Wall clock time and date at job start Wed Apr 1 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35923 * 116.99948 * 2 1 4 4 C 1.38848 * 120.40513 * 359.97438 * 3 2 1 5 5 N 1.31881 * 120.99688 * 180.02562 * 4 3 2 6 6 C 1.31677 * 121.94539 * 359.70263 * 5 4 3 7 7 C 1.39532 * 120.68989 * 0.58526 * 6 5 4 8 8 C 1.47855 * 120.53310 * 179.70347 * 7 6 5 9 9 O 1.21554 * 119.99705 * 173.91414 * 8 7 6 10 10 N 1.34779 * 119.99580 * 353.91246 * 8 7 6 11 11 C 1.46497 * 119.99272 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.95818 * 336.40812 * 11 10 8 13 13 C 1.53951 * 113.66237 * 107.81438 * 11 10 8 14 14 C 1.53958 * 87.29784 * 139.20071 * 13 11 10 15 15 H 1.09000 * 113.66408 * 220.79948 * 14 13 11 16 16 N 1.46497 * 113.66143 * 89.73912 * 14 13 11 17 17 C 1.36942 * 119.99987 * 107.81283 * 16 14 13 18 18 H 1.07996 * 119.99417 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99888 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99981 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47136 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47347 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47204 * 240.00099 * 21 19 17 25 25 C 1.52907 * 86.77913 * 335.26778 * 14 13 11 26 26 C 1.52913 * 121.13365 * 150.61393 * 25 14 13 27 27 C 1.53950 * 86.78156 * 100.82335 * 26 25 14 28 28 C 1.53065 * 121.06841 * 259.15313 * 25 14 13 29 29 C 1.38844 * 120.40321 * 179.97438 * 3 2 1 30 30 C 1.50696 * 120.87955 * 359.96200 * 29 3 2 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47309 * 300.00257 * 1 2 3 33 33 H 1.09000 * 109.46961 * 60.00169 * 1 2 3 34 34 H 1.07996 * 119.50296 * 0.03869 * 4 3 2 35 35 H 1.07996 * 119.65872 * 180.28778 * 6 5 4 36 36 H 0.96997 * 120.00248 * 0.02562 * 10 8 7 37 37 H 1.08999 * 113.58067 * 24.60017 * 13 11 10 38 38 H 1.08995 * 113.65207 * 253.81750 * 13 11 10 39 39 H 0.97000 * 120.00153 * 287.82055 * 16 14 13 40 40 H 0.97001 * 120.00457 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.66615 * 346.34678 * 26 25 14 42 42 H 1.09002 * 113.66089 * 215.29432 * 26 25 14 43 43 H 1.09000 * 113.57951 * 139.33917 * 27 26 25 44 44 H 1.09001 * 113.57503 * 270.04919 * 27 26 25 45 45 H 1.09002 * 113.66171 * 144.67831 * 28 25 14 46 46 H 1.09000 * 113.71532 * 13.58111 * 28 25 14 47 47 H 1.09002 * 109.47048 * 263.67964 * 30 29 3 48 48 H 1.08994 * 109.47620 * 23.68399 * 30 29 3 49 49 H 1.09011 * 109.47063 * 143.68203 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 -0.0010 6 6 3.1952 3.6891 0.0047 7 6 4.0199 2.5636 -0.0006 8 6 5.4912 2.7104 -0.0007 9 8 6.1998 1.7286 0.1063 10 7 6.0464 3.9327 -0.1194 11 6 7.5041 4.0781 -0.1189 12 1 8.0138 3.2506 0.3746 13 6 8.0904 4.4304 -1.4981 14 6 9.0356 5.4014 -0.7674 15 1 9.1743 6.3501 -1.2857 16 7 10.2989 4.7889 -0.3490 17 6 11.4622 5.1074 -0.9977 18 1 11.4481 5.8104 -1.8174 19 6 12.6591 4.5267 -0.6017 20 7 12.6761 3.6695 0.3970 21 14 14.2459 4.9616 -1.4861 22 1 13.9589 5.9410 -2.5649 23 1 15.2044 5.5556 -0.5198 24 1 14.8358 3.7337 -2.0772 25 6 7.9833 5.4556 0.3407 26 6 8.3795 5.7100 1.7955 27 6 7.9267 7.1645 1.5737 28 6 7.0141 6.6350 0.4526 29 6 3.4321 1.2935 0.0005 30 6 4.2809 0.0484 0.0020 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2197 2.3226 -0.0003 35 1 3.6366 4.6748 0.0088 36 1 5.4808 4.7162 -0.2044 37 1 7.3808 4.9276 -2.1595 38 1 8.6059 3.5993 -1.9793 39 1 10.3115 4.1577 0.3874 40 1 13.5124 3.2634 0.6735 41 1 9.4486 5.6081 1.9821 42 1 7.7687 5.1668 2.5167 43 1 7.3809 7.5850 2.4183 44 1 8.7218 7.8189 1.2161 45 1 6.0189 6.3523 0.7957 46 1 6.9938 7.2712 -0.4322 47 1 4.5786 -0.1872 1.0238 48 1 3.7083 -0.7823 -0.4103 49 1 5.1701 0.2141 -0.6065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078658546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:28 Heat of formation + Delta-G solvation = 3.455190 kcal Electronic energy + Delta-G solvation = -30426.030639 eV Core-core repulsion = 26354.645166 eV Total energy + Delta-G solvation = -4071.385473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 14.91 seconds Orbital eigenvalues (eV) -42.25853 -41.65455 -40.15457 -38.89394 -36.48861 -35.81631 -34.71684 -34.19743 -32.09829 -31.15093 -28.94929 -28.48234 -26.73616 -26.49914 -25.55291 -25.13318 -24.02843 -23.22860 -21.78481 -21.64661 -19.68230 -19.38690 -18.58859 -18.51705 -17.65891 -17.37636 -17.01581 -16.99812 -16.65119 -16.30443 -15.98660 -15.91440 -15.47446 -15.15902 -14.87102 -14.69342 -14.32468 -13.99340 -13.92768 -13.82035 -13.75911 -13.52801 -13.30896 -13.15985 -13.06519 -12.84652 -12.73717 -12.66829 -12.54409 -12.36784 -12.14300 -11.95706 -11.78004 -11.32696 -11.28472 -11.06387 -10.87642 -10.74589 -10.65120 -10.42258 -9.87507 -9.53446 -9.00287 -7.94495 -5.23385 -0.52384 0.08141 1.46973 1.47921 1.57777 1.73058 1.87758 2.32179 2.54872 2.67257 3.25971 3.37241 3.41094 3.42711 3.56395 3.61205 3.64612 3.80119 3.97852 3.99916 4.05793 4.09330 4.20802 4.24664 4.36061 4.41084 4.52643 4.59068 4.63368 4.67293 4.67871 4.77837 4.79655 4.86576 4.91249 5.01755 5.07177 5.12073 5.16076 5.16851 5.26489 5.31594 5.39823 5.45229 5.54415 5.62904 5.73976 6.14234 6.27398 6.49518 6.70882 7.15970 7.32885 8.09193 8.31114 9.28988 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002434 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.005901 B =11501.832395 C =12506.481089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.068 3.932 4 C 0.047 3.953 5 N -0.465 5.465 6 C 0.106 3.894 7 C -0.163 4.163 8 C 0.556 3.444 9 O -0.565 6.565 10 N -0.688 5.688 11 C 0.148 3.852 12 H 0.074 0.926 13 C -0.171 4.171 14 C 0.179 3.821 15 H 0.075 0.925 16 N -0.715 5.715 17 C -0.237 4.237 18 H 0.081 0.919 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.298 1.298 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.096 4.096 29 C -0.035 4.035 30 C -0.107 4.107 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.196 0.804 35 H 0.188 0.812 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.029 1.222 -0.215 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.020 3.980 4 C -0.110 4.110 5 N -0.174 5.174 6 C -0.053 4.053 7 C -0.168 4.168 8 C 0.344 3.656 9 O -0.446 6.446 10 N -0.340 5.340 11 C 0.043 3.957 12 H 0.092 0.908 13 C -0.213 4.213 14 C 0.068 3.932 15 H 0.093 0.907 16 N -0.352 5.352 17 C -0.369 4.369 18 H 0.099 0.901 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.225 1.225 25 C -0.115 4.115 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.134 4.134 29 C -0.044 4.044 30 C -0.163 4.163 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.212 0.788 35 H 0.205 0.795 36 H 0.253 0.747 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.829 1.169 -0.275 29.853 hybrid contribution 1.700 -1.073 -0.001 2.010 sum -28.128 0.096 -0.277 28.130 Atomic orbital electron populations 1.23516 0.75491 1.06320 1.02962 1.86103 1.24056 1.24976 1.88268 1.19763 0.91644 0.87105 0.99511 1.23589 1.02155 0.86207 0.99020 1.67634 1.11717 1.26465 1.11609 1.23161 0.88603 0.98414 0.95083 1.20654 0.93568 0.94683 1.07881 1.18351 0.87461 0.83620 0.76181 1.90771 1.64183 1.38739 1.50861 1.45696 1.07353 1.08171 1.72782 1.21997 0.78982 0.97301 0.97404 0.90821 1.24181 0.99806 1.00604 0.96676 1.20896 0.84002 0.94870 0.93425 0.90735 1.42260 1.02456 1.51331 1.39124 1.19703 0.86251 1.19757 1.11164 0.90123 1.25574 1.01160 1.00259 0.99934 1.69842 1.26251 1.34431 1.31537 0.85082 0.79810 0.77100 0.77826 1.18664 1.22152 1.22539 1.23493 0.97977 0.94128 0.95938 1.22669 1.00315 0.98436 0.95840 1.22683 0.99266 0.94944 0.99355 1.22613 0.97107 0.94055 0.99614 1.20000 0.91998 0.95799 0.96591 1.20776 0.98965 0.93460 1.03149 0.86022 0.90873 0.90855 0.78779 0.79527 0.74675 0.87747 0.94328 0.79564 0.94161 0.94061 0.90160 0.89711 0.91195 0.87500 0.89285 0.91009 0.90420 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.25 9.57 -92.68 -0.89 -6.14 16 3 C 0.07 1.29 6.68 22.56 0.15 1.44 16 4 C 0.05 0.74 10.21 84.83 0.87 1.60 16 5 N -0.47 -8.45 10.34 -194.40 -2.01 -10.46 16 6 C 0.11 1.93 10.69 85.03 0.91 2.84 16 7 C -0.16 -3.85 5.89 -20.00 -0.12 -3.97 16 8 C 0.56 16.25 7.73 86.79 0.67 16.92 16 9 O -0.57 -21.55 13.10 -3.89 -0.05 -21.60 16 10 N -0.69 -17.07 5.21 -444.01 -2.31 -19.38 16 11 C 0.15 4.82 4.03 45.28 0.18 5.01 16 12 H 0.07 3.09 7.46 -2.39 -0.02 3.08 16 13 C -0.17 -5.86 7.68 31.23 0.24 -5.62 16 14 C 0.18 6.79 4.36 45.28 0.20 6.99 16 15 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 16 N -0.72 -35.95 4.85 -321.56 -1.56 -37.51 16 17 C -0.24 -13.10 9.97 84.03 0.84 -12.26 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 21 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 C -0.11 -3.36 0.92 -52.26 -0.05 -3.40 16 26 C -0.13 -4.22 7.62 30.89 0.24 -3.98 16 27 C -0.13 -2.97 8.08 31.23 0.25 -2.72 16 28 C -0.10 -1.91 7.16 30.94 0.22 -1.69 16 29 C -0.03 -0.84 5.97 -19.30 -0.12 -0.96 16 30 C -0.11 -2.80 8.70 71.23 0.62 -2.18 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.26 7.67 -2.39 -0.02 0.24 16 33 H 0.07 0.26 7.67 -2.39 -0.02 0.24 16 34 H 0.20 1.55 6.30 -2.91 -0.02 1.54 16 35 H 0.19 2.14 6.46 -2.91 -0.02 2.12 16 36 H 0.41 6.94 5.13 -92.71 -0.48 6.46 16 37 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.37 20.70 7.62 -92.71 -0.71 19.99 16 40 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.04 1.64 7.58 -2.39 -0.02 1.62 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.11 1.50 7.03 -2.39 -0.02 1.48 16 46 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.08 1.76 7.44 -2.39 -0.02 1.74 16 49 H 0.08 2.36 5.95 -2.38 -0.01 2.34 16 Total: -1.00 -75.66 393.71 1.99 -73.67 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.19 Total: 37.89 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 6.68 Total: -4.82 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -5.60 Total: -127.73 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.94 Total: -27.73 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.66 1.99 -73.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078658546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.128 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.91 seconds