Wall clock time and date at job start Wed Apr 1 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35923 * 116.99948 * 2 1 4 4 C 1.38848 * 120.40513 * 359.97438 * 3 2 1 5 5 N 1.31881 * 120.99688 * 180.02562 * 4 3 2 6 6 C 1.31677 * 121.94539 * 359.70263 * 5 4 3 7 7 C 1.39532 * 120.68989 * 0.58526 * 6 5 4 8 8 C 1.47855 * 120.53310 * 179.70347 * 7 6 5 9 9 O 1.21554 * 119.99705 * 173.91414 * 8 7 6 10 10 N 1.34779 * 119.99580 * 353.91246 * 8 7 6 11 11 C 1.46497 * 119.99272 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.95818 * 336.40812 * 11 10 8 13 13 C 1.53951 * 113.66237 * 107.81438 * 11 10 8 14 14 C 1.53958 * 87.29784 * 139.20071 * 13 11 10 15 15 H 1.09000 * 113.66408 * 220.79948 * 14 13 11 16 16 N 1.46497 * 113.66143 * 89.73912 * 14 13 11 17 17 C 1.36942 * 119.99987 * 107.81283 * 16 14 13 18 18 H 1.07996 * 119.99417 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99888 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99981 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47136 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47347 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47204 * 240.00099 * 21 19 17 25 25 C 1.52907 * 86.77913 * 335.26778 * 14 13 11 26 26 C 1.52913 * 121.13365 * 150.61393 * 25 14 13 27 27 C 1.53950 * 86.78156 * 100.82335 * 26 25 14 28 28 C 1.53065 * 121.06841 * 259.15313 * 25 14 13 29 29 C 1.38844 * 120.40321 * 179.97438 * 3 2 1 30 30 C 1.50696 * 120.87955 * 359.96200 * 29 3 2 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47309 * 300.00257 * 1 2 3 33 33 H 1.09000 * 109.46961 * 60.00169 * 1 2 3 34 34 H 1.07996 * 119.50296 * 0.03869 * 4 3 2 35 35 H 1.07996 * 119.65872 * 180.28778 * 6 5 4 36 36 H 0.96997 * 120.00248 * 0.02562 * 10 8 7 37 37 H 1.08999 * 113.58067 * 24.60017 * 13 11 10 38 38 H 1.08995 * 113.65207 * 253.81750 * 13 11 10 39 39 H 0.97000 * 120.00153 * 287.82055 * 16 14 13 40 40 H 0.97001 * 120.00457 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.66615 * 346.34678 * 26 25 14 42 42 H 1.09002 * 113.66089 * 215.29432 * 26 25 14 43 43 H 1.09000 * 113.57951 * 139.33917 * 27 26 25 44 44 H 1.09001 * 113.57503 * 270.04919 * 27 26 25 45 45 H 1.09002 * 113.66171 * 144.67831 * 28 25 14 46 46 H 1.09000 * 113.71532 * 13.58111 * 28 25 14 47 47 H 1.09002 * 109.47048 * 263.67964 * 30 29 3 48 48 H 1.08994 * 109.47620 * 23.68399 * 30 29 3 49 49 H 1.09011 * 109.47063 * 143.68203 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 -0.0010 6 6 3.1952 3.6891 0.0047 7 6 4.0199 2.5636 -0.0006 8 6 5.4912 2.7104 -0.0007 9 8 6.1998 1.7286 0.1063 10 7 6.0464 3.9327 -0.1194 11 6 7.5041 4.0781 -0.1189 12 1 8.0138 3.2506 0.3746 13 6 8.0904 4.4304 -1.4981 14 6 9.0356 5.4014 -0.7674 15 1 9.1743 6.3501 -1.2857 16 7 10.2989 4.7889 -0.3490 17 6 11.4622 5.1074 -0.9977 18 1 11.4481 5.8104 -1.8174 19 6 12.6591 4.5267 -0.6017 20 7 12.6761 3.6695 0.3970 21 14 14.2459 4.9616 -1.4861 22 1 13.9589 5.9410 -2.5649 23 1 15.2044 5.5556 -0.5198 24 1 14.8358 3.7337 -2.0772 25 6 7.9833 5.4556 0.3407 26 6 8.3795 5.7100 1.7955 27 6 7.9267 7.1645 1.5737 28 6 7.0141 6.6350 0.4526 29 6 3.4321 1.2935 0.0005 30 6 4.2809 0.0484 0.0020 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2197 2.3226 -0.0003 35 1 3.6366 4.6748 0.0088 36 1 5.4808 4.7162 -0.2044 37 1 7.3808 4.9276 -2.1595 38 1 8.6059 3.5993 -1.9793 39 1 10.3115 4.1577 0.3874 40 1 13.5124 3.2634 0.6735 41 1 9.4486 5.6081 1.9821 42 1 7.7687 5.1668 2.5167 43 1 7.3809 7.5850 2.4183 44 1 8.7218 7.8189 1.2161 45 1 6.0189 6.3523 0.7957 46 1 6.9938 7.2712 -0.4322 47 1 4.5786 -0.1872 1.0238 48 1 3.7083 -0.7823 -0.4103 49 1 5.1701 0.2141 -0.6065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078658546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:47 Heat of formation + Delta-G solvation = 25.104659 kcal Electronic energy + Delta-G solvation = -30425.091848 eV Core-core repulsion = 26354.645166 eV Total energy + Delta-G solvation = -4070.446682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 58.70 seconds Orbital eigenvalues (eV) -41.32570 -40.49451 -39.12551 -38.07229 -35.11322 -34.35145 -33.75590 -32.58602 -30.92751 -29.56505 -28.08489 -27.94711 -25.54443 -25.04105 -24.18113 -23.87796 -22.83343 -22.15946 -20.67568 -20.35285 -18.69930 -17.81113 -17.65583 -17.05192 -16.67766 -16.56336 -16.37007 -15.79031 -15.20390 -15.03849 -14.84824 -14.55504 -14.37206 -13.94271 -13.81010 -13.26391 -13.06369 -12.95157 -12.92295 -12.68176 -12.50838 -12.44991 -12.21133 -12.06569 -11.94516 -11.85000 -11.57107 -11.39045 -10.90635 -10.84207 -10.74496 -10.23662 -10.14084 -10.04012 -9.86480 -9.74266 -9.65627 -9.53763 -9.37535 -8.88200 -8.80685 -8.63553 -7.00933 -5.80024 -3.09826 0.33910 0.89756 2.64493 2.76420 3.25896 3.42232 3.47945 3.50283 3.55531 3.99060 4.16753 4.42717 4.46584 4.50875 4.64252 4.67920 4.75829 4.85520 4.89008 4.92854 4.99820 5.06023 5.18154 5.31148 5.32798 5.42763 5.49683 5.64312 5.69980 5.79835 5.90058 5.92155 5.94542 5.96368 6.00438 6.04041 6.12387 6.16643 6.34412 6.44081 6.56906 6.62734 6.69809 6.76045 6.78302 6.86313 7.06125 7.48801 7.58412 7.69437 8.24371 8.37959 9.49318 10.05176 10.39615 11.41947 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002434 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.005901 B =11501.832395 C =12506.481089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.065 3.935 4 C 0.037 3.963 5 N -0.457 5.457 6 C 0.100 3.900 7 C -0.150 4.150 8 C 0.558 3.442 9 O -0.521 6.521 10 N -0.706 5.706 11 C 0.139 3.861 12 H 0.117 0.883 13 C -0.182 4.182 14 C 0.197 3.803 15 H 0.069 0.931 16 N -0.700 5.700 17 C -0.244 4.244 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.117 4.117 29 C -0.011 4.011 30 C -0.115 4.115 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.082 -1.094 0.540 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.018 3.982 4 C -0.120 4.120 5 N -0.166 5.166 6 C -0.059 4.059 7 C -0.156 4.156 8 C 0.344 3.656 9 O -0.398 6.398 10 N -0.356 5.356 11 C 0.035 3.965 12 H 0.135 0.865 13 C -0.224 4.224 14 C 0.084 3.916 15 H 0.087 0.913 16 N -0.338 5.338 17 C -0.374 4.374 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.126 4.126 26 C -0.163 4.163 27 C -0.170 4.170 28 C -0.154 4.154 29 C -0.020 4.020 30 C -0.171 4.171 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.804 -1.213 0.515 25.838 hybrid contribution 0.647 -0.279 -0.232 0.742 sum -25.157 -1.492 0.283 25.203 Atomic orbital electron populations 1.23152 0.77934 1.04558 1.01561 1.86110 1.21543 1.25506 1.88565 1.19776 0.92352 0.86060 1.00018 1.23049 1.00660 0.87091 1.01204 1.67514 1.11870 1.25982 1.11264 1.22818 0.88734 0.98074 0.96317 1.20850 0.95195 0.93718 1.05805 1.17939 0.86436 0.84037 0.77221 1.90776 1.62914 1.37241 1.48919 1.45994 1.08691 1.07659 1.73288 1.22495 0.77416 0.98070 0.98486 0.86535 1.24309 0.99904 1.02216 0.96004 1.20627 0.84947 0.94810 0.91227 0.91307 1.42118 1.01073 1.51057 1.39526 1.19288 0.85248 1.21096 1.11815 0.90931 1.24764 0.97851 0.99438 0.98602 1.69672 1.26050 1.32461 1.29402 0.86117 0.83805 0.77508 0.78722 1.20514 1.21862 1.21841 1.23661 0.98381 0.93298 0.97308 1.22631 1.02689 0.95579 0.95391 1.22729 0.99182 0.97217 0.97902 1.22566 0.96883 0.96672 0.99321 1.19889 0.90764 0.96064 0.95290 1.20946 0.99635 0.92375 1.04167 0.87723 0.92335 0.92350 0.82153 0.82241 0.76921 0.91187 0.90818 0.77835 0.93427 0.89846 0.91087 0.92268 0.90029 0.90803 0.91297 0.90065 0.91474 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.79 9.57 -19.50 -0.19 -2.98 16 3 C 0.07 0.69 6.68 -39.13 -0.26 0.43 16 4 C 0.04 0.35 10.21 -17.30 -0.18 0.17 16 5 N -0.46 -4.97 10.34 -12.80 -0.13 -5.10 16 6 C 0.10 1.06 10.69 -17.14 -0.18 0.88 16 7 C -0.15 -1.86 5.89 -104.84 -0.62 -2.48 16 8 C 0.56 8.11 7.73 -12.32 -0.10 8.02 16 9 O -0.52 -9.34 13.10 5.32 0.07 -9.27 16 10 N -0.71 -9.22 5.21 -54.31 -0.28 -9.51 16 11 C 0.14 2.24 4.03 -67.48 -0.27 1.96 16 12 H 0.12 2.27 7.46 -51.93 -0.39 1.88 16 13 C -0.18 -3.12 7.68 -25.74 -0.20 -3.32 16 14 C 0.20 3.73 4.36 -67.48 -0.29 3.43 16 15 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 16 N -0.70 -16.84 4.85 -52.99 -0.26 -17.10 16 17 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.12 -1.89 0.92 -154.63 -0.14 -2.04 16 26 C -0.13 -1.96 7.62 -26.28 -0.20 -2.16 16 27 C -0.13 -1.75 8.08 -25.75 -0.21 -1.96 16 28 C -0.12 -1.39 7.16 -26.20 -0.19 -1.58 16 29 C -0.01 -0.14 5.97 -103.76 -0.62 -0.75 16 30 C -0.12 -1.43 8.70 36.00 0.31 -1.11 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 33 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 34 H 0.16 1.01 6.30 -52.49 -0.33 0.68 16 35 H 0.16 1.28 6.46 -52.49 -0.34 0.94 16 36 H 0.40 4.02 5.13 -40.82 -0.21 3.81 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.39 10.04 7.62 -40.82 -0.31 9.73 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 0.73 7.03 -51.93 -0.37 0.37 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 0.74 7.44 -51.93 -0.39 0.35 16 49 H 0.10 1.44 5.95 -51.92 -0.31 1.14 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -32.17 393.71 -8.73 -40.90 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -7.18 Total: 13.47 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.40 Total: -6.51 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.05 Total: -58.64 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.12 Total: -12.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.17 -8.73 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078658546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.005 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 58.70 seconds