Wall clock time and date at job start Wed Apr 1 2020 03:33:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.37995 * 120.81810 * 2 1
4 4 C 1.39125 * 119.26541 * 180.02562 * 3 2 1
5 5 O 1.35502 * 119.52803 * 180.02562 * 4 3 2
6 6 N 1.32433 * 120.94725 * 359.97438 * 4 3 2
7 7 C 1.31631 * 121.80037 * 359.70047 * 6 4 3
8 8 C 1.39561 * 120.62918 * 0.58841 * 7 6 4
9 9 C 1.47611 * 120.50220 * 179.69872 * 8 7 6
10 10 O 1.21581 * 120.00042 * 234.80720 * 9 8 7
11 11 N 1.34778 * 119.99949 * 54.80800 * 9 8 7
12 12 C 1.46934 * 120.70037 * 355.96877 * 11 9 8
13 13 C 1.53185 * 108.91879 * 125.85170 * 12 11 9
14 14 C 1.53163 * 109.27311 * 55.23469 * 13 12 11
15 15 C 1.52234 * 109.65945 * 299.82028 * 14 13 12
16 16 C 1.54503 * 110.25303 * 297.05399 * 15 14 13
17 17 C 1.55031 * 101.52258 * 276.23560 * 16 15 14
18 18 N 1.47486 * 104.89924 * 323.64113 * 17 16 15
19 19 C 1.36938 * 125.65405 * 204.04365 * 18 17 16
20 20 H 1.08006 * 119.99414 * 179.97438 * 19 18 17
21 21 C 1.38808 * 120.00603 * 359.96421 * 19 18 17
22 22 N 1.31613 * 119.99754 * 359.97438 * 21 19 18
23 23 Si 1.86796 * 120.00028 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.47538 * 89.99733 * 23 21 19
25 25 H 1.48504 * 109.47033 * 209.99524 * 23 21 19
26 26 H 1.48501 * 109.47084 * 329.99385 * 23 21 19
27 27 C 1.47183 * 108.67696 * 24.00740 * 18 17 16
28 28 C 1.47079 * 120.69861 * 175.99122 * 11 9 8
29 29 H 1.08999 * 109.47089 * 274.40723 * 1 2 3
30 30 H 1.08996 * 109.47693 * 34.41241 * 1 2 3
31 31 H 1.09006 * 109.46918 * 154.41635 * 1 2 3
32 32 H 1.08003 * 120.36472 * 0.02562 * 3 2 1
33 33 H 0.96702 * 114.00057 * 89.99653 * 5 4 3
34 34 H 1.08005 * 119.68497 * 180.31246 * 7 6 4
35 35 H 1.09005 * 109.56198 * 6.02240 * 12 11 9
36 36 H 1.09002 * 109.56207 * 245.68369 * 12 11 9
37 37 H 1.09002 * 109.50672 * 295.29153 * 13 12 11
38 38 H 1.09006 * 109.53761 * 175.19667 * 13 12 11
39 39 H 1.09001 * 109.43799 * 179.76093 * 14 13 12
40 40 H 1.08994 * 109.40691 * 59.86188 * 14 13 12
41 41 H 1.09003 * 111.01184 * 34.29462 * 16 15 14
42 42 H 1.09000 * 111.01759 * 158.17461 * 16 15 14
43 43 H 1.09000 * 110.34802 * 204.78689 * 17 16 15
44 44 H 1.08997 * 110.44485 * 82.54444 * 17 16 15
45 45 H 0.97007 * 120.00267 * 180.02562 * 22 21 19
46 46 H 1.08999 * 109.91436 * 239.12277 * 27 18 17
47 47 H 1.09007 * 109.90690 * 117.85938 * 27 18 17
48 48 H 1.08998 * 109.57899 * 112.61973 * 28 11 9
49 49 H 1.08996 * 109.58055 * 352.22658 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2140 1.1851 0.0000
4 6 3.6047 1.1474 -0.0005
5 8 4.3042 2.3079 0.0000
6 7 4.2547 -0.0064 -0.0005
7 6 3.6205 -1.1599 0.0058
8 6 2.2256 -1.2044 0.0005
9 6 1.5173 -2.4994 0.0010
10 8 0.6965 -2.7437 -0.8621
11 7 1.7804 -3.4111 0.9581
12 6 2.8311 -3.1689 1.9563
13 6 2.2309 -3.3252 3.3570
14 6 1.5753 -4.7043 3.4751
15 6 0.4707 -4.8370 2.4359
16 6 -0.6403 -3.7965 2.7007
17 6 -1.4951 -4.5218 3.7715
18 7 -1.4611 -5.9444 3.3841
19 6 -2.3989 -6.8851 3.7172
20 1 -2.2828 -7.9054 3.3826
21 6 -3.4985 -6.5274 4.4851
22 7 -3.6396 -5.2842 4.8935
23 14 -4.7773 -7.8107 4.9400
24 1 -4.4003 -8.4512 6.2256
25 1 -6.1040 -7.1589 5.0821
26 1 -4.8443 -8.8423 3.8739
27 6 -0.2524 -6.1850 2.5794
28 6 1.0222 -4.6696 1.0252
29 1 -0.3633 0.0790 1.0246
30 1 -0.3634 0.8478 -0.5807
31 1 -0.3633 -0.9270 -0.4438
32 1 1.6934 2.1314 0.0004
33 1 4.5076 2.6442 0.8835
34 1 4.1850 -2.0806 0.0107
35 1 3.2216 -2.1581 1.8373
36 1 3.6361 -3.8912 1.8214
37 1 1.4815 -2.5507 3.5204
38 1 3.0194 -3.2319 4.1039
39 1 1.1510 -4.8201 4.4724
40 1 2.3253 -5.4774 3.3080
41 1 -0.2225 -2.8704 3.0955
42 1 -1.2220 -3.6076 1.7984
43 1 -2.5192 -4.1488 3.7555
44 1 -1.0590 -4.3879 4.7615
45 1 -4.4079 -5.0342 5.4304
46 1 -0.5306 -6.5636 1.5958
47 1 0.3945 -6.9012 3.0862
48 1 1.6804 -5.5056 0.7888
49 1 0.1982 -4.6380 0.3123
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054196366.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:33:52
Heat of formation + Delta-G solvation = -31.154084 kcal
Electronic energy + Delta-G solvation = -31512.268258 eV
Core-core repulsion = 27439.382014 eV
Total energy + Delta-G solvation = -4072.886244 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-42.22644 -41.13494 -39.75602 -38.02503 -37.37393 -34.99661 -34.79589 -33.17138
-32.31623 -31.26350 -30.33209 -29.08044 -27.39699 -26.85288 -25.49052 -24.77764
-23.37650 -23.29038 -22.03247 -20.97331 -19.57457 -19.40887 -18.73838 -18.64555
-18.01411 -17.31846 -16.96367 -16.75312 -16.31584 -16.09168 -15.74911 -15.56462
-15.20116 -14.84641 -14.71469 -14.65559 -14.31346 -14.23475 -14.06840 -13.84249
-13.72389 -13.58533 -13.40063 -13.16876 -13.14394 -12.91247 -12.77769 -12.73258
-12.33188 -12.19750 -12.08354 -11.90179 -11.68887 -11.49021 -11.41589 -11.12792
-11.09927 -10.73602 -10.65578 -10.48186 -10.00289 -9.62849 -8.87517 -7.77182
-5.20900 -0.40562 0.04773 1.45281 1.47197 1.47514 1.55983 1.86585
2.43452 2.49518 2.62939 3.29927 3.33488 3.51309 3.54806 3.62771
3.67976 3.82120 3.89301 3.95601 4.11845 4.18380 4.23333 4.29888
4.36433 4.47669 4.54569 4.59256 4.63145 4.64194 4.67588 4.72942
4.78915 4.85771 4.90330 4.92242 4.96996 5.01271 5.16862 5.19656
5.23533 5.37598 5.42497 5.46956 5.48303 5.52049 5.64894 5.82495
6.29906 6.32180 6.54594 6.78233 7.01732 7.11084 7.79072 8.43483
9.24699
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.021019 B = 0.002681 C = 0.002589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.825337 B =10442.589406 C =10813.175547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.016 3.984
3 C -0.185 4.185
4 C 0.330 3.670
5 O -0.487 6.487
6 N -0.524 5.524
7 C 0.166 3.834
8 C -0.204 4.204
9 C 0.569 3.431
10 O -0.571 6.571
11 N -0.593 5.593
12 C 0.100 3.900
13 C -0.129 4.129
14 C -0.096 4.096
15 C -0.069 4.069
16 C -0.112 4.112
17 C 0.163 3.837
18 N -0.625 5.625
19 C -0.236 4.236
20 H 0.080 0.920
21 C -0.069 4.069
22 N -0.949 5.949
23 Si 0.979 3.021
24 H -0.285 1.285
25 H -0.295 1.295
26 H -0.270 1.270
27 C 0.143 3.857
28 C 0.138 3.862
29 H 0.088 0.912
30 H 0.098 0.902
31 H 0.065 0.935
32 H 0.171 0.829
33 H 0.426 0.574
34 H 0.187 0.813
35 H 0.097 0.903
36 H 0.104 0.896
37 H 0.056 0.944
38 H 0.103 0.897
39 H 0.046 0.954
40 H 0.083 0.917
41 H 0.076 0.924
42 H 0.040 0.960
43 H 0.063 0.937
44 H -0.010 1.010
45 H 0.246 0.754
46 H 0.022 0.978
47 H 0.033 0.967
48 H 0.092 0.908
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.967 13.495 -6.231 24.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.008 3.992
3 C -0.206 4.206
4 C 0.152 3.848
5 O -0.299 6.299
6 N -0.244 5.244
7 C 0.008 3.992
8 C -0.209 4.209
9 C 0.357 3.643
10 O -0.452 6.452
11 N -0.323 5.323
12 C -0.021 4.021
13 C -0.166 4.166
14 C -0.134 4.134
15 C -0.070 4.070
16 C -0.151 4.151
17 C 0.038 3.962
18 N -0.351 5.351
19 C -0.365 4.365
20 H 0.098 0.902
21 C -0.261 4.261
22 N -0.599 5.599
23 Si 0.808 3.192
24 H -0.212 1.212
25 H -0.221 1.221
26 H -0.195 1.195
27 C 0.018 3.982
28 C 0.016 3.984
29 H 0.107 0.893
30 H 0.116 0.884
31 H 0.084 0.916
32 H 0.189 0.811
33 H 0.288 0.712
34 H 0.204 0.796
35 H 0.115 0.885
36 H 0.122 0.878
37 H 0.074 0.926
38 H 0.121 0.879
39 H 0.065 0.935
40 H 0.102 0.898
41 H 0.094 0.906
42 H 0.058 0.942
43 H 0.081 0.919
44 H 0.008 0.992
45 H 0.055 0.945
46 H 0.040 0.960
47 H 0.051 0.949
48 H 0.110 0.890
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 19.250 13.376 -7.166 24.512
hybrid contribution -2.107 -0.686 0.954 2.413
sum 17.143 12.690 -6.212 22.215
Atomic orbital electron populations
1.21075 0.89262 1.04741 1.04025 1.20370 0.97449 0.91099 0.90291
1.22106 0.93561 0.99839 1.05077 1.19483 0.87442 0.85449 0.92436
1.84680 1.75654 1.33323 1.36208 1.67249 1.42186 0.98653 1.16292
1.22942 0.89292 0.95980 0.90974 1.20769 0.96068 0.93597 1.10479
1.18236 0.81437 0.83500 0.81112 1.90778 1.36528 1.79234 1.38616
1.48109 1.36723 1.18189 1.29300 1.22221 0.89404 1.03834 0.86662
1.21956 1.00932 0.96538 0.97219 1.21316 0.96235 0.98488 0.97330
1.21241 0.95395 0.94690 0.95697 1.22774 0.96340 0.97629 0.98309
1.21623 0.98957 0.83325 0.92342 1.44819 1.23142 1.06598 1.60537
1.19459 0.99975 0.90832 1.26280 0.90177 1.25620 1.00873 0.98680
1.00942 1.70077 1.30686 1.17353 1.41815 0.85061 0.78042 0.78030
0.78108 1.21241 1.22107 1.19534 1.21362 0.87720 0.95282 0.93872
1.21368 0.96107 0.85590 0.95383 0.89330 0.88381 0.91648 0.81148
0.71159 0.79608 0.88455 0.87811 0.92562 0.87889 0.93475 0.89797
0.90582 0.94166 0.91943 0.99237 0.94472 0.95988 0.94935 0.89040
0.91431
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.73 9.75 71.24 0.69 -2.04 16
2 C 0.02 0.32 5.94 -19.43 -0.12 0.20 16
3 C -0.19 -2.89 9.74 22.43 0.22 -2.68 16
4 C 0.33 5.56 7.74 84.82 0.66 6.21 16
5 O -0.49 -6.34 13.55 -88.03 -1.19 -7.54 16
6 N -0.52 -9.98 10.37 -307.80 -3.19 -13.17 16
7 C 0.17 2.94 8.62 85.04 0.73 3.67 16
8 C -0.20 -4.37 4.88 -20.00 -0.10 -4.47 16
9 C 0.57 15.13 6.60 86.72 0.57 15.71 16
10 O -0.57 -19.98 14.69 -3.97 -0.06 -20.04 16
11 N -0.59 -13.69 2.83 -823.71 -2.33 -16.02 16
12 C 0.10 1.56 5.56 86.36 0.48 2.04 16
13 C -0.13 -2.40 5.90 30.71 0.18 -2.22 16
14 C -0.10 -2.46 4.55 30.40 0.14 -2.32 16
15 C -0.07 -2.20 0.55 -51.91 -0.03 -2.23 16
16 C -0.11 -4.29 5.73 31.80 0.18 -4.11 16
17 C 0.16 8.11 5.57 86.89 0.48 8.60 16
18 N -0.62 -32.45 3.40 -692.50 -2.36 -34.80 16
19 C -0.24 -13.42 10.28 84.03 0.86 -12.55 16
20 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16
21 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16
22 N -0.95 -57.34 10.09 21.65 0.22 -57.12 16
23 Si 0.98 46.25 29.55 68.60 2.03 48.28 16
24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16
25 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16
26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
27 C 0.14 5.79 6.43 86.47 0.56 6.34 16
28 C 0.14 3.81 4.97 86.07 0.43 4.24 16
29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
30 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16
31 H 0.06 1.77 5.76 -2.38 -0.01 1.76 16
32 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16
33 H 0.43 1.02 9.06 -74.06 -0.67 0.35 16
34 H 0.19 2.35 7.42 -2.91 -0.02 2.32 16
35 H 0.10 1.29 4.75 -2.38 -0.01 1.28 16
36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
37 H 0.06 1.24 6.23 -2.39 -0.01 1.23 16
38 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16
39 H 0.05 1.49 7.49 -2.39 -0.02 1.47 16
40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
41 H 0.08 2.59 6.00 -2.39 -0.01 2.58 16
42 H 0.04 1.67 7.91 -2.39 -0.02 1.65 16
43 H 0.06 3.63 5.88 -2.39 -0.01 3.62 16
44 H -0.01 -0.55 7.76 -2.39 -0.02 -0.56 16
45 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16
46 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16
47 H 0.03 1.27 7.83 -2.38 -0.02 1.25 16
48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
49 H 0.07 2.28 6.90 -2.39 -0.02 2.27 16
Total: -1.00 -77.29 377.89 -0.15 -77.44
By element:
Atomic # 1 Polarization: 11.73 SS G_CDS: 0.32 Total: 12.05 kcal
Atomic # 6 Polarization: 4.51 SS G_CDS: 6.41 Total: 10.92 kcal
Atomic # 7 Polarization: -113.46 SS G_CDS: -7.66 Total: -121.12 kcal
Atomic # 8 Polarization: -26.33 SS G_CDS: -1.25 Total: -27.58 kcal
Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal
Total: -77.29 -0.15 -77.44 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054196366.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.287 kcal
(2) G-P(sol) polarization free energy of solvation -77.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds