Wall clock time and date at job start Wed Apr 1 2020 03:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38628 * 120.75967 * 2 1 4 4 C 1.38562 * 119.35149 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.54626 * 180.02562 * 4 3 2 6 6 N 1.31517 * 120.90378 * 359.97438 * 4 3 2 7 7 C 1.32715 * 121.64446 * 0.02562 * 6 4 3 8 8 C 1.48170 * 119.72418 * 180.02562 * 7 6 4 9 9 O 1.21521 * 120.00491 * 172.82577 * 8 7 6 10 10 N 1.34783 * 120.00030 * 352.82305 * 8 7 6 11 11 C 1.46838 * 120.40582 * 351.03523 * 10 8 7 12 12 C 1.53371 * 109.24144 * 232.23495 * 11 10 8 13 13 C 1.52790 * 108.81442 * 306.16006 * 12 11 10 14 14 H 1.08996 * 109.33953 * 302.84771 * 13 12 11 15 15 O 1.42596 * 111.11771 * 182.54765 * 13 12 11 16 16 C 1.43150 * 113.62534 * 176.35078 * 15 13 12 17 17 C 1.52746 * 109.81474 * 61.54190 * 16 15 13 18 18 N 1.47350 * 109.04875 * 309.06061 * 17 16 15 19 19 C 1.36940 * 121.30261 * 230.16676 * 18 17 16 20 20 H 1.07998 * 120.00212 * 164.25598 * 19 18 17 21 21 C 1.38811 * 119.99872 * 344.25341 * 19 18 17 22 22 N 1.31618 * 120.00163 * 322.09396 * 21 19 18 23 23 Si 1.86802 * 120.00225 * 142.09548 * 21 19 18 24 24 H 1.48496 * 109.47166 * 265.00403 * 23 21 19 25 25 H 1.48503 * 109.46601 * 25.00038 * 23 21 19 26 26 H 1.48495 * 109.47468 * 144.99930 * 23 21 19 27 27 C 1.46874 * 117.39499 * 49.90153 * 18 17 16 28 28 H 1.09002 * 109.65840 * 68.61506 * 27 18 17 29 29 C 1.47125 * 120.40930 * 171.01415 * 10 8 7 30 30 C 1.38596 * 120.75367 * 180.28215 * 2 1 3 31 31 H 1.09001 * 109.47109 * 89.99406 * 1 2 3 32 32 H 1.08990 * 109.47310 * 209.99603 * 1 2 3 33 33 H 1.09005 * 109.46662 * 329.99481 * 1 2 3 34 34 H 1.07992 * 120.32241 * 0.02988 * 3 2 1 35 35 H 1.09000 * 109.47164 * 269.98058 * 5 4 3 36 36 H 1.09002 * 109.47314 * 29.98058 * 5 4 3 37 37 H 1.08995 * 109.47069 * 149.98384 * 5 4 3 38 38 H 1.08996 * 109.51195 * 352.16717 * 11 10 8 39 39 H 1.09004 * 109.51009 * 112.30466 * 11 10 8 40 40 H 1.09004 * 109.58029 * 65.95973 * 12 11 10 41 41 H 1.08992 * 109.58013 * 186.36093 * 12 11 10 42 42 H 1.08998 * 109.42767 * 181.76726 * 16 15 13 43 43 H 1.09001 * 109.42703 * 301.60951 * 16 15 13 44 44 H 1.09004 * 109.51214 * 189.15740 * 17 16 15 45 45 H 1.09004 * 109.40922 * 68.90278 * 17 16 15 46 46 H 0.97009 * 120.00219 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.73017 * 7.12509 * 29 10 8 48 48 H 1.09007 * 109.75772 * 246.47953 * 29 10 8 49 49 H 1.08001 * 120.47244 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1913 0.0000 4 6 3.6012 1.1572 0.0005 5 6 4.3763 2.4496 0.0011 6 7 4.2487 0.0125 0.0016 7 6 3.6081 -1.1498 0.0016 8 6 4.3805 -2.4143 0.0033 9 8 3.8060 -3.4771 0.1348 10 7 5.7203 -2.3859 -0.1410 11 6 6.4032 -1.1352 -0.4954 12 6 7.3040 -1.3786 -1.7125 13 6 8.2314 -2.5551 -1.4118 14 1 8.8060 -2.3406 -0.5108 15 8 9.1331 -2.7875 -2.4917 16 6 10.0829 -3.8267 -2.2325 17 6 9.3537 -5.1490 -2.0023 18 7 8.2997 -4.9475 -0.9925 19 6 8.1808 -5.7806 0.0878 20 1 7.5837 -5.4821 0.9368 21 6 8.8278 -7.0087 0.0917 22 7 8.9036 -7.7161 -1.0156 23 14 9.5908 -7.6575 1.6686 24 1 11.0310 -7.2978 1.7061 25 1 8.8996 -7.0555 2.8370 26 1 9.4481 -9.1348 1.7162 27 6 7.3853 -3.8147 -1.1869 28 1 6.7492 -4.0012 -2.0522 29 6 6.5165 -3.6074 0.0551 30 6 2.2157 -1.1910 -0.0059 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5137 33 1 -0.3633 0.8900 0.5139 34 1 1.6938 2.1365 0.0005 35 1 4.5639 2.7612 -1.0264 36 1 3.7996 3.2189 0.5146 37 1 5.3261 2.3034 0.5155 38 1 5.6633 -0.3722 -0.7369 39 1 7.0104 -0.8010 0.3459 40 1 6.6888 -1.6114 -2.5817 41 1 7.8982 -0.4868 -1.9114 42 1 10.7545 -3.9251 -3.0853 43 1 10.6615 -3.5756 -1.3434 44 1 10.0615 -5.8981 -1.6472 45 1 8.9044 -5.4825 -2.9378 46 1 9.3555 -8.5746 -1.0128 47 1 5.8529 -4.4620 0.1867 48 1 7.1516 -3.4961 0.9340 49 1 1.6958 -2.1377 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074282537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:02 Heat of formation + Delta-G solvation = 6.009315 kcal Electronic energy + Delta-G solvation = -31466.683227 eV Core-core repulsion = 27395.408509 eV Total energy + Delta-G solvation = -4071.274718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.08462 -39.61281 -38.38783 -36.10239 -34.75728 -34.48258 -33.10546 -31.59092 -31.37231 -29.84390 -28.37242 -27.86099 -27.16625 -25.67645 -23.90495 -23.81919 -21.92301 -21.56409 -21.22837 -19.74412 -19.23635 -17.47722 -16.89458 -16.45214 -16.25554 -15.82220 -15.55235 -15.28083 -14.98847 -14.65051 -14.49286 -14.25298 -13.91680 -13.77252 -13.68637 -13.49738 -13.30353 -13.06031 -12.97945 -12.84994 -12.64300 -12.53792 -12.47955 -12.15154 -11.92302 -11.77325 -11.32403 -11.16264 -10.90383 -10.80689 -10.61227 -10.26876 -10.23914 -10.09543 -9.81604 -9.78957 -9.59735 -9.22504 -9.07778 -8.95072 -8.37898 -8.22869 -6.92144 -5.91789 -3.08790 0.47958 0.89372 2.72711 3.08902 3.39467 3.49717 3.50892 3.64317 3.82991 4.24355 4.30707 4.42310 4.49508 4.68423 4.79105 4.93653 5.02780 5.08968 5.16725 5.22495 5.25161 5.29012 5.32789 5.38892 5.49316 5.51749 5.57620 5.68726 5.75099 5.77900 5.82544 5.90640 5.96686 6.00978 6.12053 6.17474 6.19711 6.28545 6.33600 6.50049 6.51976 6.66297 6.79879 6.87917 7.08202 7.34604 7.46886 7.68161 7.79203 7.90189 8.21602 8.31393 9.05422 9.77040 10.31908 11.17178 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003129 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.054656 B = 8945.653502 C =10038.976395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.157 4.157 4 C 0.124 3.876 5 C -0.105 4.105 6 N -0.454 5.454 7 C 0.099 3.901 8 C 0.565 3.435 9 O -0.531 6.531 10 N -0.587 5.587 11 C 0.079 3.921 12 C -0.124 4.124 13 C 0.077 3.923 14 H 0.053 0.947 15 O -0.389 6.389 16 C 0.042 3.958 17 C 0.137 3.863 18 N -0.588 5.588 19 C -0.270 4.270 20 H 0.080 0.920 21 C 0.013 3.987 22 N -0.875 5.875 23 Si 0.877 3.123 24 H -0.288 1.288 25 H -0.277 1.277 26 H -0.293 1.293 27 C 0.140 3.860 28 H 0.037 0.963 29 C 0.120 3.880 30 C -0.120 4.120 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.026 0.974 46 H 0.255 0.745 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 22.169 0.537 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.176 4.176 4 C -0.015 4.015 5 C -0.162 4.162 6 N -0.167 5.167 7 C -0.039 4.039 8 C 0.350 3.650 9 O -0.407 6.407 10 N -0.319 5.319 11 C -0.044 4.044 12 C -0.163 4.163 13 C 0.017 3.983 14 H 0.071 0.929 15 O -0.308 6.308 16 C -0.036 4.036 17 C 0.011 3.989 18 N -0.312 5.312 19 C -0.398 4.398 20 H 0.097 0.903 21 C -0.188 4.188 22 N -0.517 5.517 23 Si 0.705 3.295 24 H -0.215 1.215 25 H -0.202 1.202 26 H -0.220 1.220 27 C 0.032 3.968 28 H 0.054 0.946 29 C -0.002 4.002 30 C -0.141 4.141 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.844 21.468 0.428 24.055 hybrid contribution -0.169 -0.769 0.903 1.198 sum -11.013 20.699 1.331 23.484 Atomic orbital electron populations 1.20844 0.89662 1.03631 1.03184 1.20363 0.97124 0.92509 0.95136 1.22014 0.94716 0.98804 1.02115 1.21491 0.91363 0.94137 0.94529 1.20755 1.00512 0.91534 1.03449 1.67465 1.38603 0.97796 1.12858 1.21275 0.91789 0.92011 0.98780 1.17883 0.82133 0.87131 0.77818 1.90805 1.69302 1.30160 1.50439 1.48099 1.05522 1.11588 1.66665 1.22975 0.97877 0.87269 0.96263 1.21924 0.97489 0.97945 0.98934 1.22493 0.90949 0.95122 0.89713 0.92906 1.87749 1.46472 1.55822 1.40801 1.23155 0.90963 0.89574 0.99865 1.21334 0.91615 0.93865 0.92109 1.44205 1.30643 1.29475 1.26925 1.19112 1.30531 0.97100 0.93031 0.90254 1.24650 1.02817 0.94878 0.96445 1.70383 1.41982 1.11250 1.28060 0.86636 0.80400 0.77612 0.84816 1.21472 1.20195 1.22000 1.21242 0.91110 0.88818 0.95664 0.94553 1.21870 0.93983 0.86223 0.98112 1.22004 0.93715 0.99659 0.98744 0.90223 0.90607 0.90841 0.84465 0.90056 0.90559 0.90011 0.83511 0.91845 0.91382 0.90455 0.89977 0.93970 0.89263 0.95549 0.93562 0.88063 0.90538 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.06 36.01 0.36 -0.31 16 2 C -0.04 -0.39 5.91 -104.35 -0.62 -1.00 16 3 C -0.16 -1.23 9.45 -39.32 -0.37 -1.60 16 4 C 0.12 1.14 6.78 -82.61 -0.56 0.58 16 5 C -0.11 -0.62 10.17 36.01 0.37 -0.26 16 6 N -0.45 -5.50 6.00 -6.06 -0.04 -5.54 16 7 C 0.10 1.39 6.59 -83.01 -0.55 0.84 16 8 C 0.56 10.00 7.64 -12.18 -0.09 9.91 16 9 O -0.53 -11.05 15.77 5.35 0.08 -10.97 16 10 N -0.59 -10.30 2.98 -173.68 -0.52 -10.82 16 11 C 0.08 1.13 5.82 -3.67 -0.02 1.11 16 12 C -0.12 -1.91 5.82 -26.65 -0.16 -2.06 16 13 C 0.08 1.47 2.48 -26.63 -0.07 1.40 16 14 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 15 O -0.39 -7.91 10.49 -35.23 -0.37 -8.28 16 16 C 0.04 0.85 6.94 37.03 0.26 1.10 16 17 C 0.14 3.30 5.72 -3.71 -0.02 3.28 16 18 N -0.59 -14.94 3.08 -164.63 -0.51 -15.45 16 19 C -0.27 -7.40 8.93 -15.06 -0.13 -7.53 16 20 H 0.08 2.14 6.18 -52.49 -0.32 1.81 16 21 C 0.01 0.35 4.45 -17.43 -0.08 0.27 16 22 N -0.87 -25.52 11.93 55.49 0.66 -24.86 16 23 Si 0.88 21.51 29.68 -169.99 -5.05 16.47 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.14 3.09 3.03 -67.53 -0.20 2.89 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 C 0.12 2.47 4.44 -3.71 -0.02 2.45 16 30 C -0.12 -1.44 9.34 -39.05 -0.36 -1.80 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.15 1.93 4.06 -84.42 -0.34 1.59 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.32 6.11 -51.93 -0.32 2.00 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.10 2.36 6.65 -51.93 -0.35 2.02 16 48 H 0.08 1.57 7.50 -51.93 -0.39 1.19 16 49 H 0.15 1.77 7.66 -52.49 -0.40 1.37 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -33.12 383.17 -9.81 -42.93 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.59 Total: 1.48 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.27 Total: 9.27 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.40 Total: -56.67 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.29 Total: -19.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.05 Total: 16.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.12 -9.81 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074282537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.938 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds