Wall clock time and date at job start Wed Apr 1 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33493 * 126.83093 * 2 1 4 4 N 1.20658 * 113.15789 * 180.02562 * 3 2 1 5 5 C 1.30016 * 112.30302 * 359.73394 * 4 3 2 6 6 C 1.50701 * 127.33723 * 180.27543 * 5 4 3 7 7 C 1.52996 * 117.49659 * 8.76958 * 6 5 4 8 8 C 1.52996 * 117.49542 * 300.14640 * 6 5 4 9 9 C 1.37356 * 126.82656 * 180.02562 * 2 1 3 10 10 C 1.47396 * 128.57017 * 359.95822 * 9 2 1 11 11 O 1.21618 * 120.00000 * 90.02641 * 10 9 2 12 12 N 1.34772 * 120.00329 * 270.03067 * 10 9 2 13 13 C 1.46501 * 120.00384 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.88270 * 333.15296 * 13 12 10 15 15 C 1.53943 * 113.66632 * 104.50100 * 13 12 10 16 16 C 1.53957 * 87.29592 * 89.73640 * 15 13 12 17 17 H 1.08999 * 113.65708 * 139.29842 * 16 15 13 18 18 N 1.46499 * 113.66469 * 270.26501 * 16 15 13 19 19 C 1.36939 * 119.99933 * 255.76878 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.52909 * 86.77904 * 24.73790 * 16 15 13 28 28 C 1.52905 * 121.13976 * 209.38147 * 27 16 15 29 29 C 1.53951 * 86.78325 * 209.37453 * 28 27 16 30 30 C 1.52905 * 121.13949 * 100.81402 * 27 16 15 31 31 H 1.08999 * 109.47023 * 269.99268 * 1 2 3 32 32 H 1.08996 * 109.47143 * 29.99842 * 1 2 3 33 33 H 1.09000 * 109.47099 * 149.99854 * 1 2 3 34 34 H 1.08992 * 115.54950 * 154.47762 * 6 5 4 35 35 H 1.09001 * 117.49850 * 0.02562 * 7 6 5 36 36 H 1.09001 * 117.49765 * 145.02422 * 7 6 5 37 37 H 1.09004 * 117.49617 * 214.97646 * 8 6 5 38 38 H 1.08998 * 117.50313 * 359.97438 * 8 6 5 39 39 H 0.97005 * 119.99959 * 359.97438 * 12 10 9 40 40 H 1.09007 * 113.58319 * 335.13635 * 15 13 12 41 41 H 1.09001 * 113.65455 * 204.35077 * 15 13 12 42 42 H 0.97001 * 119.99790 * 75.48851 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.66191 * 323.84405 * 28 27 16 45 45 H 1.08999 * 113.66553 * 94.89899 * 28 27 16 46 46 H 1.09001 * 113.58062 * 270.12702 * 29 28 27 47 47 H 1.09006 * 113.65276 * 139.34895 * 29 28 27 48 48 H 1.09000 * 113.66438 * 265.09198 * 30 27 16 49 49 H 1.08995 * 113.66448 * 36.15502 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6747 -0.5022 0.0047 6 6 4.9965 -1.2260 0.0116 7 6 6.2596 -0.3881 0.2197 8 6 5.9472 -0.9716 -1.1598 9 6 2.3303 -1.0995 -0.0005 10 6 1.9587 -2.5258 -0.0003 11 8 1.8052 -3.1144 -1.0534 12 7 1.7888 -3.1778 1.1669 13 6 1.4189 -4.5954 1.1671 14 1 0.8728 -4.8910 0.2713 15 6 2.5838 -5.5379 1.5199 16 6 2.1610 -5.3905 2.9929 17 1 2.2083 -6.3221 3.5569 18 7 2.8112 -4.2734 3.6824 19 6 3.8302 -4.5135 4.5653 20 1 4.1514 -5.5267 4.7565 21 6 4.4502 -3.4546 5.2142 22 7 4.0584 -2.2198 4.9813 23 14 5.8396 -3.7821 6.4190 24 1 7.1357 -3.7725 5.6944 25 1 5.8484 -2.7265 7.4633 26 1 5.6391 -5.1080 7.0572 27 6 0.7635 -5.0584 2.4688 28 6 -0.1768 -4.1405 3.2506 29 6 -1.3354 -4.9356 2.6218 30 6 -0.3492 -6.1072 2.4641 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.9811 -2.2286 0.4388 35 1 6.1345 0.6866 0.3521 36 1 7.0756 -0.8395 0.7840 37 1 6.5578 -1.8068 -1.5029 38 1 5.6166 -0.2811 -1.9356 39 1 1.9115 -2.7085 2.0070 40 1 3.5660 -5.1172 1.3041 41 1 2.4619 -6.5486 1.1304 42 1 2.5227 -3.3634 3.5105 43 1 4.4915 -1.4799 5.4350 44 1 -0.1026 -4.2567 4.3319 45 1 -0.1370 -3.0990 2.9314 46 1 -1.6811 -4.5258 1.6728 47 1 -2.1509 -5.1423 3.3150 48 1 -0.4472 -6.6369 1.5165 49 1 -0.3235 -6.7761 3.3243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:12 Heat of formation + Delta-G solvation = 108.562861 kcal Electronic energy + Delta-G solvation = -31853.398179 eV Core-core repulsion = 27786.570516 eV Total energy + Delta-G solvation = -4066.827663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -44.72384 -40.68705 -38.69718 -37.34787 -35.32699 -33.79299 -33.57746 -32.73749 -32.16432 -29.85412 -28.03444 -25.62871 -25.36880 -24.43793 -24.14636 -23.62752 -22.47924 -22.25394 -20.44146 -20.11227 -19.26557 -18.46382 -17.66910 -17.31117 -17.18344 -16.42417 -15.74030 -15.39852 -15.30622 -14.87563 -14.73165 -14.35440 -14.28831 -13.89297 -13.35588 -13.30200 -13.22990 -13.02569 -12.69405 -12.51916 -12.16096 -12.01149 -11.89205 -11.60316 -11.52662 -11.46076 -11.41513 -11.14221 -10.98597 -10.92072 -10.73105 -10.32371 -10.25544 -10.16460 -10.01356 -9.83361 -9.68953 -9.43944 -9.37233 -9.24381 -8.90851 -8.61835 -7.07630 -5.88462 -3.17319 1.42013 2.01090 2.59627 2.95014 3.36949 3.41825 3.44169 3.45255 3.93445 4.08137 4.37789 4.47151 4.68861 4.83822 4.85571 4.92044 4.98013 5.00544 5.09331 5.11420 5.16336 5.27811 5.29836 5.35719 5.40401 5.52242 5.58178 5.67013 5.80557 5.81181 5.83575 5.84979 5.91821 5.96178 6.04026 6.04897 6.08069 6.16527 6.19904 6.23203 6.27316 6.35893 6.56821 6.64450 6.68429 6.88356 7.02627 7.63176 7.77450 8.29508 8.36773 8.39823 9.41067 9.95704 10.29352 11.33581 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.005405 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.471992 B = 5178.710245 C = 7468.177005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.100 3.900 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.161 4.161 9 C -0.239 4.239 10 C 0.604 3.396 11 O -0.537 6.537 12 N -0.684 5.684 13 C 0.151 3.849 14 H 0.092 0.908 15 C -0.186 4.186 16 C 0.180 3.820 17 H 0.065 0.935 18 N -0.699 5.699 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.130 4.130 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.103 4.103 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.410 0.590 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.379 0.621 43 H 0.256 0.744 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 0.843 -9.437 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 O 0.034 5.966 4 N -0.062 5.062 5 C -0.062 4.062 6 C -0.106 4.106 7 C -0.194 4.194 8 C -0.199 4.199 9 C -0.246 4.246 10 C 0.388 3.612 11 O -0.414 6.414 12 N -0.335 5.335 13 C 0.046 3.954 14 H 0.110 0.890 15 C -0.228 4.228 16 C 0.067 3.933 17 H 0.083 0.917 18 N -0.339 5.339 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.133 4.133 28 C -0.154 4.154 29 C -0.179 4.179 30 C -0.142 4.142 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.249 0.751 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.214 0.786 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.329 1.465 -10.010 12.492 hybrid contribution 0.605 -0.311 1.066 1.265 sum -6.724 1.154 -8.944 11.249 Atomic orbital electron populations 1.20438 0.83357 1.04938 1.04693 1.24509 0.95884 0.85234 0.99609 1.84511 1.11117 1.32805 1.68148 1.73508 0.95684 1.16429 1.20591 1.23669 0.94262 0.88387 0.99881 1.20253 0.84804 1.00139 1.05376 1.22990 0.97471 1.00067 0.98869 1.23025 1.01642 1.03535 0.91690 1.21797 0.92787 0.95165 1.14820 1.16805 0.76539 0.83843 0.84016 1.90780 1.51336 1.67925 1.31390 1.45723 1.68365 1.10903 1.08537 1.21469 0.96818 0.80188 0.96970 0.89005 1.24301 0.98612 0.98193 1.01693 1.21046 0.89009 0.92552 0.90651 0.91732 1.42082 1.39898 1.03158 1.48757 1.19237 1.08996 0.92994 1.16139 0.90959 1.24713 0.99973 0.95235 1.00518 1.69624 1.44162 0.97642 1.46304 0.86203 0.82237 0.77068 0.80737 1.21728 1.21789 1.20735 1.23397 0.95470 0.98210 0.96189 1.22518 0.94649 0.97926 1.00267 1.22862 0.96714 0.97601 1.00674 1.22483 0.94161 0.95615 1.01892 0.88628 0.89271 0.88904 0.85094 0.88096 0.87702 0.87841 0.88741 0.75130 0.90966 0.90386 0.78586 0.93390 0.89377 0.92077 0.90763 0.91880 0.91586 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.33 36.01 0.37 -0.36 16 2 C 0.01 0.16 7.55 -34.63 -0.26 -0.10 16 3 O 0.10 1.46 11.06 18.65 0.21 1.67 16 4 N -0.36 -6.06 11.71 34.78 0.41 -5.66 16 5 C 0.10 1.74 7.08 -79.76 -0.56 1.17 16 6 C -0.09 -1.43 6.31 -91.78 -0.58 -2.01 16 7 C -0.16 -2.27 10.16 -26.73 -0.27 -2.54 16 8 C -0.16 -2.17 10.23 -26.73 -0.27 -2.44 16 9 C -0.24 -4.00 6.24 -102.89 -0.64 -4.65 16 10 C 0.60 10.64 7.60 -12.53 -0.10 10.55 16 11 O -0.54 -10.66 16.75 5.26 0.09 -10.57 16 12 N -0.68 -11.61 4.71 -54.45 -0.26 -11.87 16 13 C 0.15 2.42 4.08 -67.48 -0.28 2.15 16 14 H 0.09 1.47 7.54 -51.93 -0.39 1.08 16 15 C -0.19 -3.19 7.68 -25.75 -0.20 -3.39 16 16 C 0.18 3.32 4.35 -67.48 -0.29 3.02 16 17 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 18 N -0.70 -15.89 4.97 -52.99 -0.26 -16.15 16 19 C -0.24 -6.30 9.98 -15.06 -0.15 -6.45 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 23 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C -0.13 -1.96 0.76 -154.71 -0.12 -2.08 16 28 C -0.12 -1.69 7.18 -26.28 -0.19 -1.88 16 29 C -0.14 -1.67 8.08 -25.75 -0.21 -1.88 16 30 C -0.10 -1.27 7.84 -26.28 -0.21 -1.48 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.13 2.31 8.14 -51.93 -0.42 1.89 16 35 H 0.10 1.48 7.97 -51.93 -0.41 1.06 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.41 7.51 5.90 -40.82 -0.24 7.27 16 40 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.38 8.94 5.39 -40.82 -0.22 8.72 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.06 0.90 7.50 -51.93 -0.39 0.51 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -30.32 406.62 -9.58 -39.90 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -7.54 Total: 18.16 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -4.05 Total: -12.67 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.61 Total: -59.19 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.29 Total: -8.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.32 -9.58 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.459 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds