Wall clock time and date at job start Wed Apr 1 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35922 * 117.00085 * 2 1 4 4 C 1.38855 * 120.40501 * 0.02562 * 3 2 1 5 5 N 1.31874 * 120.99767 * 179.97438 * 4 3 2 6 6 C 1.31683 * 121.94571 * 359.72703 * 5 4 3 7 7 C 1.39521 * 120.68752 * 0.53888 * 6 5 4 8 8 C 1.47854 * 120.52974 * 179.75553 * 7 6 5 9 9 O 1.21557 * 120.00207 * 173.91691 * 8 7 6 10 10 N 1.34774 * 120.00338 * 353.90919 * 8 7 6 11 11 C 1.46492 * 120.00547 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.94872 * 23.59777 * 11 10 8 13 13 C 1.53956 * 113.66491 * 252.19251 * 11 10 8 14 14 C 1.53952 * 87.29245 * 270.25665 * 13 11 10 15 15 H 1.09003 * 113.66158 * 220.79000 * 14 13 11 16 16 N 1.46505 * 113.74434 * 89.75046 * 14 13 11 17 17 C 1.36941 * 119.99775 * 107.76750 * 16 14 13 18 18 H 1.08001 * 120.00060 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99720 * 180.02562 * 17 16 14 20 20 N 1.31628 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00004 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47340 * 59.99573 * 21 19 17 23 23 H 1.48497 * 109.47165 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47134 * 299.99707 * 21 19 17 25 25 C 1.52904 * 86.78507 * 335.26540 * 14 13 11 26 26 C 1.52910 * 121.13704 * 150.61796 * 25 14 13 27 27 C 1.53946 * 86.78109 * 100.81961 * 26 25 14 28 28 C 1.52902 * 121.13800 * 259.17816 * 25 14 13 29 29 C 1.38842 * 120.40877 * 180.02562 * 3 2 1 30 30 C 1.50699 * 120.87835 * 359.97438 * 29 3 2 31 31 H 1.09007 * 109.47408 * 60.00372 * 1 2 3 32 32 H 1.09005 * 109.47336 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47358 * 300.00165 * 1 2 3 34 34 H 1.07997 * 119.49585 * 359.96057 * 4 3 2 35 35 H 1.08001 * 119.65689 * 180.27090 * 6 5 4 36 36 H 0.97004 * 119.99276 * 0.02562 * 10 8 7 37 37 H 1.08995 * 113.57842 * 155.65559 * 13 11 10 38 38 H 1.08997 * 113.57978 * 24.86148 * 13 11 10 39 39 H 0.97001 * 119.99818 * 287.76955 * 16 14 13 40 40 H 0.96996 * 119.99881 * 180.02562 * 20 19 17 41 41 H 1.09007 * 113.66053 * 346.34525 * 26 25 14 42 42 H 1.09003 * 113.66456 * 215.29103 * 26 25 14 43 43 H 1.09004 * 113.58035 * 139.34159 * 27 26 25 44 44 H 1.09001 * 113.58206 * 270.12916 * 27 26 25 45 45 H 1.09002 * 113.66620 * 144.71028 * 28 25 14 46 46 H 1.09006 * 113.66134 * 13.65540 * 28 25 14 47 47 H 1.09004 * 109.47487 * 263.69157 * 30 29 3 48 48 H 1.08999 * 109.47471 * 23.68942 * 30 29 3 49 49 H 1.09004 * 109.47486 * 143.69025 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6891 0.0064 7 6 4.0198 2.5637 0.0005 8 6 5.4910 2.7104 0.0011 9 8 6.1998 1.7286 0.1075 10 7 6.0464 3.9328 -0.1165 11 6 7.5041 4.0782 -0.1165 12 1 8.0218 3.1695 -0.4235 13 6 8.0630 4.7010 1.1758 14 6 7.8903 6.0744 0.5019 15 1 8.7165 6.7604 0.6888 16 7 6.5790 6.6850 0.7345 17 6 6.4643 7.7621 1.5724 18 1 7.3404 8.1617 2.0613 19 6 5.2218 8.3403 1.7932 20 7 4.1540 7.8535 1.1969 21 14 5.0653 9.8099 2.9355 22 1 5.8949 10.9284 2.4198 23 1 3.6446 10.2372 3.0006 24 1 5.5320 9.4330 4.2939 25 6 7.9955 5.3364 -0.8331 26 6 7.2893 5.8605 -2.0841 27 6 8.6572 6.4188 -2.5166 28 6 9.2980 5.3325 -1.6339 29 6 3.4320 1.2936 -0.0005 30 6 4.2809 0.0485 -0.0005 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2196 2.3226 0.0003 35 1 3.6366 4.6748 0.0111 36 1 5.4808 4.7163 -0.2011 37 1 9.1027 4.4392 1.3718 38 1 7.4189 4.5569 2.0433 39 1 5.7922 6.3263 0.2951 40 1 3.2859 8.2578 1.3509 41 1 6.5475 6.6319 -1.8769 42 1 6.9124 5.0726 -2.7362 43 1 8.8626 6.2941 -3.5798 44 1 8.8451 7.4333 -2.1650 45 1 9.4857 4.3962 -2.1595 46 1 10.1610 5.6821 -1.0672 47 1 4.5793 -0.1879 1.0208 48 1 3.7080 -0.7820 -0.4130 49 1 5.1696 0.2146 -0.6095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078658548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:46 Heat of formation + Delta-G solvation = 10.793819 kcal Electronic energy + Delta-G solvation = -31299.406504 eV Core-core repulsion = 27228.339258 eV Total energy + Delta-G solvation = -4071.067246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 10.98 seconds Orbital eigenvalues (eV) -42.30191 -41.69155 -40.12325 -38.90046 -36.68674 -35.51987 -34.71419 -34.02500 -32.06291 -31.27962 -28.91828 -28.48426 -26.75172 -26.45782 -25.48176 -25.17775 -23.98899 -23.28266 -21.93787 -21.37546 -20.02164 -19.10403 -18.75072 -18.44491 -17.43978 -17.38047 -17.06946 -16.90288 -16.65428 -16.22136 -16.06284 -15.93353 -15.49793 -15.17645 -14.86183 -14.62649 -14.61383 -13.97710 -13.90149 -13.81309 -13.73314 -13.43805 -13.29670 -13.14070 -13.04934 -12.78819 -12.74183 -12.66129 -12.49348 -12.37293 -12.20387 -11.91791 -11.80731 -11.27915 -11.23193 -11.03484 -10.84274 -10.71257 -10.61670 -10.42223 -9.86209 -9.54372 -8.97662 -7.92517 -5.19692 -0.53611 0.07072 1.49561 1.50447 1.56429 1.69814 1.84540 2.27898 2.57434 2.64930 3.22635 3.39776 3.40119 3.44320 3.57636 3.61878 3.73682 3.82829 3.93861 4.00028 4.04629 4.09346 4.21404 4.29445 4.36859 4.40262 4.54958 4.57926 4.63439 4.68666 4.73396 4.76710 4.80567 4.88450 4.93832 4.99377 5.05235 5.14190 5.14988 5.16080 5.22017 5.27936 5.39304 5.54050 5.60285 5.63799 5.69108 6.11410 6.29689 6.42125 6.74324 7.05627 7.37030 8.09453 8.33307 9.29546 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.003911 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.694666 B = 7158.176485 C = 9283.761190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.313 6.313 3 C 0.070 3.930 4 C 0.044 3.956 5 N -0.473 5.473 6 C 0.102 3.898 7 C -0.166 4.166 8 C 0.566 3.434 9 O -0.552 6.552 10 N -0.691 5.691 11 C 0.138 3.862 12 H 0.102 0.898 13 C -0.177 4.177 14 C 0.176 3.824 15 H 0.066 0.934 16 N -0.709 5.709 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.062 4.062 20 N -0.957 5.957 21 Si 0.965 3.035 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.284 1.284 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.127 4.127 28 C -0.091 4.091 29 C -0.028 4.028 30 C -0.101 4.101 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.195 0.805 35 H 0.151 0.849 36 H 0.402 0.598 37 H 0.107 0.893 38 H 0.042 0.958 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -14.775 -7.021 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.022 3.978 4 C -0.114 4.114 5 N -0.182 5.182 6 C -0.057 4.057 7 C -0.171 4.171 8 C 0.353 3.647 9 O -0.433 6.433 10 N -0.341 5.341 11 C 0.033 3.967 12 H 0.120 0.880 13 C -0.219 4.219 14 C 0.065 3.935 15 H 0.084 0.916 16 N -0.348 5.348 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.255 4.255 20 N -0.607 5.607 21 Si 0.795 3.205 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.210 1.210 25 C -0.123 4.123 26 C -0.168 4.168 27 C -0.165 4.165 28 C -0.129 4.129 29 C -0.037 4.037 30 C -0.157 4.157 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.086 0.914 34 H 0.212 0.788 35 H 0.168 0.832 36 H 0.240 0.760 37 H 0.125 0.875 38 H 0.061 0.939 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.945 -14.744 -6.828 16.276 hybrid contribution -0.831 0.881 0.831 1.469 sum -1.776 -13.863 -5.997 15.208 Atomic orbital electron populations 1.23525 0.75621 1.06457 1.02767 1.86078 1.23900 1.24281 1.88267 1.19696 0.91843 0.86862 0.99438 1.23656 1.02228 0.86290 0.99205 1.67588 1.11810 1.27259 1.11538 1.22871 0.89191 0.98151 0.95463 1.20670 0.94213 0.94339 1.07852 1.18044 0.87128 0.83312 0.76226 1.90669 1.63542 1.37776 1.51299 1.45745 1.08062 1.08182 1.72140 1.21744 0.79334 0.98327 0.97330 0.87972 1.24218 1.01324 0.99644 0.96721 1.21099 0.88233 0.91909 0.92252 0.91594 1.42176 1.04074 1.34726 1.53851 1.19533 0.93500 1.05740 1.18915 0.90739 1.25369 0.95539 1.02254 1.02356 1.69720 0.98452 1.44362 1.48158 0.85353 0.76005 0.80130 0.79051 1.20561 1.22455 1.21050 1.23469 0.99797 0.94815 0.94189 1.22584 0.97607 1.00051 0.96548 1.22707 0.95083 0.98452 1.00210 1.22533 0.94195 0.99821 0.96326 1.19995 0.91884 0.95544 0.96274 1.20802 0.98970 0.92477 1.03486 0.91047 0.85362 0.91381 0.78825 0.83195 0.75994 0.87509 0.93921 0.79291 0.93977 0.93482 0.89955 0.89864 0.91101 0.88101 0.89960 0.90671 0.89900 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.82 113.37 1.11 1.22 16 2 O -0.31 -6.41 9.57 -92.67 -0.89 -7.29 16 3 C 0.07 1.80 6.68 22.56 0.15 1.95 16 4 C 0.04 1.15 10.21 84.83 0.87 2.01 16 5 N -0.47 -16.00 10.34 -194.40 -2.01 -18.01 16 6 C 0.10 3.66 10.69 85.02 0.91 4.57 16 7 C -0.17 -5.63 5.89 -20.01 -0.12 -5.74 16 8 C 0.57 20.25 7.73 86.79 0.67 20.92 16 9 O -0.55 -20.69 13.10 -3.90 -0.05 -20.75 16 10 N -0.69 -24.46 4.89 -444.02 -2.17 -26.63 16 11 C 0.14 4.47 4.12 45.29 0.19 4.66 16 12 H 0.10 3.18 7.46 -2.39 -0.02 3.16 16 13 C -0.18 -6.12 7.69 31.23 0.24 -5.88 16 14 C 0.18 6.57 4.36 45.28 0.20 6.77 16 15 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 16 N -0.71 -33.27 4.74 -321.55 -1.52 -34.80 16 17 C -0.25 -13.00 9.97 84.03 0.84 -12.16 16 18 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 20 N -0.96 -55.42 13.06 21.65 0.28 -55.13 16 21 Si 0.96 45.26 29.55 68.60 2.03 47.28 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 C -0.12 -3.64 0.78 -52.32 -0.04 -3.68 16 26 C -0.13 -3.96 7.27 30.88 0.22 -3.74 16 27 C -0.13 -3.15 8.08 31.23 0.25 -2.90 16 28 C -0.09 -2.08 7.84 30.88 0.24 -1.84 16 29 C -0.03 -0.84 5.97 -19.31 -0.12 -0.95 16 30 C -0.10 -2.72 8.70 71.24 0.62 -2.10 16 31 H 0.07 0.62 7.68 -2.38 -0.02 0.60 16 32 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.64 7.67 -2.39 -0.02 0.63 16 34 H 0.20 3.47 6.30 -2.91 -0.02 3.45 16 35 H 0.15 5.95 6.46 -2.91 -0.02 5.93 16 36 H 0.40 15.38 4.24 -92.71 -0.39 14.99 16 37 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.37 18.22 5.14 -92.71 -0.48 17.75 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.05 1.75 7.58 -2.38 -0.02 1.73 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.08 1.88 7.44 -2.39 -0.02 1.86 16 49 H 0.08 2.51 5.95 -2.38 -0.01 2.50 16 Total: -1.00 -66.00 391.30 2.49 -63.51 By element: Atomic # 1 Polarization: 51.53 SS G_CDS: 0.12 Total: 51.65 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.70 Total: 0.18 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.42 Total: -134.57 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.94 Total: -28.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.00 2.49 -63.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078658548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.301 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.98 seconds