Wall clock time and date at job start Wed Apr 1 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38398 * 120.85688 * 2 1 4 4 C 1.38307 * 119.30854 * 180.29409 * 3 2 1 5 5 N 1.31956 * 121.07821 * 359.72187 * 4 3 2 6 6 C 1.31665 * 121.88151 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56644 * 0.02562 * 6 5 4 8 8 C 1.47836 * 120.56025 * 179.97438 * 7 6 5 9 9 O 1.21555 * 119.99934 * 126.51877 * 8 7 6 10 10 N 1.34775 * 120.00302 * 306.51616 * 8 7 6 11 11 C 1.47162 * 121.07107 * 354.18319 * 10 8 7 12 12 C 1.53278 * 108.55821 * 231.20422 * 11 10 8 13 13 H 1.08998 * 109.51268 * 66.94162 * 12 11 10 14 14 C 1.53004 * 109.50975 * 187.04022 * 12 11 10 15 15 O 1.43136 * 109.22739 * 307.00911 * 12 11 10 16 16 C 1.41889 * 114.35875 * 60.90907 * 15 12 11 17 17 C 1.54374 * 110.72395 * 63.26342 * 16 15 12 18 18 C 1.54464 * 102.86427 * 83.69368 * 17 16 15 19 19 N 1.47089 * 107.29522 * 21.49992 * 18 17 16 20 20 C 1.36937 * 125.62316 * 180.97248 * 19 18 17 21 21 H 1.08004 * 119.99724 * 180.02562 * 20 19 18 22 22 C 1.38805 * 120.00514 * 0.03522 * 20 19 18 23 23 N 1.31622 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47084 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46637 * 299.99305 * 24 22 20 27 27 H 1.48495 * 109.47019 * 59.99360 * 24 22 20 28 28 C 1.47568 * 108.74603 * 1.24133 * 19 18 17 29 29 C 1.47334 * 121.07493 * 174.15999 * 10 8 7 30 30 H 1.08993 * 109.47346 * 275.09258 * 1 2 3 31 31 H 1.08998 * 109.47289 * 35.09737 * 1 2 3 32 32 H 1.09004 * 109.46976 * 155.09038 * 1 2 3 33 33 H 1.08004 * 120.34549 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.46339 * 179.69314 * 4 3 2 35 35 H 1.08000 * 119.71645 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.62601 * 350.92603 * 11 10 8 37 37 H 1.09000 * 109.62081 * 111.29765 * 11 10 8 38 38 H 1.09001 * 109.47674 * 59.99876 * 14 12 11 39 39 H 1.09006 * 109.46942 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.46781 * 299.99593 * 14 12 11 41 41 H 1.09001 * 110.73386 * 325.35254 * 17 16 15 42 42 H 1.08998 * 110.73441 * 202.03803 * 17 16 15 43 43 H 1.09000 * 109.87839 * 262.07868 * 18 17 16 44 44 H 1.08998 * 109.87792 * 140.92093 * 18 17 16 45 45 H 0.97003 * 119.99713 * 180.02562 * 23 22 20 46 46 H 1.09006 * 110.37434 * 95.25572 * 28 19 18 47 47 H 1.08991 * 110.38186 * 217.60686 * 28 19 18 48 48 H 1.09002 * 109.68248 * 11.10018 * 29 10 8 49 49 H 1.09001 * 109.67800 * 250.55522 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0062 5 7 4.2498 0.0026 -0.0066 6 6 3.6198 -1.1535 -0.0017 7 6 2.2250 -1.2017 0.0037 8 6 1.5177 -2.4999 0.0086 9 8 0.6800 -2.7324 0.8582 10 7 1.8016 -3.4256 -0.9288 11 6 2.7165 -3.1241 -2.0414 12 6 2.0276 -3.5055 -3.3565 13 1 1.1765 -2.8460 -3.5263 14 6 3.0203 -3.3665 -4.5124 15 8 1.5738 -4.8606 -3.2752 16 6 0.6293 -5.1006 -2.2438 17 6 -0.6644 -4.2950 -2.4896 18 6 -1.4513 -5.1973 -3.4655 19 7 -0.9260 -6.5633 -3.3182 20 6 -1.3459 -7.6597 -4.0231 21 1 -0.8953 -8.6241 -3.8405 22 6 -2.3506 -7.5316 -4.9723 23 7 -2.8999 -6.3564 -5.1946 24 14 -2.9229 -9.0272 -5.9343 25 1 -3.9974 -8.6272 -6.8780 26 1 -1.7802 -9.5930 -6.6955 27 1 -3.4463 -10.0501 -4.9937 28 6 0.1237 -6.5585 -2.2810 29 6 1.2065 -4.7723 -0.8726 30 1 -0.3633 0.0912 1.0235 31 1 -0.3634 0.8408 -0.5909 32 1 -0.3633 -0.9321 -0.4329 33 1 1.6966 2.1345 -0.0004 34 1 4.1558 2.0763 -0.0112 35 1 4.1872 -2.0725 -0.0018 36 1 2.9493 -2.0594 -2.0456 37 1 3.6351 -3.6993 -1.9260 38 1 3.8703 -4.0275 -4.3429 39 1 2.5296 -3.6375 -5.4473 40 1 3.3680 -2.3351 -4.5706 41 1 -0.4385 -3.3332 -2.9502 42 1 -1.2166 -4.1586 -1.5597 43 1 -1.3049 -4.8524 -4.4891 44 1 -2.5117 -5.1790 -3.2141 45 1 -3.6023 -6.2670 -5.8577 46 1 -0.2954 -6.8423 -1.3156 47 1 0.9335 -7.2335 -2.5573 48 1 0.4127 -4.7919 -0.1259 49 1 1.9735 -5.5019 -0.6129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071149726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:47 Heat of formation + Delta-G solvation = -23.739081 kcal Electronic energy + Delta-G solvation = -31913.870682 eV Core-core repulsion = 27841.305976 eV Total energy + Delta-G solvation = -4072.564705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.22249 -41.12953 -39.69780 -37.99704 -35.94674 -34.97062 -34.77489 -33.03115 -32.56107 -31.09824 -30.08887 -28.99148 -27.71895 -27.29169 -25.91429 -24.68962 -23.34594 -23.08461 -22.06419 -21.25507 -20.28918 -18.97173 -18.68656 -18.05319 -17.75979 -17.38238 -17.16336 -16.76884 -16.37986 -15.88168 -15.79254 -15.64253 -15.17562 -15.12743 -15.07601 -14.75464 -14.29722 -14.06584 -13.91789 -13.80406 -13.72580 -13.63011 -13.56306 -13.18251 -13.07934 -13.02858 -12.85155 -12.77195 -12.73518 -12.29356 -12.09508 -12.05125 -11.87073 -11.77750 -11.61068 -11.21772 -10.95043 -10.70440 -10.58244 -10.47088 -10.16834 -9.61975 -8.92123 -7.84859 -5.20731 -0.25769 0.14651 1.42163 1.45319 1.49420 1.55283 1.71346 2.48767 2.56807 2.70114 3.17182 3.33514 3.42753 3.49712 3.55185 3.61268 3.74013 3.78706 3.85403 3.89155 3.97421 4.04149 4.14500 4.32527 4.34432 4.41119 4.44479 4.48514 4.57145 4.61524 4.66295 4.70227 4.71259 4.75939 4.81784 4.82595 4.92304 5.00358 5.05724 5.06912 5.16530 5.24521 5.28563 5.42229 5.56439 5.59590 5.68974 6.14157 6.16553 6.34969 6.82943 6.90613 7.08057 7.74759 8.39657 9.25895 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.002912 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.640482 B = 9612.535169 C = 9933.961850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.007 4.007 3 C -0.168 4.168 4 C 0.120 3.880 5 N -0.504 5.504 6 C 0.137 3.863 7 C -0.199 4.199 8 C 0.570 3.430 9 O -0.564 6.564 10 N -0.603 5.603 11 C 0.085 3.915 12 C 0.063 3.937 13 H 0.048 0.952 14 C -0.135 4.135 15 O -0.367 6.367 16 C 0.109 3.891 17 C -0.149 4.149 18 C 0.200 3.800 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.982 3.018 25 H -0.295 1.295 26 H -0.276 1.276 27 H -0.275 1.275 28 C 0.146 3.854 29 C 0.106 3.894 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.174 0.826 34 H 0.195 0.805 35 H 0.171 0.829 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.004 0.996 45 H 0.246 0.754 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.176 17.541 9.606 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.015 4.015 3 C -0.188 4.188 4 C -0.036 4.036 5 N -0.213 5.213 6 C -0.021 4.021 7 C -0.205 4.205 8 C 0.359 3.641 9 O -0.443 6.443 10 N -0.335 5.335 11 C -0.037 4.037 12 C 0.005 3.995 13 H 0.066 0.934 14 C -0.193 4.193 15 O -0.286 6.286 16 C 0.067 3.933 17 C -0.187 4.187 18 C 0.074 3.926 19 N -0.347 5.347 20 C -0.369 4.369 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.809 3.191 25 H -0.221 1.221 26 H -0.202 1.202 27 H -0.201 1.201 28 C 0.021 3.979 29 C -0.017 4.017 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.191 0.809 34 H 0.211 0.789 35 H 0.188 0.812 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.022 0.978 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.569 17.226 9.770 25.821 hybrid contribution -2.045 -0.824 -0.612 2.288 sum 14.525 16.401 9.158 23.745 Atomic orbital electron populations 1.20891 0.89616 1.03267 1.03804 1.20605 0.97342 0.92041 0.91539 1.22346 0.95649 0.98864 1.01922 1.23562 0.92108 0.96996 0.90906 1.67803 1.41028 0.98718 1.13780 1.23081 0.89357 0.97458 0.92233 1.20758 0.96232 0.93195 1.10284 1.18436 0.81368 0.83672 0.80640 1.90782 1.34369 1.79872 1.39298 1.48157 1.46598 1.12651 1.26068 1.22699 0.92984 1.03583 0.84448 1.22699 0.96985 0.83775 0.96041 0.93360 1.21702 0.97997 1.03923 0.95642 1.87888 1.59358 1.28028 1.53363 1.22131 0.87666 0.96293 0.87182 1.23156 0.97131 0.98583 0.99839 1.20738 0.93758 0.83368 0.94693 1.44696 1.41712 1.05240 1.43058 1.19444 1.15039 0.88179 1.14235 0.89662 1.25685 0.99532 0.99910 1.00960 1.70200 1.29374 1.23525 1.37194 0.85108 0.77421 0.78451 0.78085 1.22140 1.20218 1.20129 1.21588 0.90894 0.92991 0.92459 1.21994 0.99818 0.83402 0.96498 0.89667 0.88229 0.93508 0.80906 0.78867 0.81225 0.87459 0.87907 0.90538 0.93009 0.88191 0.91214 0.91305 0.97436 0.97774 0.94514 0.93171 0.92684 0.88845 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.36 71.24 0.67 -1.56 16 2 C -0.01 -0.13 5.95 -19.40 -0.12 -0.24 16 3 C -0.17 -2.02 9.82 22.32 0.22 -1.80 16 4 C 0.12 1.43 11.17 84.69 0.95 2.37 16 5 N -0.50 -8.50 10.35 -194.76 -2.01 -10.52 16 6 C 0.14 2.44 9.03 85.04 0.77 3.20 16 7 C -0.20 -4.24 4.63 -19.99 -0.09 -4.33 16 8 C 0.57 15.32 6.20 86.78 0.54 15.86 16 9 O -0.56 -19.17 15.53 -3.89 -0.06 -19.23 16 10 N -0.60 -15.19 2.95 -822.11 -2.42 -17.61 16 11 C 0.09 1.71 5.00 86.35 0.43 2.14 16 12 C 0.06 1.65 3.19 30.69 0.10 1.74 16 13 H 0.05 1.41 6.22 -2.39 -0.01 1.40 16 14 C -0.14 -2.78 9.57 71.98 0.69 -2.09 16 15 O -0.37 -12.98 9.94 -148.95 -1.48 -14.47 16 16 C 0.11 3.88 0.84 -10.08 -0.01 3.87 16 17 C -0.15 -5.98 5.86 31.56 0.19 -5.80 16 18 C 0.20 10.50 5.38 86.76 0.47 10.97 16 19 N -0.62 -33.23 3.40 -692.29 -2.35 -35.59 16 20 C -0.24 -13.87 10.28 84.03 0.86 -13.00 16 21 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 22 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 23 N -0.95 -59.30 10.31 21.65 0.22 -59.08 16 24 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 C 0.15 6.13 6.43 86.63 0.56 6.69 16 29 C 0.11 3.06 5.31 86.01 0.46 3.51 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.30 8.13 -2.39 -0.02 1.28 16 32 H 0.05 1.15 6.70 -2.39 -0.02 1.14 16 33 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.17 2.50 7.75 -2.91 -0.02 2.47 16 36 H 0.11 1.78 5.57 -2.39 -0.01 1.77 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 2.65 6.07 -2.39 -0.01 2.64 16 42 H 0.07 2.71 7.83 -2.39 -0.02 2.69 16 43 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 44 H 0.00 0.24 7.50 -2.39 -0.02 0.22 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.05 1.99 8.00 -2.38 -0.02 1.97 16 47 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.09 2.94 6.84 -2.39 -0.02 2.92 16 49 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -77.60 384.12 2.01 -75.59 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.95 Total: 13.99 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 7.14 Total: 18.00 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -6.57 Total: -122.80 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.54 Total: -33.69 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.60 2.01 -75.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071149726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.848 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds