Wall clock time and date at job start Wed Apr 1 2020 04:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38398 * 120.85688 * 2 1 4 4 C 1.38307 * 119.30854 * 180.29409 * 3 2 1 5 5 N 1.31956 * 121.07821 * 359.72187 * 4 3 2 6 6 C 1.31665 * 121.88151 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56644 * 0.02562 * 6 5 4 8 8 C 1.47836 * 120.56025 * 179.97438 * 7 6 5 9 9 O 1.21555 * 119.99934 * 126.51877 * 8 7 6 10 10 N 1.34775 * 120.00302 * 306.51616 * 8 7 6 11 11 C 1.47162 * 121.07107 * 354.18319 * 10 8 7 12 12 C 1.53278 * 108.55821 * 231.20422 * 11 10 8 13 13 H 1.08998 * 109.51268 * 66.94162 * 12 11 10 14 14 C 1.53004 * 109.50975 * 187.04022 * 12 11 10 15 15 O 1.43136 * 109.22739 * 307.00911 * 12 11 10 16 16 C 1.41889 * 114.35875 * 60.90907 * 15 12 11 17 17 C 1.54374 * 110.72395 * 63.26342 * 16 15 12 18 18 C 1.54464 * 102.86427 * 83.69368 * 17 16 15 19 19 N 1.47089 * 107.29522 * 21.49992 * 18 17 16 20 20 C 1.36937 * 125.62316 * 180.97248 * 19 18 17 21 21 H 1.08004 * 119.99724 * 180.02562 * 20 19 18 22 22 C 1.38805 * 120.00514 * 0.03522 * 20 19 18 23 23 N 1.31622 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47084 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46637 * 299.99305 * 24 22 20 27 27 H 1.48495 * 109.47019 * 59.99360 * 24 22 20 28 28 C 1.47568 * 108.74603 * 1.24133 * 19 18 17 29 29 C 1.47334 * 121.07493 * 174.15999 * 10 8 7 30 30 H 1.08993 * 109.47346 * 275.09258 * 1 2 3 31 31 H 1.08998 * 109.47289 * 35.09737 * 1 2 3 32 32 H 1.09004 * 109.46976 * 155.09038 * 1 2 3 33 33 H 1.08004 * 120.34549 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.46339 * 179.69314 * 4 3 2 35 35 H 1.08000 * 119.71645 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.62601 * 350.92603 * 11 10 8 37 37 H 1.09000 * 109.62081 * 111.29765 * 11 10 8 38 38 H 1.09001 * 109.47674 * 59.99876 * 14 12 11 39 39 H 1.09006 * 109.46942 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.46781 * 299.99593 * 14 12 11 41 41 H 1.09001 * 110.73386 * 325.35254 * 17 16 15 42 42 H 1.08998 * 110.73441 * 202.03803 * 17 16 15 43 43 H 1.09000 * 109.87839 * 262.07868 * 18 17 16 44 44 H 1.08998 * 109.87792 * 140.92093 * 18 17 16 45 45 H 0.97003 * 119.99713 * 180.02562 * 23 22 20 46 46 H 1.09006 * 110.37434 * 95.25572 * 28 19 18 47 47 H 1.08991 * 110.38186 * 217.60686 * 28 19 18 48 48 H 1.09002 * 109.68248 * 11.10018 * 29 10 8 49 49 H 1.09001 * 109.67800 * 250.55522 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0062 5 7 4.2498 0.0026 -0.0066 6 6 3.6198 -1.1535 -0.0017 7 6 2.2250 -1.2017 0.0037 8 6 1.5177 -2.4999 0.0086 9 8 0.6800 -2.7324 0.8582 10 7 1.8016 -3.4256 -0.9288 11 6 2.7165 -3.1241 -2.0414 12 6 2.0276 -3.5055 -3.3565 13 1 1.1765 -2.8460 -3.5263 14 6 3.0203 -3.3665 -4.5124 15 8 1.5738 -4.8606 -3.2752 16 6 0.6293 -5.1006 -2.2438 17 6 -0.6644 -4.2950 -2.4896 18 6 -1.4513 -5.1973 -3.4655 19 7 -0.9260 -6.5633 -3.3182 20 6 -1.3459 -7.6597 -4.0231 21 1 -0.8953 -8.6241 -3.8405 22 6 -2.3506 -7.5316 -4.9723 23 7 -2.8999 -6.3564 -5.1946 24 14 -2.9229 -9.0272 -5.9343 25 1 -3.9974 -8.6272 -6.8780 26 1 -1.7802 -9.5930 -6.6955 27 1 -3.4463 -10.0501 -4.9937 28 6 0.1237 -6.5585 -2.2810 29 6 1.2065 -4.7723 -0.8726 30 1 -0.3633 0.0912 1.0235 31 1 -0.3634 0.8408 -0.5909 32 1 -0.3633 -0.9321 -0.4329 33 1 1.6966 2.1345 -0.0004 34 1 4.1558 2.0763 -0.0112 35 1 4.1872 -2.0725 -0.0018 36 1 2.9493 -2.0594 -2.0456 37 1 3.6351 -3.6993 -1.9260 38 1 3.8703 -4.0275 -4.3429 39 1 2.5296 -3.6375 -5.4473 40 1 3.3680 -2.3351 -4.5706 41 1 -0.4385 -3.3332 -2.9502 42 1 -1.2166 -4.1586 -1.5597 43 1 -1.3049 -4.8524 -4.4891 44 1 -2.5117 -5.1790 -3.2141 45 1 -3.6023 -6.2670 -5.8577 46 1 -0.2954 -6.8423 -1.3156 47 1 0.9335 -7.2335 -2.5573 48 1 0.4127 -4.7919 -0.1259 49 1 1.9735 -5.5019 -0.6129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071149726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:49 Heat of formation + Delta-G solvation = -1.431784 kcal Electronic energy + Delta-G solvation = -31912.903365 eV Core-core repulsion = 27841.305976 eV Total energy + Delta-G solvation = -4071.597388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.24298 -40.07257 -38.55811 -36.40681 -34.77490 -34.18367 -33.15123 -31.83711 -31.35016 -29.37811 -28.66901 -28.11348 -26.59157 -25.88557 -24.46938 -23.50299 -22.50114 -21.90362 -20.26739 -20.07321 -19.01576 -17.73158 -17.07559 -16.99815 -16.69212 -16.64832 -16.05014 -15.22070 -14.93322 -14.68226 -14.48349 -14.44156 -14.15063 -13.97733 -13.58363 -13.45026 -13.21132 -13.14610 -13.03376 -12.72682 -12.53823 -12.29414 -12.18871 -12.05627 -11.97489 -11.85139 -11.61252 -11.01489 -10.91774 -10.84431 -10.56103 -10.25510 -10.23169 -10.11295 -10.00857 -9.85363 -9.72157 -9.66762 -9.53404 -9.44319 -8.55958 -8.44559 -6.80536 -5.67442 -3.00669 0.46105 0.83009 2.43735 2.72279 3.39110 3.43495 3.47268 3.48592 3.82482 3.96916 4.20035 4.32733 4.36816 4.51052 4.62293 4.69900 4.83307 4.98919 4.99880 5.10891 5.15617 5.16130 5.25653 5.34214 5.35416 5.44518 5.49542 5.50595 5.57175 5.58463 5.75178 5.77676 5.78872 5.86862 5.93777 5.97549 6.11622 6.16845 6.22569 6.28932 6.46363 6.49059 6.53538 6.63548 7.17328 7.51501 7.56905 7.64007 7.66074 7.85307 7.92704 8.28037 9.24729 9.84767 10.50273 11.44393 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.002912 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.640482 B = 9612.535169 C = 9933.961850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.007 3.993 3 C -0.178 4.178 4 C 0.116 3.884 5 N -0.489 5.489 6 C 0.136 3.864 7 C -0.180 4.180 8 C 0.568 3.432 9 O -0.526 6.526 10 N -0.603 5.603 11 C 0.077 3.923 12 C 0.071 3.929 13 H 0.065 0.935 14 C -0.141 4.141 15 O -0.342 6.342 16 C 0.093 3.907 17 C -0.165 4.165 18 C 0.186 3.814 19 N -0.599 5.599 20 C -0.225 4.225 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.153 3.847 29 C 0.097 3.903 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.037 0.963 47 H 0.051 0.949 48 H 0.104 0.896 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.515 15.969 8.928 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.001 4.001 3 C -0.198 4.198 4 C -0.040 4.040 5 N -0.198 5.198 6 C -0.022 4.022 7 C -0.185 4.185 8 C 0.355 3.645 9 O -0.402 6.402 10 N -0.336 5.336 11 C -0.047 4.047 12 C 0.012 3.988 13 H 0.083 0.917 14 C -0.199 4.199 15 O -0.261 6.261 16 C 0.051 3.949 17 C -0.204 4.204 18 C 0.062 3.938 19 N -0.325 5.325 20 C -0.353 4.353 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.212 1.212 28 C 0.026 3.974 29 C -0.026 4.026 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.122 0.878 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.858 15.652 9.078 22.791 hybrid contribution -1.250 -0.428 -0.405 1.382 sum 12.607 15.224 8.673 21.586 Atomic orbital electron populations 1.20925 0.89317 1.03894 1.03716 1.20410 0.97261 0.91401 0.91049 1.22031 0.95584 0.98607 1.03576 1.22942 0.91729 0.96433 0.92899 1.67722 1.40665 0.98222 1.13166 1.22957 0.90020 0.96698 0.92575 1.20881 0.95632 0.94215 1.07780 1.18052 0.82018 0.83065 0.81396 1.90808 1.32556 1.79099 1.37761 1.48125 1.46558 1.13382 1.25518 1.22632 0.93212 1.01985 0.86829 1.22423 0.96711 0.86168 0.93520 0.91737 1.21690 0.98663 1.01665 0.97852 1.87928 1.59653 1.25341 1.53138 1.22437 0.88218 0.98964 0.85246 1.23366 0.96640 0.99083 1.01291 1.21095 0.94929 0.82296 0.95510 1.44408 1.40418 1.05539 1.42165 1.18998 1.15095 0.87077 1.14151 0.90427 1.24786 0.99054 0.97005 0.99590 1.69959 1.28960 1.21452 1.36676 0.86188 0.78054 0.81808 0.79639 1.21672 1.21180 1.21197 1.21379 0.91957 0.90616 0.93422 1.22237 0.99399 0.81706 0.99212 0.89508 0.90589 0.90519 0.84033 0.82233 0.82288 0.89445 0.90162 0.91626 0.90936 0.91368 0.92161 0.91628 0.93522 0.93986 0.93794 0.94508 0.93053 0.87785 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.36 36.01 0.34 -0.86 16 2 C 0.01 0.07 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.39 9.82 -39.50 -0.39 -1.78 16 4 C 0.12 0.92 11.17 -17.47 -0.20 0.73 16 5 N -0.49 -4.93 10.35 -12.91 -0.13 -5.06 16 6 C 0.14 1.39 9.03 -17.13 -0.15 1.23 16 7 C -0.18 -2.06 4.63 -104.82 -0.48 -2.55 16 8 C 0.57 7.84 6.20 -12.33 -0.08 7.76 16 9 O -0.53 -8.85 15.53 5.32 0.08 -8.77 16 10 N -0.60 -7.98 2.95 -173.82 -0.51 -8.50 16 11 C 0.08 0.86 5.00 -3.54 -0.02 0.84 16 12 C 0.07 0.96 3.19 -26.59 -0.08 0.88 16 13 H 0.06 0.95 6.22 -51.93 -0.32 0.62 16 14 C -0.14 -1.58 9.57 37.16 0.36 -1.23 16 15 O -0.34 -6.10 9.94 -35.22 -0.35 -6.45 16 16 C 0.09 1.65 0.84 -89.52 -0.08 1.58 16 17 C -0.17 -3.21 5.86 -25.24 -0.15 -3.36 16 18 C 0.19 4.63 5.38 -2.95 -0.02 4.61 16 19 N -0.60 -15.49 3.40 -170.17 -0.58 -16.07 16 20 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 21 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 C 0.15 3.18 6.43 -2.75 -0.02 3.16 16 29 C 0.10 1.44 5.31 -3.91 -0.02 1.42 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.08 0.93 6.70 -51.93 -0.35 0.58 16 33 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.16 1.39 7.75 -52.49 -0.41 0.98 16 36 H 0.09 0.86 5.57 -51.93 -0.29 0.57 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.10 6.07 -51.93 -0.32 0.79 16 42 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 43 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 44 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.10 1.65 6.84 -51.93 -0.36 1.29 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -33.80 384.12 -9.42 -43.21 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.41 Total: 0.30 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.86 Total: 5.07 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.65 Total: -56.46 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.27 Total: -15.22 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.80 -9.42 -43.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071149726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.780 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds