Wall clock time and date at job start Wed Apr 1 2020 06:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33492 * 126.83146 * 2 1 4 4 N 1.20650 * 113.16133 * 180.02562 * 3 2 1 5 5 C 1.30017 * 112.29767 * 359.71856 * 4 3 2 6 6 C 1.50705 * 127.33678 * 180.30397 * 5 4 3 7 7 C 1.53001 * 117.49639 * 8.76024 * 6 5 4 8 8 C 1.52996 * 60.00401 * 252.51456 * 7 6 5 9 9 C 1.37363 * 126.82655 * 180.02562 * 2 1 3 10 10 C 1.47394 * 128.56722 * 359.95191 * 9 2 1 11 11 O 1.21609 * 120.00271 * 90.02699 * 10 9 2 12 12 N 1.34784 * 119.99794 * 270.02951 * 10 9 2 13 13 C 1.46497 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.88611 * 26.84194 * 13 12 10 15 15 C 1.53949 * 113.66490 * 255.49123 * 13 12 10 16 16 C 1.53949 * 87.29670 * 220.70199 * 15 13 12 17 17 H 1.08998 * 113.65772 * 139.29939 * 16 15 13 18 18 N 1.46490 * 113.66186 * 270.26195 * 16 15 13 19 19 C 1.36935 * 120.00121 * 255.49183 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46685 * 269.99637 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99716 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00435 * 23 21 19 27 27 C 1.52909 * 86.78310 * 24.73841 * 16 15 13 28 28 C 1.52906 * 121.13880 * 209.38178 * 27 16 15 29 29 C 1.53948 * 86.78398 * 209.37167 * 28 27 16 30 30 C 1.52906 * 121.14379 * 100.81107 * 27 16 15 31 31 H 1.08992 * 109.47026 * 269.97176 * 1 2 3 32 32 H 1.08995 * 109.47046 * 29.97337 * 1 2 3 33 33 H 1.09005 * 109.47404 * 149.97099 * 1 2 3 34 34 H 1.08994 * 115.54982 * 154.47265 * 6 5 4 35 35 H 1.09005 * 117.49974 * 0.02562 * 7 6 5 36 36 H 1.09004 * 117.49808 * 145.01755 * 7 6 5 37 37 H 1.09000 * 117.49865 * 252.51572 * 8 7 6 38 38 H 1.08992 * 117.49998 * 107.48992 * 8 7 6 39 39 H 0.97002 * 120.00112 * 0.02562 * 12 10 9 40 40 H 1.08997 * 113.57559 * 106.09649 * 15 13 12 41 41 H 1.09002 * 113.64819 * 335.32070 * 15 13 12 42 42 H 0.97000 * 120.00577 * 75.49783 * 18 16 15 43 43 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 44 44 H 1.08995 * 113.66414 * 323.84349 * 28 27 16 45 45 H 1.09002 * 113.66550 * 94.90218 * 28 27 16 46 46 H 1.09008 * 113.58200 * 270.13155 * 29 28 27 47 47 H 1.08994 * 113.58337 * 139.33555 * 29 28 27 48 48 H 1.08997 * 113.66670 * 265.10082 * 30 27 16 49 49 H 1.09002 * 113.65781 * 36.15732 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5021 0.0050 6 6 4.9964 -1.2260 0.0126 7 6 6.2595 -0.3881 0.2209 8 6 5.9477 -0.9719 -1.1585 9 6 2.3304 -1.0995 -0.0005 10 6 1.9587 -2.5258 -0.0002 11 8 1.8051 -3.1145 -1.0532 12 7 1.7889 -3.1777 1.1673 13 6 1.4190 -4.5952 1.1676 14 1 1.7503 -5.1200 0.2716 15 6 -0.0578 -4.8483 1.5215 16 6 0.4240 -6.0473 2.3584 17 1 -0.0964 -6.1536 3.3102 18 7 0.4933 -7.3010 1.6038 19 6 -0.4649 -8.2625 1.7840 20 1 -1.2720 -8.0964 2.4820 21 6 -0.3989 -9.4508 1.0694 22 7 0.5851 -9.6534 0.2190 23 14 -1.7065 -10.7620 1.3147 24 1 -1.2869 -11.6820 2.4023 25 1 -2.9925 -10.1163 1.6810 26 1 -1.8793 -11.5304 0.0557 27 6 1.7655 -5.3217 2.4678 28 6 3.0746 -6.0980 2.6150 29 6 3.6086 -4.8803 3.3909 30 6 2.1445 -4.5462 3.7299 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 4.9809 -2.2285 0.4400 35 1 6.1344 0.6867 0.3529 36 1 7.0753 -0.8393 0.7858 37 1 6.5584 -1.8072 -1.5012 38 1 5.6176 -0.2812 -1.9344 39 1 1.9110 -2.7081 2.0072 40 1 -0.6689 -5.1320 0.6647 41 1 -0.5072 -4.0534 2.1167 42 1 1.2181 -7.4502 0.9766 43 1 1.2638 -8.9723 0.0914 44 1 2.9834 -6.9982 3.2226 45 1 3.5878 -6.2736 1.6695 46 1 4.0900 -4.1359 2.7566 47 1 4.2079 -5.1465 4.2615 48 1 1.9145 -3.4821 3.6752 49 1 1.7919 -5.0104 4.6509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078683279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:06 Heat of formation + Delta-G solvation = 86.168116 kcal Electronic energy + Delta-G solvation = -30941.502944 eV Core-core repulsion = 26873.704173 eV Total energy + Delta-G solvation = -4067.798772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.01542 -42.08537 -40.18703 -38.54802 -36.80379 -35.75323 -34.96467 -34.11332 -33.91144 -31.28875 -29.08364 -26.87223 -26.84839 -25.86624 -25.43981 -25.08971 -24.05658 -23.40331 -21.85542 -21.62965 -20.51541 -19.71844 -19.44277 -18.93793 -18.58164 -17.75370 -17.43692 -17.09872 -16.58835 -16.27087 -15.92945 -15.86797 -15.66845 -15.42215 -15.16313 -14.59686 -14.34709 -14.13906 -14.08008 -13.74471 -13.46139 -13.26333 -13.23022 -13.11216 -12.90583 -12.72072 -12.67427 -12.58139 -12.54058 -12.35809 -12.02505 -11.88387 -11.59783 -11.50921 -11.44189 -11.40110 -11.13947 -10.97015 -10.69689 -10.66134 -10.47358 -10.10686 -9.09578 -8.38597 -5.32745 0.19849 0.67786 1.18789 1.58130 1.67756 1.69046 1.82730 2.14442 2.70407 2.72026 2.84789 3.16463 3.28551 3.36409 3.39104 3.62417 3.66578 3.74478 3.80328 3.83227 3.92505 3.93280 3.96395 4.04812 4.12188 4.30550 4.45460 4.53023 4.55645 4.60105 4.61968 4.63050 4.66358 4.77654 4.85172 4.86726 4.92307 4.96627 4.99509 5.03102 5.04904 5.09857 5.12844 5.17635 5.25334 5.46803 5.59936 5.64581 6.35101 6.48318 7.00688 7.08999 7.09514 7.99222 8.11460 9.12530 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.002781 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.340017 B =10065.319243 C =10617.333715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.039 3.961 3 O 0.098 5.902 4 N -0.368 5.368 5 C 0.086 3.914 6 C -0.114 4.114 7 C -0.140 4.140 8 C -0.161 4.161 9 C -0.273 4.273 10 C 0.604 3.396 11 O -0.573 6.573 12 N -0.682 5.682 13 C 0.163 3.837 14 H 0.072 0.928 15 C -0.169 4.169 16 C 0.171 3.829 17 H 0.070 0.930 18 N -0.728 5.728 19 C -0.328 4.328 20 H 0.071 0.929 21 C -0.106 4.106 22 N -0.976 5.976 23 Si 1.130 2.870 24 H -0.283 1.283 25 H -0.272 1.272 26 H -0.297 1.297 27 C -0.115 4.115 28 C -0.129 4.129 29 C -0.123 4.123 30 C -0.095 4.095 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.415 0.585 40 H 0.038 0.962 41 H 0.107 0.893 42 H 0.358 0.642 43 H 0.242 0.758 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 24.212 7.294 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 O 0.037 5.963 4 N -0.075 5.075 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.178 4.178 8 C -0.199 4.199 9 C -0.281 4.281 10 C 0.390 3.610 11 O -0.452 6.452 12 N -0.333 5.333 13 C 0.058 3.942 14 H 0.090 0.910 15 C -0.211 4.211 16 C 0.060 3.940 17 H 0.088 0.912 18 N -0.366 5.366 19 C -0.459 4.459 20 H 0.089 0.911 21 C -0.297 4.297 22 N -0.624 5.624 23 Si 0.955 3.045 24 H -0.210 1.210 25 H -0.197 1.197 26 H -0.224 1.224 27 C -0.117 4.117 28 C -0.167 4.167 29 C -0.160 4.160 30 C -0.132 4.132 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.126 0.874 42 H 0.190 0.810 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.168 23.385 6.264 24.983 hybrid contribution 0.497 0.391 -0.160 0.652 sum 6.665 23.776 6.104 25.436 Atomic orbital electron populations 1.20729 0.80491 1.06051 1.06619 1.25174 0.97156 0.84065 0.96047 1.84522 1.10905 1.32937 1.67889 1.73525 0.96408 1.16282 1.21284 1.23974 0.94727 0.88620 1.00251 1.20395 0.85006 1.00038 1.07840 1.23094 0.96153 0.99723 0.98779 1.23117 1.00900 1.04039 0.91804 1.21714 0.93578 0.94504 1.18262 1.17099 0.75676 0.84465 0.83800 1.90847 1.52323 1.68808 1.33182 1.45799 1.68688 1.10657 1.08153 1.21839 0.95631 0.79892 0.96828 0.90988 1.24173 0.95381 1.00704 1.00867 1.20998 0.94897 0.84133 0.93922 0.91165 1.42244 1.29813 1.15658 1.48929 1.20428 1.05225 0.98043 1.22188 0.91106 1.27187 1.04263 1.01437 0.96797 1.70967 1.15217 1.36804 1.39438 0.82597 0.72924 0.73356 0.75659 1.21014 1.19666 1.22402 1.23368 0.95082 0.97526 0.95733 1.22599 0.96015 0.98011 1.00071 1.22794 0.96403 0.96655 1.00135 1.22548 0.95494 1.00065 0.95115 0.85872 0.86596 0.89732 0.85417 0.88342 0.85524 0.86340 0.89354 0.74603 0.94270 0.87433 0.80974 0.94780 0.91193 0.93698 0.89740 0.89895 0.89288 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.33 71.24 0.74 -0.20 16 2 C 0.04 0.75 7.55 25.48 0.19 0.94 16 3 O 0.10 2.01 11.06 77.01 0.85 2.86 16 4 N -0.37 -8.57 11.71 -44.79 -0.52 -9.10 16 5 C 0.09 2.02 7.08 45.16 0.32 2.34 16 6 C -0.11 -2.30 6.32 -11.54 -0.07 -2.37 16 7 C -0.14 -2.14 10.16 30.59 0.31 -1.83 16 8 C -0.16 -2.86 10.23 30.60 0.31 -2.55 16 9 C -0.27 -6.61 6.24 -18.74 -0.12 -6.73 16 10 C 0.60 17.65 7.60 86.65 0.66 18.31 16 11 O -0.57 -22.80 16.75 -4.06 -0.07 -22.87 16 12 N -0.68 -16.73 5.31 -444.43 -2.36 -19.09 16 13 C 0.16 5.17 4.00 45.28 0.18 5.35 16 14 H 0.07 2.95 7.54 -2.39 -0.02 2.94 16 15 C -0.17 -5.68 7.68 31.23 0.24 -5.44 16 16 C 0.17 6.46 4.35 45.28 0.20 6.66 16 17 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 18 N -0.73 -36.29 5.12 -321.59 -1.65 -37.93 16 19 C -0.33 -18.24 9.98 84.03 0.84 -17.40 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.11 -6.18 5.50 84.86 0.47 -5.71 16 22 N -0.98 -62.17 13.70 21.65 0.30 -61.87 16 23 Si 1.13 52.29 29.92 68.60 2.05 54.34 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 27 C -0.11 -3.34 0.91 -52.31 -0.05 -3.39 16 28 C -0.13 -3.89 7.43 30.88 0.23 -3.66 16 29 C -0.12 -2.50 8.08 31.23 0.25 -2.25 16 30 C -0.09 -1.87 7.45 30.88 0.23 -1.64 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.26 8.11 -2.38 -0.02 1.24 16 34 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.10 1.60 7.97 -2.38 -0.02 1.58 16 36 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.42 7.43 6.66 -92.71 -0.62 6.82 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.36 19.23 6.57 -92.71 -0.61 18.62 16 43 H 0.24 15.51 6.77 -92.71 -0.63 14.88 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.09 1.28 6.43 -2.39 -0.02 1.26 16 49 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -76.93 407.62 3.43 -73.49 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.10 Total: 39.72 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.93 Total: -19.56 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -4.23 Total: -127.99 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.78 Total: -20.00 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 2.05 Total: 54.34 kcal Total: -76.93 3.43 -73.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.662 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds