Wall clock time and date at job start Wed Apr 1 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33495 * 126.82986 * 2 1 4 4 N 1.20660 * 113.15626 * 179.97438 * 3 2 1 5 5 C 1.30014 * 112.30141 * 359.70749 * 4 3 2 6 6 C 1.50700 * 127.33489 * 180.30345 * 5 4 3 7 7 C 1.52997 * 117.49794 * 8.77061 * 6 5 4 8 8 C 1.52992 * 117.49943 * 300.14679 * 6 5 4 9 9 C 1.37357 * 126.82775 * 179.97438 * 2 1 3 10 10 C 1.47398 * 128.56656 * 0.02562 * 9 2 1 11 11 O 1.21605 * 120.00301 * 90.01834 * 10 9 2 12 12 N 1.34782 * 119.99741 * 270.02196 * 10 9 2 13 13 C 1.46500 * 120.00299 * 180.02562 * 12 10 9 14 14 H 1.09006 * 112.94479 * 26.89402 * 13 12 10 15 15 C 1.53950 * 113.66037 * 255.49462 * 13 12 10 16 16 C 1.53952 * 87.37851 * 220.83072 * 15 13 12 17 17 H 1.09002 * 113.65815 * 270.21969 * 16 15 13 18 18 N 1.46497 * 113.66301 * 139.25791 * 16 15 13 19 19 C 1.36934 * 119.99961 * 104.50379 * 18 16 15 20 20 H 1.07996 * 120.00336 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99868 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99734 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46992 * 119.99803 * 23 21 19 26 26 H 1.48494 * 109.47441 * 240.00142 * 23 21 19 27 27 C 1.52909 * 86.78252 * 24.68886 * 16 15 13 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 16 15 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 16 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 16 15 31 31 H 1.09001 * 109.47163 * 270.03072 * 1 2 3 32 32 H 1.09003 * 109.46730 * 30.03344 * 1 2 3 33 33 H 1.08993 * 109.46708 * 150.02972 * 1 2 3 34 34 H 1.08999 * 115.54579 * 154.47591 * 6 5 4 35 35 H 1.08995 * 117.49980 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.49656 * 145.02249 * 7 6 5 37 37 H 1.09005 * 117.49978 * 214.98008 * 8 6 5 38 38 H 1.09003 * 117.50018 * 359.97438 * 8 6 5 39 39 H 0.96999 * 119.99672 * 359.97438 * 12 10 9 40 40 H 1.09002 * 113.58302 * 106.18673 * 15 13 12 41 41 H 1.09004 * 113.57731 * 335.46846 * 15 13 12 42 42 H 0.97000 * 119.99771 * 284.50085 * 18 16 15 43 43 H 0.97002 * 119.99791 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.66316 * 323.85618 * 28 27 16 45 45 H 1.08997 * 113.66044 * 94.91866 * 28 27 16 46 46 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 47 47 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 48 48 H 1.09004 * 113.66330 * 265.09006 * 30 27 16 49 49 H 1.09001 * 113.65876 * 36.13855 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3073 1.0685 0.0000 4 7 3.4797 0.7833 0.0005 5 6 3.6747 -0.5021 0.0071 6 6 4.9965 -1.2259 0.0161 7 6 6.2594 -0.3879 0.2248 8 6 5.9486 -0.9727 -1.1544 9 6 2.3304 -1.0995 0.0005 10 6 1.9587 -2.5258 0.0006 11 8 1.8061 -3.1145 -1.0524 12 7 1.7879 -3.1776 1.1679 13 6 1.4191 -4.5954 1.1682 14 1 1.7523 -5.1213 0.2735 15 6 -0.0580 -4.8494 1.5201 16 6 0.4217 -6.0462 2.3614 17 1 0.4741 -6.9806 1.8027 18 7 -0.2803 -6.1853 3.6397 19 6 -1.2301 -7.1590 3.7968 20 1 -1.4615 -7.8247 2.9785 21 6 -1.8949 -7.2912 5.0083 22 7 -1.6118 -6.4808 6.0061 23 14 -3.1912 -8.6190 5.2223 24 1 -3.3210 -9.3920 3.9610 25 1 -2.7880 -9.5316 6.3223 26 1 -4.4946 -7.9896 5.5540 27 6 1.7633 -5.3208 2.4713 28 6 3.0718 -6.0972 2.6233 29 6 3.6046 -4.8776 3.3971 30 6 2.1401 -4.5420 3.7322 31 1 -0.3633 0.0006 1.0277 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3632 -0.8902 -0.5133 34 1 4.9806 -2.2282 0.4442 35 1 6.1343 0.6870 0.3552 36 1 7.0748 -0.8388 0.7905 37 1 6.5595 -1.8082 -1.4962 38 1 5.6188 -0.2828 -1.9313 39 1 1.9100 -2.7080 2.0079 40 1 -0.6676 -5.1354 0.6630 41 1 -0.5083 -4.0527 2.1123 42 1 -0.0722 -5.5876 4.3749 43 1 -2.0766 -6.5729 6.8525 44 1 2.9790 -6.9958 3.2332 45 1 3.5867 -6.2755 1.6793 46 1 4.0876 -4.1352 2.7618 47 1 4.2024 -5.1404 4.2697 48 1 1.9107 -3.4779 3.6741 49 1 1.7853 -5.0035 4.6537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:21 Heat of formation + Delta-G solvation = 104.746837 kcal Electronic energy + Delta-G solvation = -30820.478118 eV Core-core repulsion = 26753.484980 eV Total energy + Delta-G solvation = -4066.993138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.08347 -40.70726 -38.91946 -37.78415 -34.97319 -34.22131 -33.91353 -33.08828 -32.42852 -29.89662 -28.27702 -25.72658 -25.56219 -24.64451 -24.26289 -23.74622 -22.74292 -22.14307 -20.59950 -20.44538 -19.58772 -18.52015 -17.96875 -17.57653 -17.20005 -16.67650 -16.24614 -15.74099 -15.29862 -15.11494 -14.79218 -14.56342 -14.49673 -13.95386 -13.57873 -13.54360 -13.09308 -13.06732 -12.87941 -12.49916 -12.38236 -12.16615 -11.95287 -11.90654 -11.81196 -11.59257 -11.52147 -11.36656 -11.08058 -10.87140 -10.78569 -10.74759 -10.34412 -10.19064 -10.10752 -9.96797 -9.80330 -9.70731 -9.58488 -9.49084 -8.87513 -8.81374 -7.00738 -5.83980 -3.12221 1.09127 1.61038 2.33757 2.62480 3.20820 3.39352 3.46093 3.47586 3.47925 3.71324 4.01150 4.48520 4.53411 4.57381 4.59773 4.65507 4.71240 4.80208 4.84208 4.95310 5.08810 5.09197 5.11393 5.19655 5.28737 5.29641 5.39268 5.40210 5.57284 5.58679 5.65460 5.71898 5.76603 5.77403 5.83151 5.94238 5.95889 6.07635 6.10253 6.18753 6.26037 6.33341 6.47127 6.54647 6.69788 6.85224 7.00723 7.49959 7.66705 7.99440 8.12338 8.34969 9.46809 10.03495 10.38365 11.38445 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002718 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.626848 B =10299.837465 C =11111.793525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.020 3.980 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.088 3.912 6 C -0.091 4.091 7 C -0.161 4.161 8 C -0.157 4.157 9 C -0.245 4.245 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.698 5.698 13 C 0.143 3.857 14 H 0.112 0.888 15 C -0.174 4.174 16 C 0.182 3.818 17 H 0.080 0.920 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.140 4.140 30 C -0.109 4.109 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.401 0.599 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.576 13.214 -10.734 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 O 0.034 5.966 4 N -0.061 5.061 5 C -0.074 4.074 6 C -0.110 4.110 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.253 4.253 10 C 0.382 3.618 11 O -0.404 6.404 12 N -0.349 5.349 13 C 0.039 3.961 14 H 0.130 0.870 15 C -0.216 4.216 16 C 0.069 3.931 17 H 0.097 0.903 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.124 4.124 28 C -0.159 4.159 29 C -0.178 4.178 30 C -0.146 4.146 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.237 0.763 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.093 13.683 -11.464 22.137 hybrid contribution -0.984 -0.931 0.833 1.590 sum 12.108 12.752 -10.631 20.549 Atomic orbital electron populations 1.20516 0.82948 1.05395 1.04983 1.24652 0.96057 0.85022 0.98610 1.84537 1.11049 1.32923 1.68048 1.73536 0.95929 1.16344 1.20327 1.23704 0.94217 0.88594 1.00867 1.20245 0.84824 0.99648 1.06272 1.23040 0.97040 1.00206 0.99516 1.23044 1.01151 1.03618 0.91729 1.21906 0.92572 0.95445 1.15345 1.16863 0.76785 0.83787 0.84351 1.90818 1.50717 1.67556 1.31335 1.46027 1.69136 1.11887 1.07829 1.22281 0.97002 0.79112 0.97725 0.87028 1.24304 0.94178 1.02182 1.00960 1.21130 0.88929 0.94272 0.88775 0.90260 1.42316 1.43723 1.38754 1.09700 1.19343 1.12389 1.08374 0.97188 0.90990 1.24743 1.00432 0.99449 0.96178 1.69659 1.45111 1.39849 1.03426 0.86130 0.81386 0.81212 0.77536 1.20501 1.21886 1.21875 1.23467 0.96728 0.97840 0.94395 1.22683 0.95746 0.97432 1.00036 1.22839 0.96543 0.98431 0.99970 1.22459 0.95199 0.98814 0.98150 0.88384 0.89066 0.88498 0.85390 0.87944 0.87697 0.87593 0.88469 0.76262 0.91997 0.90103 0.77872 0.93517 0.89460 0.92035 0.91112 0.91789 0.92544 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.33 36.01 0.37 -0.24 16 2 C 0.02 0.21 7.55 -34.63 -0.26 -0.05 16 3 O 0.10 1.10 11.06 18.65 0.21 1.31 16 4 N -0.36 -4.41 11.71 34.78 0.41 -4.01 16 5 C 0.09 1.07 7.08 -79.76 -0.56 0.50 16 6 C -0.09 -0.92 6.31 -91.78 -0.58 -1.50 16 7 C -0.16 -1.33 10.16 -26.73 -0.27 -1.61 16 8 C -0.16 -1.37 10.23 -26.74 -0.27 -1.64 16 9 C -0.25 -3.05 6.24 -102.89 -0.64 -3.70 16 10 C 0.60 8.33 7.60 -12.53 -0.10 8.24 16 11 O -0.53 -9.17 16.75 5.27 0.09 -9.08 16 12 N -0.70 -8.87 5.31 -54.37 -0.29 -9.16 16 13 C 0.14 2.05 4.09 -67.40 -0.28 1.78 16 14 H 0.11 1.68 7.55 -51.93 -0.39 1.29 16 15 C -0.17 -2.90 7.68 -25.75 -0.20 -3.09 16 16 C 0.18 3.37 4.35 -67.48 -0.29 3.07 16 17 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 18 N -0.71 -16.48 5.34 -52.99 -0.28 -16.77 16 19 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 C -0.12 -1.81 1.07 -154.63 -0.17 -1.97 16 28 C -0.12 -1.65 7.84 -26.28 -0.21 -1.86 16 29 C -0.14 -1.72 8.08 -25.75 -0.21 -1.93 16 30 C -0.11 -1.55 6.78 -26.28 -0.18 -1.73 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.10 0.92 7.97 -51.93 -0.41 0.50 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 4.60 6.65 -40.82 -0.27 4.33 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.39 9.46 6.13 -40.82 -0.25 9.21 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 49 H 0.10 1.68 6.97 -51.93 -0.36 1.32 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -31.22 406.72 -9.61 -40.83 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.48 Total: 13.00 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -4.09 Total: -12.72 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.56 Total: -56.23 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.29 Total: -7.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.22 -9.61 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.575 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds