Wall clock time and date at job start Wed Apr 1 2020 03:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37995 * 120.81810 * 2 1 4 4 C 1.39125 * 119.26541 * 180.02562 * 3 2 1 5 5 O 1.35502 * 119.52803 * 180.02562 * 4 3 2 6 6 N 1.32433 * 120.94725 * 359.97438 * 4 3 2 7 7 C 1.31631 * 121.80037 * 359.70047 * 6 4 3 8 8 C 1.39561 * 120.62918 * 0.58841 * 7 6 4 9 9 C 1.47611 * 120.50220 * 179.69872 * 8 7 6 10 10 O 1.21581 * 120.00042 * 234.80720 * 9 8 7 11 11 N 1.34778 * 119.99949 * 54.80800 * 9 8 7 12 12 C 1.46934 * 120.70037 * 355.96877 * 11 9 8 13 13 C 1.53185 * 108.91879 * 125.85170 * 12 11 9 14 14 C 1.53163 * 109.27311 * 55.23469 * 13 12 11 15 15 C 1.52234 * 109.65945 * 299.82028 * 14 13 12 16 16 C 1.54503 * 110.25303 * 297.05399 * 15 14 13 17 17 C 1.55031 * 101.52258 * 276.23560 * 16 15 14 18 18 N 1.47486 * 104.89924 * 323.64113 * 17 16 15 19 19 C 1.36938 * 125.65405 * 204.04365 * 18 17 16 20 20 H 1.08006 * 119.99414 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00603 * 359.96421 * 19 18 17 22 22 N 1.31613 * 119.99754 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00028 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47538 * 89.99733 * 23 21 19 25 25 H 1.48504 * 109.47033 * 209.99524 * 23 21 19 26 26 H 1.48501 * 109.47084 * 329.99385 * 23 21 19 27 27 C 1.47183 * 108.67696 * 24.00740 * 18 17 16 28 28 C 1.47079 * 120.69861 * 175.99122 * 11 9 8 29 29 H 1.08999 * 109.47089 * 274.40723 * 1 2 3 30 30 H 1.08996 * 109.47693 * 34.41241 * 1 2 3 31 31 H 1.09006 * 109.46918 * 154.41635 * 1 2 3 32 32 H 1.08003 * 120.36472 * 0.02562 * 3 2 1 33 33 H 0.96702 * 114.00057 * 89.99653 * 5 4 3 34 34 H 1.08005 * 119.68497 * 180.31246 * 7 6 4 35 35 H 1.09005 * 109.56198 * 6.02240 * 12 11 9 36 36 H 1.09002 * 109.56207 * 245.68369 * 12 11 9 37 37 H 1.09002 * 109.50672 * 295.29153 * 13 12 11 38 38 H 1.09006 * 109.53761 * 175.19667 * 13 12 11 39 39 H 1.09001 * 109.43799 * 179.76093 * 14 13 12 40 40 H 1.08994 * 109.40691 * 59.86188 * 14 13 12 41 41 H 1.09003 * 111.01184 * 34.29462 * 16 15 14 42 42 H 1.09000 * 111.01759 * 158.17461 * 16 15 14 43 43 H 1.09000 * 110.34802 * 204.78689 * 17 16 15 44 44 H 1.08997 * 110.44485 * 82.54444 * 17 16 15 45 45 H 0.97007 * 120.00267 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.91436 * 239.12277 * 27 18 17 47 47 H 1.09007 * 109.90690 * 117.85938 * 27 18 17 48 48 H 1.08998 * 109.57899 * 112.61973 * 28 11 9 49 49 H 1.08996 * 109.58055 * 352.22658 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 -0.0005 5 8 4.3042 2.3079 0.0000 6 7 4.2547 -0.0064 -0.0005 7 6 3.6205 -1.1599 0.0058 8 6 2.2256 -1.2044 0.0005 9 6 1.5173 -2.4994 0.0010 10 8 0.6965 -2.7437 -0.8621 11 7 1.7804 -3.4111 0.9581 12 6 2.8311 -3.1689 1.9563 13 6 2.2309 -3.3252 3.3570 14 6 1.5753 -4.7043 3.4751 15 6 0.4707 -4.8370 2.4359 16 6 -0.6403 -3.7965 2.7007 17 6 -1.4951 -4.5218 3.7715 18 7 -1.4611 -5.9444 3.3841 19 6 -2.3989 -6.8851 3.7172 20 1 -2.2828 -7.9054 3.3826 21 6 -3.4985 -6.5274 4.4851 22 7 -3.6396 -5.2842 4.8935 23 14 -4.7773 -7.8107 4.9400 24 1 -4.4003 -8.4512 6.2256 25 1 -6.1040 -7.1589 5.0821 26 1 -4.8443 -8.8423 3.8739 27 6 -0.2524 -6.1850 2.5794 28 6 1.0222 -4.6696 1.0252 29 1 -0.3633 0.0790 1.0246 30 1 -0.3634 0.8478 -0.5807 31 1 -0.3633 -0.9270 -0.4438 32 1 1.6934 2.1314 0.0004 33 1 4.5076 2.6442 0.8835 34 1 4.1850 -2.0806 0.0107 35 1 3.2216 -2.1581 1.8373 36 1 3.6361 -3.8912 1.8214 37 1 1.4815 -2.5507 3.5204 38 1 3.0194 -3.2319 4.1039 39 1 1.1510 -4.8201 4.4724 40 1 2.3253 -5.4774 3.3080 41 1 -0.2225 -2.8704 3.0955 42 1 -1.2220 -3.6076 1.7984 43 1 -2.5192 -4.1488 3.7555 44 1 -1.0590 -4.3879 4.7615 45 1 -4.4079 -5.0342 5.4304 46 1 -0.5306 -6.5636 1.5958 47 1 0.3945 -6.9012 3.0862 48 1 1.6804 -5.5056 0.7888 49 1 0.1982 -4.6380 0.3123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054196366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:52 Heat of formation + Delta-G solvation = -31.154084 kcal Electronic energy + Delta-G solvation = -31512.268258 eV Core-core repulsion = 27439.382014 eV Total energy + Delta-G solvation = -4072.886244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.22644 -41.13494 -39.75602 -38.02503 -37.37393 -34.99661 -34.79589 -33.17138 -32.31623 -31.26350 -30.33209 -29.08044 -27.39699 -26.85288 -25.49052 -24.77764 -23.37650 -23.29038 -22.03247 -20.97331 -19.57457 -19.40887 -18.73838 -18.64555 -18.01411 -17.31846 -16.96367 -16.75312 -16.31584 -16.09168 -15.74911 -15.56462 -15.20116 -14.84641 -14.71469 -14.65559 -14.31346 -14.23475 -14.06840 -13.84249 -13.72389 -13.58533 -13.40063 -13.16876 -13.14394 -12.91247 -12.77769 -12.73258 -12.33188 -12.19750 -12.08354 -11.90179 -11.68887 -11.49021 -11.41589 -11.12792 -11.09927 -10.73602 -10.65578 -10.48186 -10.00289 -9.62849 -8.87517 -7.77182 -5.20900 -0.40562 0.04773 1.45281 1.47197 1.47514 1.55983 1.86585 2.43452 2.49518 2.62939 3.29927 3.33488 3.51309 3.54806 3.62771 3.67976 3.82120 3.89301 3.95601 4.11845 4.18380 4.23333 4.29888 4.36433 4.47669 4.54569 4.59256 4.63145 4.64194 4.67588 4.72942 4.78915 4.85771 4.90330 4.92242 4.96996 5.01271 5.16862 5.19656 5.23533 5.37598 5.42497 5.46956 5.48303 5.52049 5.64894 5.82495 6.29906 6.32180 6.54594 6.78233 7.01732 7.11084 7.79072 8.43483 9.24699 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.002681 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.825337 B =10442.589406 C =10813.175547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 C -0.185 4.185 4 C 0.330 3.670 5 O -0.487 6.487 6 N -0.524 5.524 7 C 0.166 3.834 8 C -0.204 4.204 9 C 0.569 3.431 10 O -0.571 6.571 11 N -0.593 5.593 12 C 0.100 3.900 13 C -0.129 4.129 14 C -0.096 4.096 15 C -0.069 4.069 16 C -0.112 4.112 17 C 0.163 3.837 18 N -0.625 5.625 19 C -0.236 4.236 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.270 1.270 27 C 0.143 3.857 28 C 0.138 3.862 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.171 0.829 33 H 0.426 0.574 34 H 0.187 0.813 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.063 0.937 44 H -0.010 1.010 45 H 0.246 0.754 46 H 0.022 0.978 47 H 0.033 0.967 48 H 0.092 0.908 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.967 13.495 -6.231 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 C -0.206 4.206 4 C 0.152 3.848 5 O -0.299 6.299 6 N -0.244 5.244 7 C 0.008 3.992 8 C -0.209 4.209 9 C 0.357 3.643 10 O -0.452 6.452 11 N -0.323 5.323 12 C -0.021 4.021 13 C -0.166 4.166 14 C -0.134 4.134 15 C -0.070 4.070 16 C -0.151 4.151 17 C 0.038 3.962 18 N -0.351 5.351 19 C -0.365 4.365 20 H 0.098 0.902 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.195 1.195 27 C 0.018 3.982 28 C 0.016 3.984 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.288 0.712 34 H 0.204 0.796 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.008 0.992 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.051 0.949 48 H 0.110 0.890 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.250 13.376 -7.166 24.512 hybrid contribution -2.107 -0.686 0.954 2.413 sum 17.143 12.690 -6.212 22.215 Atomic orbital electron populations 1.21075 0.89262 1.04741 1.04025 1.20370 0.97449 0.91099 0.90291 1.22106 0.93561 0.99839 1.05077 1.19483 0.87442 0.85449 0.92436 1.84680 1.75654 1.33323 1.36208 1.67249 1.42186 0.98653 1.16292 1.22942 0.89292 0.95980 0.90974 1.20769 0.96068 0.93597 1.10479 1.18236 0.81437 0.83500 0.81112 1.90778 1.36528 1.79234 1.38616 1.48109 1.36723 1.18189 1.29300 1.22221 0.89404 1.03834 0.86662 1.21956 1.00932 0.96538 0.97219 1.21316 0.96235 0.98488 0.97330 1.21241 0.95395 0.94690 0.95697 1.22774 0.96340 0.97629 0.98309 1.21623 0.98957 0.83325 0.92342 1.44819 1.23142 1.06598 1.60537 1.19459 0.99975 0.90832 1.26280 0.90177 1.25620 1.00873 0.98680 1.00942 1.70077 1.30686 1.17353 1.41815 0.85061 0.78042 0.78030 0.78108 1.21241 1.22107 1.19534 1.21362 0.87720 0.95282 0.93872 1.21368 0.96107 0.85590 0.95383 0.89330 0.88381 0.91648 0.81148 0.71159 0.79608 0.88455 0.87811 0.92562 0.87889 0.93475 0.89797 0.90582 0.94166 0.91943 0.99237 0.94472 0.95988 0.94935 0.89040 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.75 71.24 0.69 -2.04 16 2 C 0.02 0.32 5.94 -19.43 -0.12 0.20 16 3 C -0.19 -2.89 9.74 22.43 0.22 -2.68 16 4 C 0.33 5.56 7.74 84.82 0.66 6.21 16 5 O -0.49 -6.34 13.55 -88.03 -1.19 -7.54 16 6 N -0.52 -9.98 10.37 -307.80 -3.19 -13.17 16 7 C 0.17 2.94 8.62 85.04 0.73 3.67 16 8 C -0.20 -4.37 4.88 -20.00 -0.10 -4.47 16 9 C 0.57 15.13 6.60 86.72 0.57 15.71 16 10 O -0.57 -19.98 14.69 -3.97 -0.06 -20.04 16 11 N -0.59 -13.69 2.83 -823.71 -2.33 -16.02 16 12 C 0.10 1.56 5.56 86.36 0.48 2.04 16 13 C -0.13 -2.40 5.90 30.71 0.18 -2.22 16 14 C -0.10 -2.46 4.55 30.40 0.14 -2.32 16 15 C -0.07 -2.20 0.55 -51.91 -0.03 -2.23 16 16 C -0.11 -4.29 5.73 31.80 0.18 -4.11 16 17 C 0.16 8.11 5.57 86.89 0.48 8.60 16 18 N -0.62 -32.45 3.40 -692.50 -2.36 -34.80 16 19 C -0.24 -13.42 10.28 84.03 0.86 -12.55 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 21 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 22 N -0.95 -57.34 10.09 21.65 0.22 -57.12 16 23 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 C 0.14 5.79 6.43 86.47 0.56 6.34 16 28 C 0.14 3.81 4.97 86.07 0.43 4.24 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.06 1.77 5.76 -2.38 -0.01 1.76 16 32 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.43 1.02 9.06 -74.06 -0.67 0.35 16 34 H 0.19 2.35 7.42 -2.91 -0.02 2.32 16 35 H 0.10 1.29 4.75 -2.38 -0.01 1.28 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.24 6.23 -2.39 -0.01 1.23 16 38 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.05 1.49 7.49 -2.39 -0.02 1.47 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 2.59 6.00 -2.39 -0.01 2.58 16 42 H 0.04 1.67 7.91 -2.39 -0.02 1.65 16 43 H 0.06 3.63 5.88 -2.39 -0.01 3.62 16 44 H -0.01 -0.55 7.76 -2.39 -0.02 -0.56 16 45 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 46 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16 47 H 0.03 1.27 7.83 -2.38 -0.02 1.25 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.07 2.28 6.90 -2.39 -0.02 2.27 16 Total: -1.00 -77.29 377.89 -0.15 -77.44 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.32 Total: 12.05 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.41 Total: 10.92 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -7.66 Total: -121.12 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.25 Total: -27.58 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.29 -0.15 -77.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054196366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.287 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds