Wall clock time and date at job start Wed Apr 1 2020 04:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 120.85570 * 2 1 4 4 C 1.38301 * 119.30328 * 179.97438 * 3 2 1 5 5 N 1.31958 * 121.08333 * 0.02562 * 4 3 2 6 6 C 1.31659 * 121.87825 * 359.97438 * 5 4 3 7 7 C 1.39558 * 120.56587 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.55687 * 180.27235 * 7 6 5 9 9 O 1.21549 * 119.99833 * 127.27953 * 8 7 6 10 10 N 1.34777 * 119.99991 * 307.26958 * 8 7 6 11 11 C 1.47163 * 121.07991 * 4.08040 * 10 8 7 12 12 C 1.53287 * 108.55437 * 231.23180 * 11 10 8 13 13 H 1.08998 * 109.50928 * 66.88592 * 12 11 10 14 14 C 1.52994 * 109.51497 * 186.98982 * 12 11 10 15 15 O 1.43118 * 109.21601 * 306.96707 * 12 11 10 16 16 C 1.41878 * 114.40098 * 60.88486 * 15 12 11 17 17 C 1.54366 * 110.74092 * 176.75984 * 16 15 12 18 18 C 1.54470 * 102.87153 * 276.33282 * 17 16 15 19 19 N 1.47079 * 107.29724 * 338.49994 * 18 17 16 20 20 C 1.36934 * 125.63151 * 178.98886 * 19 18 17 21 21 H 1.08000 * 119.99917 * 180.02562 * 20 19 18 22 22 C 1.38808 * 119.99880 * 0.02562 * 20 19 18 23 23 N 1.31626 * 120.00431 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99997 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47163 * 90.00340 * 24 22 20 26 26 H 1.48506 * 109.47091 * 210.00130 * 24 22 20 27 27 H 1.48498 * 109.47318 * 330.00286 * 24 22 20 28 28 C 1.47574 * 108.73723 * 359.01148 * 19 18 17 29 29 C 1.47330 * 121.07664 * 183.79082 * 10 8 7 30 30 H 1.09000 * 109.46904 * 274.46057 * 1 2 3 31 31 H 1.09005 * 109.47304 * 34.46182 * 1 2 3 32 32 H 1.08997 * 109.47213 * 154.46333 * 1 2 3 33 33 H 1.08001 * 120.34734 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.45671 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.71462 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.62491 * 350.94426 * 11 10 8 37 37 H 1.08994 * 109.62684 * 111.32255 * 11 10 8 38 38 H 1.09002 * 109.46871 * 60.00064 * 14 12 11 39 39 H 1.08998 * 109.47361 * 179.97438 * 14 12 11 40 40 H 1.08994 * 109.47549 * 300.00286 * 14 12 11 41 41 H 1.08999 * 110.72982 * 34.67293 * 17 16 15 42 42 H 1.08995 * 110.73475 * 157.98694 * 17 16 15 43 43 H 1.08999 * 109.87553 * 97.92699 * 18 17 16 44 44 H 1.08996 * 109.87451 * 218.92089 * 18 17 16 45 45 H 0.96998 * 120.00454 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.37255 * 264.48868 * 28 19 18 47 47 H 1.08994 * 110.37692 * 142.14835 * 28 19 18 48 48 H 1.09008 * 109.64112 * 250.55550 * 29 10 8 49 49 H 1.08994 * 109.64333 * 11.18711 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1506 0.0005 5 7 4.2497 0.0025 0.0005 6 6 3.6197 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0000 8 6 1.5176 -2.4999 0.0060 9 8 0.6665 -2.7244 0.8443 10 7 1.8164 -3.4344 -0.9180 11 6 2.9029 -3.2236 -1.8879 12 6 2.3591 -3.4927 -3.2956 13 1 1.6214 -2.7324 -3.5523 14 6 3.5087 -3.4505 -4.3043 15 8 1.7439 -4.7846 -3.3240 16 6 0.6472 -4.9311 -2.4359 17 6 -0.0011 -6.3233 -2.5929 18 6 -0.9549 -6.1255 -3.7917 19 7 -1.2229 -4.6837 -3.9042 20 6 -2.0093 -4.0902 -4.8551 21 1 -2.1437 -3.0186 -4.8528 22 6 -2.6337 -4.8659 -5.8222 23 7 -2.4704 -6.1719 -5.8248 24 14 -3.7060 -4.0562 -7.1199 25 1 -2.8744 -3.7005 -8.2977 26 1 -4.7761 -4.9981 -7.5359 27 1 -4.3200 -2.8264 -6.5579 28 6 -0.5037 -3.9822 -2.8231 29 6 1.0700 -4.7029 -0.9858 30 1 -0.3633 0.0799 1.0246 31 1 -0.3634 0.8473 -0.5815 32 1 -0.3633 -0.9272 -0.4430 33 1 1.6966 2.1346 0.0004 34 1 4.1557 2.0763 0.0001 35 1 4.1871 -2.0726 0.0001 36 1 3.2572 -2.1948 -1.8229 37 1 3.7237 -3.9077 -1.6727 38 1 4.2450 -4.2122 -4.0479 39 1 3.1213 -3.6424 -5.3049 40 1 3.9788 -2.4675 -4.2786 41 1 0.7531 -7.0767 -2.8202 42 1 -0.5591 -6.5924 -1.6962 43 1 -0.4822 -6.4869 -4.7050 44 1 -1.8857 -6.6653 -3.6177 45 1 -2.9070 -6.7140 -6.5003 46 1 -1.1642 -3.8193 -1.9714 47 1 -0.1079 -3.0330 -3.1843 48 1 1.7084 -5.5218 -0.6539 49 1 0.1864 -4.6425 -0.3505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071149727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:51 Heat of formation + Delta-G solvation = -22.903372 kcal Electronic energy + Delta-G solvation = -32161.378687 eV Core-core repulsion = 28088.850220 eV Total energy + Delta-G solvation = -4072.528466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.24598 -41.12307 -39.70779 -37.98256 -35.96939 -34.98530 -34.84870 -33.07636 -32.56746 -31.12052 -29.95628 -28.94713 -27.80528 -27.36744 -25.95095 -24.71219 -23.43590 -23.06600 -22.01616 -21.25551 -20.25813 -19.04491 -18.66967 -18.07883 -17.73607 -17.43732 -17.15977 -16.79732 -16.41377 -15.88944 -15.85686 -15.61593 -15.25538 -15.16907 -15.04061 -14.78786 -14.28007 -14.02308 -13.94921 -13.76657 -13.74309 -13.63245 -13.58536 -13.18599 -13.09980 -12.99602 -12.81160 -12.79984 -12.71756 -12.27801 -12.09477 -12.03483 -12.00094 -11.74497 -11.68813 -11.20551 -10.96978 -10.72504 -10.59462 -10.48759 -10.16494 -9.61995 -8.93388 -7.87908 -5.23902 -0.27222 0.12546 1.40692 1.42090 1.44566 1.53148 1.73167 2.45522 2.57430 2.69059 3.15881 3.29766 3.40484 3.48750 3.57148 3.60280 3.68391 3.72799 3.85930 3.93992 3.99085 4.04408 4.11599 4.31643 4.34514 4.40698 4.46239 4.52996 4.56919 4.58813 4.60990 4.64963 4.68357 4.74333 4.80563 4.88615 4.92582 4.98113 5.04708 5.05609 5.17136 5.23570 5.27958 5.37525 5.57795 5.61735 5.73366 6.12855 6.15169 6.32946 6.81099 6.89195 7.06385 7.71884 8.36905 9.22367 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003486 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.703103 B = 8030.610739 C = 8557.560637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.007 4.007 3 C -0.170 4.170 4 C 0.120 3.880 5 N -0.502 5.502 6 C 0.134 3.866 7 C -0.201 4.201 8 C 0.568 3.432 9 O -0.564 6.564 10 N -0.605 5.605 11 C 0.080 3.920 12 C 0.065 3.935 13 H 0.039 0.961 14 C -0.134 4.134 15 O -0.365 6.365 16 C 0.106 3.894 17 C -0.118 4.118 18 C 0.191 3.809 19 N -0.619 5.619 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.061 4.061 23 N -0.947 5.947 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.123 3.877 29 C 0.107 3.893 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.173 0.827 34 H 0.196 0.804 35 H 0.176 0.824 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.248 0.752 46 H 0.017 0.983 47 H 0.032 0.968 48 H 0.104 0.896 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.354 12.696 12.043 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.016 4.016 3 C -0.189 4.189 4 C -0.035 4.035 5 N -0.211 5.211 6 C -0.024 4.024 7 C -0.206 4.206 8 C 0.357 3.643 9 O -0.443 6.443 10 N -0.337 5.337 11 C -0.042 4.042 12 C 0.007 3.993 13 H 0.057 0.943 14 C -0.191 4.191 15 O -0.284 6.284 16 C 0.065 3.935 17 C -0.156 4.156 18 C 0.066 3.934 19 N -0.345 5.345 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.254 4.254 23 N -0.596 5.596 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.195 1.195 28 C -0.003 4.003 29 C -0.016 4.016 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.190 0.810 34 H 0.213 0.787 35 H 0.192 0.808 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.050 0.950 48 H 0.122 0.878 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.747 12.385 12.196 24.136 hybrid contribution -2.227 0.087 -0.864 2.390 sum 14.520 12.472 11.331 22.243 Atomic orbital electron populations 1.20879 0.89821 1.03067 1.03770 1.20587 0.97252 0.92174 0.91557 1.22346 0.95760 0.98792 1.01990 1.23565 0.92002 0.97084 0.90857 1.67806 1.40925 0.98667 1.13746 1.23152 0.89293 0.97625 0.92292 1.20787 0.96388 0.93249 1.10221 1.18428 0.81768 0.83611 0.80467 1.90770 1.34634 1.80207 1.38717 1.48200 1.35380 1.17544 1.32532 1.22849 0.89473 1.04779 0.87100 1.22645 0.95478 0.85449 0.95742 0.94293 1.21689 0.95931 1.04229 0.97296 1.87826 1.45482 1.32678 1.62455 1.22187 0.85975 0.96733 0.88652 1.22741 0.98475 0.94786 0.99615 1.20881 0.94502 0.84055 0.93940 1.44695 1.55498 1.03228 1.31108 1.19358 1.21183 0.91854 1.05180 0.90741 1.25632 1.02185 0.96263 1.01336 1.70183 1.48114 1.04478 1.36793 0.85089 0.77978 0.77387 0.78923 1.21099 1.21694 1.19537 1.21998 0.92539 0.95114 0.90669 1.22147 0.98139 0.85904 0.95386 0.89446 0.88503 0.93820 0.80982 0.78742 0.80753 0.87287 0.87295 0.90053 0.93176 0.88398 0.88785 0.88642 0.97005 0.97109 0.94264 0.96552 0.95016 0.87814 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.32 71.24 0.66 -1.90 16 2 C -0.01 -0.15 5.95 -19.40 -0.12 -0.27 16 3 C -0.17 -2.36 9.82 22.32 0.22 -2.14 16 4 C 0.12 1.60 11.17 84.69 0.95 2.54 16 5 N -0.50 -8.93 10.35 -194.76 -2.01 -10.94 16 6 C 0.13 2.51 8.64 85.04 0.73 3.25 16 7 C -0.20 -4.62 4.94 -19.99 -0.10 -4.72 16 8 C 0.57 16.14 6.28 86.79 0.54 16.68 16 9 O -0.56 -19.82 15.48 -3.87 -0.06 -19.87 16 10 N -0.60 -15.94 2.95 -821.30 -2.42 -18.36 16 11 C 0.08 1.68 4.90 86.35 0.42 2.10 16 12 C 0.06 1.80 3.20 30.69 0.10 1.90 16 13 H 0.04 1.29 6.26 -2.39 -0.01 1.28 16 14 C -0.13 -2.88 9.57 71.98 0.69 -2.19 16 15 O -0.37 -12.91 9.92 -148.95 -1.48 -14.38 16 16 C 0.11 3.79 0.83 -10.03 -0.01 3.78 16 17 C -0.12 -4.42 6.12 31.56 0.19 -4.22 16 18 C 0.19 9.83 5.38 86.77 0.47 10.30 16 19 N -0.62 -33.53 3.40 -692.77 -2.36 -35.88 16 20 C -0.25 -14.47 10.28 84.03 0.86 -13.61 16 21 H 0.07 4.23 7.83 -2.91 -0.02 4.20 16 22 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 23 N -0.95 -58.25 10.31 21.65 0.22 -58.03 16 24 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 28 C 0.12 5.42 6.19 86.55 0.54 5.96 16 29 C 0.11 3.11 5.32 86.14 0.46 3.56 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 1.59 8.13 -2.38 -0.02 1.57 16 32 H 0.04 1.23 6.70 -2.39 -0.02 1.21 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.18 2.57 7.26 -2.91 -0.02 2.55 16 36 H 0.11 1.94 4.86 -2.38 -0.01 1.93 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.10 3.15 8.00 -2.39 -0.02 3.13 16 43 H 0.01 0.68 7.39 -2.39 -0.02 0.66 16 44 H 0.01 0.61 7.50 -2.39 -0.02 0.59 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.02 0.76 7.83 -2.39 -0.02 0.74 16 47 H 0.03 1.43 6.10 -2.39 -0.01 1.41 16 48 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 49 H 0.09 2.91 6.90 -2.39 -0.02 2.89 16 Total: -1.00 -78.10 382.84 1.96 -76.14 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.96 Total: 14.57 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 7.08 Total: 17.91 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -6.57 Total: -123.21 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.54 Total: -34.26 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.10 1.96 -76.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071149727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.241 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds