -6.221561 kcal
Electronic energy + Delta-G solvation = -31511.187103 eV
Core-core repulsion = 27439.382014 eV
Total energy + Delta-G solvation = -4071.805089 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-41.33947 -40.10722 -38.54637 -37.29762 -35.99858 -34.17623 -33.18710 -31.93127
-31.18303 -29.87996 -28.65908 -28.25945 -25.88203 -25.72096 -24.19061 -23.57395
-22.52150 -22.22013 -20.32918 -19.82331 -18.74492 -18.19841 -17.82309 -17.18673
-16.82021 -16.34481 -16.03243 -15.13534 -15.01439 -14.89830 -14.68201 -14.40681
-13.97154 -13.91854 -13.41756 -13.38266 -13.30436 -13.26051 -12.96477 -12.85815
-12.42925 -12.36735 -12.27919 -12.03655 -11.97614 -11.56588 -11.20917 -11.01483
-10.91171 -10.79293 -10.58688 -10.33139 -10.12014 -10.05896 -9.97920 -9.87972
-9.71464 -9.62421 -9.46762 -9.23630 -8.64076 -8.57326 -6.82357 -5.64760
-3.06035 0.35027 0.78968 2.46241 2.79597 3.15248 3.34931 3.39841
3.45058 3.46920 4.15261 4.22919 4.32761 4.49146 4.64616 4.70042
4.84106 4.94617 4.99881 5.09783 5.12816 5.26263 5.27376 5.33856
5.40957 5.42820 5.49170 5.52823 5.65739 5.71828 5.82586 5.87039
5.89545 5.95862 5.99480 6.06886 6.12207 6.25353 6.35462 6.42531
6.44426 6.59839 6.68972 6.79757 6.92231 7.04695 7.29704 7.45134
7.52477 7.63509 7.86705 8.02767 8.36879 9.22719 9.83723 10.48991
11.39011
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.021019 B = 0.002681 C = 0.002589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.825337 B =10442.589406 C =10813.175547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.025 3.975
3 C -0.191 4.191
4 C 0.327 3.673
5 O -0.481 6.481
6 N -0.508 5.508
7 C 0.159 3.841
8 C -0.188 4.188
9 C 0.569 3.431
10 O -0.528 6.528
11 N -0.596 5.596
12 C 0.100 3.900
13 C -0.136 4.136
14 C -0.100 4.100
15 C -0.084 4.084
16 C -0.130 4.130
17 C 0.155 3.845
18 N -0.602 5.602
19 C -0.221 4.221
20 H 0.077 0.923
21 C -0.012 4.012
22 N -0.922 5.922
23 Si 0.913 3.087
24 H -0.290 1.290
25 H -0.291 1.291
26 H -0.281 1.281
27 C 0.149 3.851
28 C 0.130 3.870
29 H 0.084 0.916
30 H 0.078 0.922
31 H 0.096 0.904
32 H 0.147 0.853
33 H 0.403 0.597
34 H 0.166 0.834
35 H 0.081 0.919
36 H 0.073 0.927
37 H 0.071 0.929
38 H 0.073 0.927
39 H 0.074 0.926
40 H 0.059 0.941
41 H 0.056 0.944
42 H 0.058 0.942
43 H 0.103 0.897
44 H 0.010 0.990
45 H 0.251 0.749
46 H 0.025 0.975
47 H 0.024 0.976
48 H 0.066 0.934
49 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.130 12.766 -6.070 21.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.017 3.983
3 C -0.212 4.212
4 C 0.149 3.851
5 O -0.289 6.289
6 N -0.227 5.227
7 C 0.000 4.000
8 C -0.193 4.193
9 C 0.355 3.645
10 O -0.405 6.405
11 N -0.327 5.327
12 C -0.022 4.022
13 C -0.174 4.174
14 C -0.137 4.137
15 C -0.085 4.085
16 C -0.169 4.169
17 C 0.031 3.969
18 N -0.328 5.328
19 C -0.349 4.349
20 H 0.095 0.905
21 C -0.207 4.207
22 N -0.571 5.571
23 Si 0.744 3.256
24 H -0.217 1.217
25 H -0.217 1.217
26 H -0.207 1.207
27 C 0.023 3.977
28 C 0.008 3.992
29 H 0.103 0.897
30 H 0.097 0.903
31 H 0.114 0.886
32 H 0.165 0.835
33 H 0.262 0.738
34 H 0.183 0.817
35 H 0.099 0.901
36 H 0.091 0.909
37 H 0.090 0.910
38 H 0.091 0.909
39 H 0.093 0.907
40 H 0.078 0.922
41 H 0.074 0.926
42 H 0.076 0.924
43 H 0.121 0.879
44 H 0.028 0.972
45 H 0.062 0.938
46 H 0.042 0.958
47 H 0.042 0.958
48 H 0.085 0.915
49 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 16.358 12.637 -7.024 21.831
hybrid contribution -1.254 -0.514 0.900 1.627
sum 15.104 12.123 -6.124 20.313
Atomic orbital electron populations
1.21129 0.88954 1.05562 1.03736 1.20252 0.97445 0.90585 0.90000
1.21952 0.93729 0.99547 1.05980 1.19306 0.87072 0.85191 0.93527
1.84728 1.75939 1.34105 1.34122 1.67168 1.41877 0.98192 1.15492
1.22697 0.89946 0.95308 0.92013 1.20893 0.95430 0.94644 1.08370
1.17899 0.82061 0.82869 0.81643 1.90797 1.34538 1.78398 1.36785
1.48070 1.36589 1.19165 1.28913 1.21967 0.89848 1.01836 0.88595
1.21993 1.00630 0.99315 0.95425 1.21346 0.96722 0.95566 1.00084
1.21346 0.95618 0.98268 0.93289 1.23018 0.96371 0.96555 1.00954
1.21909 1.00430 0.82985 0.91612 1.44519 1.21836 1.06454 1.60035
1.19074 0.99217 0.90058 1.26543 0.90539 1.24771 0.98789 0.96708
1.00443 1.69810 1.30410 1.15682 1.41206 0.86085 0.80989 0.80255
0.78251 1.21704 1.21695 1.20708 1.21149 0.88934 0.92733 0.94900
1.21620 0.96073 0.83639 0.97849 0.89705 0.90340 0.88554 0.83502
0.73827 0.81674 0.90077 0.90860 0.91000 0.90888 0.90701 0.92188
0.92557 0.92370 0.87949 0.97211 0.93823 0.95755 0.95839 0.91531
0.88671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.42 9.75 36.01 0.35 -1.07 16
2 C 0.03 0.27 5.94 -103.96 -0.62 -0.35 16
3 C -0.19 -1.74 9.74 -39.34 -0.38 -2.12 16
4 C 0.33 3.22 7.74 -16.96 -0.13 3.09 16
5 O -0.48 -3.87 13.55 -18.20 -0.25 -4.12 16
6 N -0.51 -5.57 10.37 -12.97 -0.13 -5.70 16
7 C 0.16 1.62 8.62 -17.14 -0.15 1.47 16
8 C -0.19 -2.17 4.88 -104.83 -0.51 -2.68 16
9 C 0.57 7.77 6.60 -12.44 -0.08 7.69 16
10 O -0.53 -9.01 14.69 5.29 0.08 -8.94 16
11 N -0.60 -7.43 2.83 -174.33 -0.49 -7.92 16
12 C 0.10 0.97 5.56 -3.71 -0.02 0.95 16
13 C -0.14 -1.48 5.90 -26.55 -0.16 -1.63 16
14 C -0.10 -1.37 4.55 -27.04 -0.12 -1.50 16
15 C -0.08 -1.36 0.55 -154.08 -0.09 -1.44 16
16 C -0.13 -2.42 5.73 -24.87 -0.14 -2.56 16
17 C 0.16 3.69 5.57 -2.43 -0.01 3.68 16
18 N -0.60 -15.13 3.40 -170.23 -0.58 -15.71 16
19 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16
20 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16
21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16
22 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16
23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16
24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
27 C 0.15 3.00 6.43 -3.33 -0.02 2.98 16
28 C 0.13 1.86 4.97 -4.04 -0.02 1.84 16
29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
30 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16
31 H 0.10 1.25 5.76 -51.93 -0.30 0.96 16
32 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16
33 H 0.40 1.15 9.06 45.56 0.41 1.56 16
34 H 0.17 1.34 7.42 -52.48 -0.39 0.95 16
35 H 0.08 0.70 4.75 -51.93 -0.25 0.45 16
36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16
38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
39 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16
40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
41 H 0.06 0.95 6.00 -51.93 -0.31 0.64 16
42 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16
43 H 0.10 2.79 5.88 -51.93 -0.31 2.49 16
44 H 0.01 0.25 7.76 -51.93 -0.40 -0.15 16
45 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16
46 H 0.02 0.49 7.80 -51.93 -0.40 0.09 16
47 H 0.02 0.47 7.83 -51.92 -0.41 0.06 16
48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
49 H 0.09 1.58 6.90 -51.93 -0.36 1.22 16
LS Contribution 377.89 15.07 5.69 5.69
Total: -1.00 -33.72 377.89 -8.84 -42.56
By element:
Atomic # 1 Polarization: 7.95 SS G_CDS: -6.34 Total: 1.61 kcal
Atomic # 6 Polarization: 4.03 SS G_CDS: -2.36 Total: 1.67 kcal
Atomic # 7 Polarization: -54.84 SS G_CDS: -0.65 Total: -55.49 kcal
Atomic # 8 Polarization: -12.89 SS G_CDS: -0.17 Total: -13.06 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -33.72 -8.84 -42.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054196366.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.337 kcal
(2) G-P(sol) polarization free energy of solvation -33.720 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds