Wall clock time and date at job start Wed Apr 1 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33492 * 126.83146 * 2 1 4 4 N 1.20650 * 113.16133 * 180.02562 * 3 2 1 5 5 C 1.30017 * 112.29767 * 359.71856 * 4 3 2 6 6 C 1.50705 * 127.33678 * 180.30397 * 5 4 3 7 7 C 1.53001 * 117.49639 * 8.76024 * 6 5 4 8 8 C 1.52996 * 60.00401 * 252.51456 * 7 6 5 9 9 C 1.37363 * 126.82655 * 180.02562 * 2 1 3 10 10 C 1.47394 * 128.56722 * 359.95191 * 9 2 1 11 11 O 1.21609 * 120.00271 * 90.02699 * 10 9 2 12 12 N 1.34784 * 119.99794 * 270.02951 * 10 9 2 13 13 C 1.46497 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.88611 * 26.84194 * 13 12 10 15 15 C 1.53949 * 113.66490 * 255.49123 * 13 12 10 16 16 C 1.53949 * 87.29670 * 220.70199 * 15 13 12 17 17 H 1.08998 * 113.65772 * 139.29939 * 16 15 13 18 18 N 1.46490 * 113.66186 * 270.26195 * 16 15 13 19 19 C 1.36935 * 120.00121 * 255.49183 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46685 * 269.99637 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99716 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00435 * 23 21 19 27 27 C 1.52909 * 86.78310 * 24.73841 * 16 15 13 28 28 C 1.52906 * 121.13880 * 209.38178 * 27 16 15 29 29 C 1.53948 * 86.78398 * 209.37167 * 28 27 16 30 30 C 1.52906 * 121.14379 * 100.81107 * 27 16 15 31 31 H 1.08992 * 109.47026 * 269.97176 * 1 2 3 32 32 H 1.08995 * 109.47046 * 29.97337 * 1 2 3 33 33 H 1.09005 * 109.47404 * 149.97099 * 1 2 3 34 34 H 1.08994 * 115.54982 * 154.47265 * 6 5 4 35 35 H 1.09005 * 117.49974 * 0.02562 * 7 6 5 36 36 H 1.09004 * 117.49808 * 145.01755 * 7 6 5 37 37 H 1.09000 * 117.49865 * 252.51572 * 8 7 6 38 38 H 1.08992 * 117.49998 * 107.48992 * 8 7 6 39 39 H 0.97002 * 120.00112 * 0.02562 * 12 10 9 40 40 H 1.08997 * 113.57559 * 106.09649 * 15 13 12 41 41 H 1.09002 * 113.64819 * 335.32070 * 15 13 12 42 42 H 0.97000 * 120.00577 * 75.49783 * 18 16 15 43 43 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 44 44 H 1.08995 * 113.66414 * 323.84349 * 28 27 16 45 45 H 1.09002 * 113.66550 * 94.90218 * 28 27 16 46 46 H 1.09008 * 113.58200 * 270.13155 * 29 28 27 47 47 H 1.08994 * 113.58337 * 139.33555 * 29 28 27 48 48 H 1.08997 * 113.66670 * 265.10082 * 30 27 16 49 49 H 1.09002 * 113.65781 * 36.15732 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5021 0.0050 6 6 4.9964 -1.2260 0.0126 7 6 6.2595 -0.3881 0.2209 8 6 5.9477 -0.9719 -1.1585 9 6 2.3304 -1.0995 -0.0005 10 6 1.9587 -2.5258 -0.0002 11 8 1.8051 -3.1145 -1.0532 12 7 1.7889 -3.1777 1.1673 13 6 1.4190 -4.5952 1.1676 14 1 1.7503 -5.1200 0.2716 15 6 -0.0578 -4.8483 1.5215 16 6 0.4240 -6.0473 2.3584 17 1 -0.0964 -6.1536 3.3102 18 7 0.4933 -7.3010 1.6038 19 6 -0.4649 -8.2625 1.7840 20 1 -1.2720 -8.0964 2.4820 21 6 -0.3989 -9.4508 1.0694 22 7 0.5851 -9.6534 0.2190 23 14 -1.7065 -10.7620 1.3147 24 1 -1.2869 -11.6820 2.4023 25 1 -2.9925 -10.1163 1.6810 26 1 -1.8793 -11.5304 0.0557 27 6 1.7655 -5.3217 2.4678 28 6 3.0746 -6.0980 2.6150 29 6 3.6086 -4.8803 3.3909 30 6 2.1445 -4.5462 3.7299 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 4.9809 -2.2285 0.4400 35 1 6.1344 0.6867 0.3529 36 1 7.0753 -0.8393 0.7858 37 1 6.5584 -1.8072 -1.5012 38 1 5.6176 -0.2812 -1.9344 39 1 1.9110 -2.7081 2.0072 40 1 -0.6689 -5.1320 0.6647 41 1 -0.5072 -4.0534 2.1167 42 1 1.2181 -7.4502 0.9766 43 1 1.2638 -8.9723 0.0914 44 1 2.9834 -6.9982 3.2226 45 1 3.5878 -6.2736 1.6695 46 1 4.0900 -4.1359 2.7566 47 1 4.2079 -5.1465 4.2615 48 1 1.9145 -3.4821 3.6752 49 1 1.7919 -5.0104 4.6509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:07 Heat of formation + Delta-G solvation = 106.368432 kcal Electronic energy + Delta-G solvation = -30940.626993 eV Core-core repulsion = 26873.704173 eV Total energy + Delta-G solvation = -4066.922820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.11700 -40.79045 -38.93942 -37.78362 -35.28241 -34.29283 -33.96242 -33.11750 -32.52180 -29.43800 -28.29735 -25.74066 -25.64847 -24.53468 -24.32151 -23.57102 -22.79357 -22.60971 -20.71081 -20.32792 -19.61161 -18.61727 -18.02026 -17.51120 -17.41709 -16.74516 -16.11062 -15.75086 -15.60630 -15.23152 -14.82843 -14.64251 -14.17845 -13.79590 -13.67205 -13.60765 -13.52254 -13.04647 -12.87897 -12.73299 -12.38461 -12.24896 -12.06468 -11.95403 -11.83080 -11.81552 -11.57209 -11.53848 -10.96755 -10.76740 -10.72877 -10.60749 -10.35743 -10.10847 -10.00605 -9.93232 -9.81075 -9.69852 -9.59299 -9.18538 -8.87725 -8.81816 -7.07842 -6.13310 -3.14393 1.05541 1.58720 2.34179 2.59721 3.18891 3.47377 3.50329 3.55033 3.69259 3.69876 3.99588 4.47960 4.52920 4.54284 4.57558 4.60872 4.68626 4.76712 4.78513 4.81282 4.99905 5.03345 5.06439 5.19463 5.25571 5.29740 5.35320 5.40210 5.55165 5.55812 5.61834 5.63024 5.72038 5.74984 5.76962 5.82438 5.87646 5.92717 5.96539 6.09034 6.22444 6.32332 6.47724 6.55709 6.59903 6.68325 6.93027 7.47224 7.79397 7.96562 8.13553 8.72039 9.17948 10.04268 10.18248 11.34456 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.002781 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.340017 B =10065.319243 C =10617.333715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.017 3.983 3 O 0.096 5.904 4 N -0.355 5.355 5 C 0.088 3.912 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.157 4.157 9 C -0.243 4.243 10 C 0.595 3.405 11 O -0.520 6.520 12 N -0.703 5.703 13 C 0.152 3.848 14 H 0.114 0.886 15 C -0.182 4.182 16 C 0.192 3.808 17 H 0.068 0.932 18 N -0.712 5.712 19 C -0.335 4.335 20 H 0.066 0.934 21 C -0.042 4.042 22 N -0.940 5.940 23 Si 1.083 2.917 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.288 1.288 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.109 4.109 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.398 0.602 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.369 0.631 43 H 0.256 0.744 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 21.671 4.779 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 O 0.034 5.966 4 N -0.061 5.061 5 C -0.073 4.073 6 C -0.111 4.111 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.250 4.250 10 C 0.379 3.621 11 O -0.395 6.395 12 N -0.354 5.354 13 C 0.049 3.951 14 H 0.131 0.869 15 C -0.225 4.225 16 C 0.079 3.921 17 H 0.086 0.914 18 N -0.351 5.351 19 C -0.466 4.466 20 H 0.084 0.916 21 C -0.240 4.240 22 N -0.585 5.585 23 Si 0.913 3.087 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.214 1.214 27 C -0.129 4.129 28 C -0.153 4.153 29 C -0.178 4.178 30 C -0.147 4.147 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.234 0.766 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.424 20.754 3.669 22.033 hybrid contribution 0.441 1.092 0.625 1.333 sum 6.866 21.846 4.294 23.298 Atomic orbital electron populations 1.20497 0.83007 1.05482 1.04751 1.24630 0.96029 0.85040 0.98932 1.84530 1.11059 1.32909 1.68060 1.73536 0.95891 1.16332 1.20363 1.23717 0.94252 0.88568 1.00790 1.20257 0.84803 0.99623 1.06432 1.23039 0.96992 1.00133 0.99630 1.23051 1.01088 1.03636 0.91685 1.21938 0.92592 0.95448 1.15071 1.16899 0.76968 0.83795 0.84456 1.90866 1.49987 1.67417 1.31278 1.46089 1.69624 1.12023 1.07636 1.22343 0.96332 0.78562 0.97874 0.86868 1.24308 0.95143 1.00780 1.02224 1.20696 0.91754 0.85342 0.94312 0.91396 1.42091 1.30632 1.14147 1.48272 1.20069 1.05185 0.97726 1.23622 0.91558 1.25783 1.02844 0.98664 0.96699 1.70851 1.13941 1.36701 1.37010 0.83199 0.74169 0.75364 0.75924 1.22304 1.22117 1.21375 1.23484 0.97349 0.97737 0.94376 1.22569 0.95339 0.96980 1.00444 1.22863 0.95974 0.98857 1.00106 1.22516 0.96205 0.98832 0.97156 0.88598 0.89046 0.88485 0.85399 0.87966 0.87708 0.87501 0.88436 0.76637 0.90817 0.91074 0.79689 0.93272 0.89376 0.91825 0.90895 0.91767 0.92290 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.33 36.01 0.37 -0.20 16 2 C 0.02 0.18 7.55 -34.63 -0.26 -0.08 16 3 O 0.10 1.08 11.06 18.66 0.21 1.29 16 4 N -0.36 -4.39 11.71 34.78 0.41 -3.98 16 5 C 0.09 1.09 7.08 -79.76 -0.56 0.52 16 6 C -0.09 -0.98 6.32 -91.76 -0.58 -1.56 16 7 C -0.16 -1.38 10.16 -26.73 -0.27 -1.65 16 8 C -0.16 -1.46 10.23 -26.73 -0.27 -1.73 16 9 C -0.24 -3.07 6.24 -102.89 -0.64 -3.71 16 10 C 0.60 8.75 7.60 -12.53 -0.10 8.66 16 11 O -0.52 -9.96 16.75 5.27 0.09 -9.87 16 12 N -0.70 -9.08 5.31 -54.45 -0.29 -9.37 16 13 C 0.15 2.40 4.00 -67.48 -0.27 2.13 16 14 H 0.11 2.17 7.54 -51.93 -0.39 1.78 16 15 C -0.18 -3.08 7.68 -25.75 -0.20 -3.28 16 16 C 0.19 3.62 4.35 -67.49 -0.29 3.33 16 17 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 18 N -0.71 -17.10 5.12 -53.00 -0.27 -17.38 16 19 C -0.34 -9.15 9.98 -15.06 -0.15 -9.30 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 22 N -0.94 -28.76 13.70 55.49 0.76 -28.00 16 23 Si 1.08 25.65 29.92 -169.99 -5.09 20.56 16 24 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 C -0.13 -1.90 0.91 -154.71 -0.14 -2.04 16 28 C -0.12 -1.74 7.43 -26.29 -0.20 -1.93 16 29 C -0.14 -1.63 8.08 -25.75 -0.21 -1.84 16 30 C -0.11 -1.28 7.45 -26.28 -0.20 -1.47 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.10 0.92 7.97 -51.93 -0.41 0.51 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 4.21 6.66 -40.82 -0.27 3.94 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.37 9.30 6.57 -40.82 -0.27 9.03 16 43 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 49 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -33.20 407.62 -9.61 -42.81 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -7.50 Total: 13.24 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -4.06 Total: -15.45 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.61 Total: -58.72 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.29 Total: -8.58 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.20 -9.61 -42.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.178 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds