Wall clock time and date at job start Wed Apr 1 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35922 * 117.00085 * 2 1 4 4 C 1.38855 * 120.40501 * 0.02562 * 3 2 1 5 5 N 1.31874 * 120.99767 * 179.97438 * 4 3 2 6 6 C 1.31683 * 121.94571 * 359.72703 * 5 4 3 7 7 C 1.39521 * 120.68752 * 0.53888 * 6 5 4 8 8 C 1.47854 * 120.52974 * 179.75553 * 7 6 5 9 9 O 1.21557 * 120.00207 * 173.91691 * 8 7 6 10 10 N 1.34774 * 120.00338 * 353.90919 * 8 7 6 11 11 C 1.46492 * 120.00547 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.94872 * 23.59777 * 11 10 8 13 13 C 1.53956 * 113.66491 * 252.19251 * 11 10 8 14 14 C 1.53952 * 87.29245 * 270.25665 * 13 11 10 15 15 H 1.09003 * 113.66158 * 220.79000 * 14 13 11 16 16 N 1.46505 * 113.74434 * 89.75046 * 14 13 11 17 17 C 1.36941 * 119.99775 * 107.76750 * 16 14 13 18 18 H 1.08001 * 120.00060 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99720 * 180.02562 * 17 16 14 20 20 N 1.31628 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00004 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47340 * 59.99573 * 21 19 17 23 23 H 1.48497 * 109.47165 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47134 * 299.99707 * 21 19 17 25 25 C 1.52904 * 86.78507 * 335.26540 * 14 13 11 26 26 C 1.52910 * 121.13704 * 150.61796 * 25 14 13 27 27 C 1.53946 * 86.78109 * 100.81961 * 26 25 14 28 28 C 1.52902 * 121.13800 * 259.17816 * 25 14 13 29 29 C 1.38842 * 120.40877 * 180.02562 * 3 2 1 30 30 C 1.50699 * 120.87835 * 359.97438 * 29 3 2 31 31 H 1.09007 * 109.47408 * 60.00372 * 1 2 3 32 32 H 1.09005 * 109.47336 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47358 * 300.00165 * 1 2 3 34 34 H 1.07997 * 119.49585 * 359.96057 * 4 3 2 35 35 H 1.08001 * 119.65689 * 180.27090 * 6 5 4 36 36 H 0.97004 * 119.99276 * 0.02562 * 10 8 7 37 37 H 1.08995 * 113.57842 * 155.65559 * 13 11 10 38 38 H 1.08997 * 113.57978 * 24.86148 * 13 11 10 39 39 H 0.97001 * 119.99818 * 287.76955 * 16 14 13 40 40 H 0.96996 * 119.99881 * 180.02562 * 20 19 17 41 41 H 1.09007 * 113.66053 * 346.34525 * 26 25 14 42 42 H 1.09003 * 113.66456 * 215.29103 * 26 25 14 43 43 H 1.09004 * 113.58035 * 139.34159 * 27 26 25 44 44 H 1.09001 * 113.58206 * 270.12916 * 27 26 25 45 45 H 1.09002 * 113.66620 * 144.71028 * 28 25 14 46 46 H 1.09006 * 113.66134 * 13.65540 * 28 25 14 47 47 H 1.09004 * 109.47487 * 263.69157 * 30 29 3 48 48 H 1.08999 * 109.47471 * 23.68942 * 30 29 3 49 49 H 1.09004 * 109.47486 * 143.69025 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6891 0.0064 7 6 4.0198 2.5637 0.0005 8 6 5.4910 2.7104 0.0011 9 8 6.1998 1.7286 0.1075 10 7 6.0464 3.9328 -0.1165 11 6 7.5041 4.0782 -0.1165 12 1 8.0218 3.1695 -0.4235 13 6 8.0630 4.7010 1.1758 14 6 7.8903 6.0744 0.5019 15 1 8.7165 6.7604 0.6888 16 7 6.5790 6.6850 0.7345 17 6 6.4643 7.7621 1.5724 18 1 7.3404 8.1617 2.0613 19 6 5.2218 8.3403 1.7932 20 7 4.1540 7.8535 1.1969 21 14 5.0653 9.8099 2.9355 22 1 5.8949 10.9284 2.4198 23 1 3.6446 10.2372 3.0006 24 1 5.5320 9.4330 4.2939 25 6 7.9955 5.3364 -0.8331 26 6 7.2893 5.8605 -2.0841 27 6 8.6572 6.4188 -2.5166 28 6 9.2980 5.3325 -1.6339 29 6 3.4320 1.2936 -0.0005 30 6 4.2809 0.0485 -0.0005 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2196 2.3226 0.0003 35 1 3.6366 4.6748 0.0111 36 1 5.4808 4.7163 -0.2011 37 1 9.1027 4.4392 1.3718 38 1 7.4189 4.5569 2.0433 39 1 5.7922 6.3263 0.2951 40 1 3.2859 8.2578 1.3509 41 1 6.5475 6.6319 -1.8769 42 1 6.9124 5.0726 -2.7362 43 1 8.8626 6.2941 -3.5798 44 1 8.8451 7.4333 -2.1650 45 1 9.4857 4.3962 -2.1595 46 1 10.1610 5.6821 -1.0672 47 1 4.5793 -0.1879 1.0208 48 1 3.7080 -0.7820 -0.4130 49 1 5.1696 0.2146 -0.6095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078658548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:58 Heat of formation + Delta-G solvation = 28.806909 kcal Electronic energy + Delta-G solvation = -31298.625398 eV Core-core repulsion = 27228.339258 eV Total energy + Delta-G solvation = -4070.286140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 11.92 seconds Orbital eigenvalues (eV) -41.07015 -40.45488 -38.91590 -37.78978 -35.32776 -33.90737 -33.45375 -32.51059 -30.59231 -29.72859 -27.86840 -27.67544 -25.47929 -24.89694 -24.15697 -23.84915 -22.59606 -22.00819 -20.63409 -20.08478 -18.67480 -17.71385 -17.44230 -17.00302 -16.26219 -16.22395 -16.11395 -15.63650 -15.16445 -14.84563 -14.73632 -14.40465 -14.25884 -13.98644 -13.49611 -13.20696 -13.02196 -12.83907 -12.70548 -12.61977 -12.50181 -12.22018 -12.11374 -11.91756 -11.85023 -11.61130 -11.46548 -11.35737 -10.91688 -10.87339 -10.68543 -10.24166 -10.07286 -9.96644 -9.75564 -9.70237 -9.45417 -9.41137 -9.15600 -8.90375 -8.51691 -8.46887 -7.08760 -5.87933 -3.16784 0.66588 1.25326 2.89138 3.01096 3.39973 3.42000 3.45903 3.46509 3.88047 4.36479 4.46729 4.50621 4.74361 4.76311 4.81389 4.89339 4.89967 5.00570 5.04303 5.14790 5.18394 5.18932 5.30871 5.33023 5.39933 5.64206 5.66664 5.78955 5.83569 5.84595 5.89486 5.96601 6.00234 6.02706 6.12479 6.16304 6.21155 6.33699 6.37118 6.50852 6.52085 6.61190 6.67929 6.79587 6.92603 7.03880 7.07421 7.64344 7.80940 7.93900 8.30895 8.44309 9.41877 9.94591 10.28531 11.34730 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.003911 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.694666 B = 7158.176485 C = 9283.761190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.055 3.945 4 C 0.041 3.959 5 N -0.450 5.450 6 C 0.117 3.883 7 C -0.157 4.157 8 C 0.567 3.433 9 O -0.538 6.538 10 N -0.689 5.689 11 C 0.137 3.863 12 H 0.094 0.906 13 C -0.185 4.185 14 C 0.191 3.809 15 H 0.067 0.933 16 N -0.699 5.699 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.129 4.129 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.106 4.106 29 C -0.014 4.014 30 C -0.110 4.110 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.407 0.593 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.378 0.622 40 H 0.259 0.741 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -13.208 -6.333 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.008 3.992 4 C -0.117 4.117 5 N -0.158 5.158 6 C -0.042 4.042 7 C -0.162 4.162 8 C 0.353 3.647 9 O -0.418 6.418 10 N -0.341 5.341 11 C 0.032 3.968 12 H 0.112 0.888 13 C -0.227 4.227 14 C 0.079 3.921 15 H 0.085 0.915 16 N -0.338 5.338 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.132 4.132 26 C -0.165 4.165 27 C -0.171 4.171 28 C -0.144 4.144 29 C -0.023 4.023 30 C -0.166 4.166 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.213 0.787 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.343 -13.163 -6.136 14.585 hybrid contribution -0.648 0.507 0.615 1.027 sum -1.992 -12.656 -5.521 13.951 Atomic orbital electron populations 1.23112 0.78210 1.04209 1.01601 1.86064 1.21326 1.25704 1.88955 1.19734 0.92325 0.85934 1.01191 1.23132 1.00658 0.87226 1.00665 1.67621 1.12074 1.25446 1.10691 1.23186 0.88596 0.98754 0.93682 1.20768 0.94900 0.93778 1.06779 1.17864 0.86636 0.83518 0.76643 1.90688 1.63112 1.37536 1.50432 1.45671 1.07682 1.08402 1.72345 1.21672 0.79686 0.97637 0.97774 0.88842 1.24287 1.00228 1.00609 0.97618 1.20884 0.90181 0.91482 0.89602 0.91498 1.42084 1.02533 1.35042 1.54180 1.19201 0.93594 1.05479 1.19436 0.90930 1.24710 0.95512 0.99657 1.00404 1.69571 0.98513 1.43183 1.46542 0.86253 0.76661 0.82534 0.80611 1.21248 1.21658 1.21272 1.23583 0.97529 0.96646 0.95444 1.22584 0.97226 1.00491 0.96179 1.22745 0.96936 0.98856 0.98602 1.22508 0.95529 0.99058 0.97301 1.19773 0.90704 0.95772 0.96033 1.20882 0.99425 0.92494 1.03833 0.92439 0.87989 0.92398 0.82342 0.81052 0.75355 0.90326 0.90897 0.78690 0.93106 0.90138 0.90970 0.92204 0.90052 0.90322 0.91338 0.90402 0.91736 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.55 9.57 -19.49 -0.19 -3.74 16 3 C 0.06 0.75 6.68 -39.13 -0.26 0.49 16 4 C 0.04 0.56 10.21 -17.30 -0.18 0.38 16 5 N -0.45 -7.48 10.34 -12.80 -0.13 -7.61 16 6 C 0.12 1.99 10.69 -17.14 -0.18 1.81 16 7 C -0.16 -2.58 5.89 -104.84 -0.62 -3.20 16 8 C 0.57 9.86 7.73 -12.33 -0.10 9.76 16 9 O -0.54 -10.00 13.10 5.32 0.07 -9.93 16 10 N -0.69 -11.78 4.89 -54.31 -0.27 -12.05 16 11 C 0.14 2.26 4.12 -67.48 -0.28 1.98 16 12 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 13 C -0.19 -3.21 7.69 -25.75 -0.20 -3.41 16 14 C 0.19 3.56 4.36 -67.48 -0.29 3.26 16 15 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 16 N -0.70 -15.86 4.74 -52.99 -0.25 -16.11 16 17 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.93 -25.91 13.06 55.49 0.72 -25.18 16 21 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.13 -2.01 0.78 -154.72 -0.12 -2.13 16 26 C -0.13 -1.95 7.27 -26.28 -0.19 -2.14 16 27 C -0.13 -1.79 8.08 -25.75 -0.21 -2.00 16 28 C -0.11 -1.36 7.84 -26.29 -0.21 -1.57 16 29 C -0.01 -0.21 5.97 -103.76 -0.62 -0.83 16 30 C -0.11 -1.52 8.70 36.01 0.31 -1.21 16 31 H 0.06 0.35 7.68 -51.93 -0.40 -0.05 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.16 1.63 6.30 -52.49 -0.33 1.30 16 35 H 0.17 3.09 6.46 -52.49 -0.34 2.75 16 36 H 0.41 7.31 4.24 -40.82 -0.17 7.14 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.38 8.77 5.14 -40.82 -0.21 8.56 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.78 7.44 -51.93 -0.39 0.40 16 49 H 0.10 1.45 5.95 -51.93 -0.31 1.14 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -29.73 391.30 -8.66 -38.39 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -7.10 Total: 18.23 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.39 Total: -4.44 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.08 Total: -60.95 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.12 Total: -13.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.73 -8.66 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078658548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.196 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.92 seconds