Wall clock time and date at job start Wed Apr 1 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33493 * 126.83093 * 2 1 4 4 N 1.20658 * 113.15789 * 180.02562 * 3 2 1 5 5 C 1.30016 * 112.30302 * 359.73394 * 4 3 2 6 6 C 1.50701 * 127.33723 * 180.27543 * 5 4 3 7 7 C 1.52996 * 117.49659 * 8.76958 * 6 5 4 8 8 C 1.52996 * 117.49542 * 300.14640 * 6 5 4 9 9 C 1.37356 * 126.82656 * 180.02562 * 2 1 3 10 10 C 1.47396 * 128.57017 * 359.95822 * 9 2 1 11 11 O 1.21618 * 120.00000 * 90.02641 * 10 9 2 12 12 N 1.34772 * 120.00329 * 270.03067 * 10 9 2 13 13 C 1.46501 * 120.00384 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.88270 * 333.15296 * 13 12 10 15 15 C 1.53943 * 113.66632 * 104.50100 * 13 12 10 16 16 C 1.53957 * 87.29592 * 89.73640 * 15 13 12 17 17 H 1.08999 * 113.65708 * 139.29842 * 16 15 13 18 18 N 1.46499 * 113.66469 * 270.26501 * 16 15 13 19 19 C 1.36939 * 119.99933 * 255.76878 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.52909 * 86.77904 * 24.73790 * 16 15 13 28 28 C 1.52905 * 121.13976 * 209.38147 * 27 16 15 29 29 C 1.53951 * 86.78325 * 209.37453 * 28 27 16 30 30 C 1.52905 * 121.13949 * 100.81402 * 27 16 15 31 31 H 1.08999 * 109.47023 * 269.99268 * 1 2 3 32 32 H 1.08996 * 109.47143 * 29.99842 * 1 2 3 33 33 H 1.09000 * 109.47099 * 149.99854 * 1 2 3 34 34 H 1.08992 * 115.54950 * 154.47762 * 6 5 4 35 35 H 1.09001 * 117.49850 * 0.02562 * 7 6 5 36 36 H 1.09001 * 117.49765 * 145.02422 * 7 6 5 37 37 H 1.09004 * 117.49617 * 214.97646 * 8 6 5 38 38 H 1.08998 * 117.50313 * 359.97438 * 8 6 5 39 39 H 0.97005 * 119.99959 * 359.97438 * 12 10 9 40 40 H 1.09007 * 113.58319 * 335.13635 * 15 13 12 41 41 H 1.09001 * 113.65455 * 204.35077 * 15 13 12 42 42 H 0.97001 * 119.99790 * 75.48851 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.66191 * 323.84405 * 28 27 16 45 45 H 1.08999 * 113.66553 * 94.89899 * 28 27 16 46 46 H 1.09001 * 113.58062 * 270.12702 * 29 28 27 47 47 H 1.09006 * 113.65276 * 139.34895 * 29 28 27 48 48 H 1.09000 * 113.66438 * 265.09198 * 30 27 16 49 49 H 1.08995 * 113.66448 * 36.15502 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6747 -0.5022 0.0047 6 6 4.9965 -1.2260 0.0116 7 6 6.2596 -0.3881 0.2197 8 6 5.9472 -0.9716 -1.1598 9 6 2.3303 -1.0995 -0.0005 10 6 1.9587 -2.5258 -0.0003 11 8 1.8052 -3.1144 -1.0534 12 7 1.7888 -3.1778 1.1669 13 6 1.4189 -4.5954 1.1671 14 1 0.8728 -4.8910 0.2713 15 6 2.5838 -5.5379 1.5199 16 6 2.1610 -5.3905 2.9929 17 1 2.2083 -6.3221 3.5569 18 7 2.8112 -4.2734 3.6824 19 6 3.8302 -4.5135 4.5653 20 1 4.1514 -5.5267 4.7565 21 6 4.4502 -3.4546 5.2142 22 7 4.0584 -2.2198 4.9813 23 14 5.8396 -3.7821 6.4190 24 1 7.1357 -3.7725 5.6944 25 1 5.8484 -2.7265 7.4633 26 1 5.6391 -5.1080 7.0572 27 6 0.7635 -5.0584 2.4688 28 6 -0.1768 -4.1405 3.2506 29 6 -1.3354 -4.9356 2.6218 30 6 -0.3492 -6.1072 2.4641 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.9811 -2.2286 0.4388 35 1 6.1345 0.6866 0.3521 36 1 7.0756 -0.8395 0.7840 37 1 6.5578 -1.8068 -1.5029 38 1 5.6166 -0.2811 -1.9356 39 1 1.9115 -2.7085 2.0070 40 1 3.5660 -5.1172 1.3041 41 1 2.4619 -6.5486 1.1304 42 1 2.5227 -3.3634 3.5105 43 1 4.4915 -1.4799 5.4350 44 1 -0.1026 -4.2567 4.3319 45 1 -0.1370 -3.0990 2.9314 46 1 -1.6811 -4.5258 1.6728 47 1 -2.1509 -5.1423 3.3150 48 1 -0.4472 -6.6369 1.5165 49 1 -0.3235 -6.7761 3.3243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078683280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:10 Heat of formation + Delta-G solvation = 92.103695 kcal Electronic energy + Delta-G solvation = -31854.111902 eV Core-core repulsion = 27786.570516 eV Total energy + Delta-G solvation = -4067.541386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.97542 -42.00878 -40.06414 -38.55043 -36.68880 -35.37722 -34.88431 -33.94947 -33.68842 -31.66463 -29.05307 -26.87585 -26.79781 -25.85803 -25.37334 -25.02695 -23.92283 -23.42222 -21.80597 -21.38734 -20.53043 -19.83810 -19.03378 -18.92578 -18.51602 -17.73369 -17.04199 -16.80451 -16.59079 -16.32687 -16.04575 -15.79189 -15.66176 -15.35321 -14.86682 -14.61901 -14.37084 -14.11215 -13.89033 -13.70712 -13.34038 -13.24136 -13.15015 -13.10426 -12.89844 -12.73667 -12.69528 -12.58693 -12.54323 -12.33942 -12.18777 -11.95410 -11.84188 -11.53823 -11.41276 -11.27753 -11.04131 -10.83766 -10.65967 -10.62132 -10.42794 -9.99496 -8.96899 -7.94819 -5.21338 0.25438 0.72279 1.21884 1.45924 1.46957 1.54449 1.77674 2.17648 2.54693 2.72859 2.87342 3.17319 3.36736 3.40655 3.59200 3.68757 3.74655 3.80142 3.84826 3.93011 3.95133 3.99792 4.05902 4.21453 4.29375 4.35393 4.55204 4.57012 4.58695 4.62838 4.66221 4.67261 4.77324 4.84000 4.87577 4.95068 4.98522 5.02496 5.05296 5.05931 5.11336 5.16687 5.20693 5.23003 5.48805 5.55422 5.62760 5.66209 6.26932 6.36418 6.98862 7.14727 7.34820 8.09600 8.32647 9.27087 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.005405 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.471992 B = 5178.710245 C = 7468.177005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.033 3.967 3 O 0.098 5.902 4 N -0.371 5.371 5 C 0.083 3.917 6 C -0.117 4.117 7 C -0.153 4.153 8 C -0.136 4.136 9 C -0.276 4.276 10 C 0.611 3.389 11 O -0.562 6.562 12 N -0.681 5.681 13 C 0.152 3.848 14 H 0.101 0.899 15 C -0.180 4.180 16 C 0.163 3.837 17 H 0.063 0.937 18 N -0.708 5.708 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.064 4.064 22 N -0.959 5.959 23 Si 0.962 3.038 24 H -0.293 1.293 25 H -0.299 1.299 26 H -0.271 1.271 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.124 4.124 30 C -0.094 4.094 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.403 0.597 40 H 0.040 0.960 41 H 0.105 0.895 42 H 0.373 0.627 43 H 0.248 0.752 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 0.003 -10.162 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 O 0.037 5.963 4 N -0.078 5.078 5 C -0.078 4.078 6 C -0.136 4.136 7 C -0.190 4.190 8 C -0.174 4.174 9 C -0.283 4.283 10 C 0.397 3.603 11 O -0.442 6.442 12 N -0.330 5.330 13 C 0.048 3.952 14 H 0.119 0.881 15 C -0.221 4.221 16 C 0.052 3.948 17 H 0.081 0.919 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.257 4.257 22 N -0.609 5.609 23 Si 0.793 3.207 24 H -0.221 1.221 25 H -0.225 1.225 26 H -0.196 1.196 27 C -0.122 4.122 28 C -0.161 4.161 29 C -0.162 4.162 30 C -0.132 4.132 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.118 0.882 39 H 0.241 0.759 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.207 0.793 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.095 0.575 -10.746 14.090 hybrid contribution 1.117 -0.099 1.282 1.703 sum -7.978 0.477 -9.463 12.387 Atomic orbital electron populations 1.20737 0.79810 1.06648 1.06233 1.25296 0.97488 0.83911 0.96375 1.84479 1.10838 1.33100 1.67837 1.73475 0.96568 1.16225 1.21527 1.23903 0.94921 0.88796 1.00152 1.20252 0.85657 0.99512 1.08211 1.23018 0.96451 0.99649 0.99908 1.23112 0.99688 1.03694 0.90915 1.21858 0.93294 0.95432 1.17749 1.16844 0.75770 0.84118 0.83613 1.90748 1.52704 1.68639 1.32071 1.45755 1.67957 1.11279 1.08021 1.21521 0.96365 0.79455 0.97900 0.88065 1.24238 0.97389 0.99857 1.00649 1.21298 0.91440 0.91243 0.90802 0.91883 1.42162 1.39688 1.04057 1.48830 1.19558 1.09012 0.92880 1.15576 0.90829 1.25353 1.02423 0.95250 1.02691 1.69763 1.45443 0.98092 1.47609 0.85306 0.79689 0.76993 0.78754 1.22059 1.22535 1.19577 1.23327 0.94154 0.99919 0.94762 1.22522 0.96404 0.97951 0.99261 1.22796 0.96097 0.96069 1.01189 1.22534 0.92032 0.95357 1.03306 0.86899 0.86151 0.88526 0.87367 0.88381 0.87031 0.85890 0.88176 0.75948 0.94136 0.87670 0.79331 0.94275 0.91130 0.92712 0.89624 0.90134 0.89632 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.33 71.24 0.74 -0.56 16 2 C 0.03 0.91 7.55 25.48 0.19 1.11 16 3 O 0.10 2.97 11.06 76.99 0.85 3.82 16 4 N -0.37 -12.84 11.71 -44.77 -0.52 -13.36 16 5 C 0.08 3.01 7.08 45.16 0.32 3.33 16 6 C -0.12 -4.03 6.31 -11.54 -0.07 -4.10 16 7 C -0.15 -4.51 10.16 30.59 0.31 -4.20 16 8 C -0.14 -3.65 10.23 30.59 0.31 -3.34 16 9 C -0.28 -9.42 6.24 -18.74 -0.12 -9.54 16 10 C 0.61 21.83 7.60 86.66 0.66 22.49 16 11 O -0.56 -22.36 16.75 -4.09 -0.07 -22.43 16 12 N -0.68 -23.40 4.71 -444.44 -2.09 -25.50 16 13 C 0.15 4.78 4.08 45.28 0.18 4.96 16 14 H 0.10 3.04 7.54 -2.39 -0.02 3.03 16 15 C -0.18 -6.11 7.68 31.23 0.24 -5.87 16 16 C 0.16 5.96 4.35 45.28 0.20 6.16 16 17 H 0.06 2.31 8.12 -2.39 -0.02 2.30 16 18 N -0.71 -32.83 4.97 -321.55 -1.60 -34.43 16 19 C -0.24 -12.56 9.98 84.03 0.84 -11.72 16 20 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 21 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 22 N -0.96 -55.74 13.06 21.65 0.28 -55.46 16 23 Si 0.96 45.15 29.55 68.60 2.03 47.17 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C -0.12 -3.43 0.76 -52.32 -0.04 -3.47 16 28 C -0.12 -3.46 7.18 30.88 0.22 -3.24 16 29 C -0.12 -2.53 8.08 31.23 0.25 -2.28 16 30 C -0.09 -2.01 7.84 30.88 0.24 -1.77 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 34 H 0.11 4.13 8.14 -2.39 -0.02 4.12 16 35 H 0.10 2.93 7.97 -2.39 -0.02 2.91 16 36 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.40 15.26 5.90 -92.70 -0.55 14.72 16 40 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.37 18.15 5.39 -92.71 -0.50 17.66 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.05 1.58 7.50 -2.39 -0.02 1.57 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.42 406.62 3.75 -63.66 By element: Atomic # 1 Polarization: 51.69 SS G_CDS: -0.07 Total: 51.63 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 4.94 Total: -15.10 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -3.93 Total: -128.75 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.78 Total: -18.61 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.42 3.75 -63.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.764 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds