Wall clock time and date at job start Wed Apr 1 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33495 * 126.82986 * 2 1 4 4 N 1.20660 * 113.15626 * 179.97438 * 3 2 1 5 5 C 1.30014 * 112.30141 * 359.70749 * 4 3 2 6 6 C 1.50700 * 127.33489 * 180.30345 * 5 4 3 7 7 C 1.52997 * 117.49794 * 8.77061 * 6 5 4 8 8 C 1.52992 * 117.49943 * 300.14679 * 6 5 4 9 9 C 1.37357 * 126.82775 * 179.97438 * 2 1 3 10 10 C 1.47398 * 128.56656 * 0.02562 * 9 2 1 11 11 O 1.21605 * 120.00301 * 90.01834 * 10 9 2 12 12 N 1.34782 * 119.99741 * 270.02196 * 10 9 2 13 13 C 1.46500 * 120.00299 * 180.02562 * 12 10 9 14 14 H 1.09006 * 112.94479 * 26.89402 * 13 12 10 15 15 C 1.53950 * 113.66037 * 255.49462 * 13 12 10 16 16 C 1.53952 * 87.37851 * 220.83072 * 15 13 12 17 17 H 1.09002 * 113.65815 * 270.21969 * 16 15 13 18 18 N 1.46497 * 113.66301 * 139.25791 * 16 15 13 19 19 C 1.36934 * 119.99961 * 104.50379 * 18 16 15 20 20 H 1.07996 * 120.00336 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99868 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99734 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46992 * 119.99803 * 23 21 19 26 26 H 1.48494 * 109.47441 * 240.00142 * 23 21 19 27 27 C 1.52909 * 86.78252 * 24.68886 * 16 15 13 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 16 15 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 16 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 16 15 31 31 H 1.09001 * 109.47163 * 270.03072 * 1 2 3 32 32 H 1.09003 * 109.46730 * 30.03344 * 1 2 3 33 33 H 1.08993 * 109.46708 * 150.02972 * 1 2 3 34 34 H 1.08999 * 115.54579 * 154.47591 * 6 5 4 35 35 H 1.08995 * 117.49980 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.49656 * 145.02249 * 7 6 5 37 37 H 1.09005 * 117.49978 * 214.98008 * 8 6 5 38 38 H 1.09003 * 117.50018 * 359.97438 * 8 6 5 39 39 H 0.96999 * 119.99672 * 359.97438 * 12 10 9 40 40 H 1.09002 * 113.58302 * 106.18673 * 15 13 12 41 41 H 1.09004 * 113.57731 * 335.46846 * 15 13 12 42 42 H 0.97000 * 119.99771 * 284.50085 * 18 16 15 43 43 H 0.97002 * 119.99791 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.66316 * 323.85618 * 28 27 16 45 45 H 1.08997 * 113.66044 * 94.91866 * 28 27 16 46 46 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 47 47 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 48 48 H 1.09004 * 113.66330 * 265.09006 * 30 27 16 49 49 H 1.09001 * 113.65876 * 36.13855 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3073 1.0685 0.0000 4 7 3.4797 0.7833 0.0005 5 6 3.6747 -0.5021 0.0071 6 6 4.9965 -1.2259 0.0161 7 6 6.2594 -0.3879 0.2248 8 6 5.9486 -0.9727 -1.1544 9 6 2.3304 -1.0995 0.0005 10 6 1.9587 -2.5258 0.0006 11 8 1.8061 -3.1145 -1.0524 12 7 1.7879 -3.1776 1.1679 13 6 1.4191 -4.5954 1.1682 14 1 1.7523 -5.1213 0.2735 15 6 -0.0580 -4.8494 1.5201 16 6 0.4217 -6.0462 2.3614 17 1 0.4741 -6.9806 1.8027 18 7 -0.2803 -6.1853 3.6397 19 6 -1.2301 -7.1590 3.7968 20 1 -1.4615 -7.8247 2.9785 21 6 -1.8949 -7.2912 5.0083 22 7 -1.6118 -6.4808 6.0061 23 14 -3.1912 -8.6190 5.2223 24 1 -3.3210 -9.3920 3.9610 25 1 -2.7880 -9.5316 6.3223 26 1 -4.4946 -7.9896 5.5540 27 6 1.7633 -5.3208 2.4713 28 6 3.0718 -6.0972 2.6233 29 6 3.6046 -4.8776 3.3971 30 6 2.1401 -4.5420 3.7322 31 1 -0.3633 0.0006 1.0277 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3632 -0.8902 -0.5133 34 1 4.9806 -2.2282 0.4442 35 1 6.1343 0.6870 0.3552 36 1 7.0748 -0.8388 0.7905 37 1 6.5595 -1.8082 -1.4962 38 1 5.6188 -0.2828 -1.9313 39 1 1.9100 -2.7080 2.0079 40 1 -0.6676 -5.1354 0.6630 41 1 -0.5083 -4.0527 2.1123 42 1 -0.0722 -5.5876 4.3749 43 1 -2.0766 -6.5729 6.8525 44 1 2.9790 -6.9958 3.2332 45 1 3.5867 -6.2755 1.6793 46 1 4.0876 -4.1352 2.7618 47 1 4.2024 -5.1404 4.2697 48 1 1.9107 -3.4779 3.6741 49 1 1.7853 -5.0035 4.6537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078683281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:16 Heat of formation + Delta-G solvation = 87.148610 kcal Electronic energy + Delta-G solvation = -30821.241235 eV Core-core repulsion = 26753.484980 eV Total energy + Delta-G solvation = -4067.756254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -45.97084 -41.96165 -40.09809 -38.50012 -36.38576 -35.64414 -34.90335 -34.01384 -33.84963 -31.70210 -29.06384 -26.93773 -26.77881 -25.98151 -25.37929 -24.95059 -23.57080 -23.31608 -21.76335 -21.66675 -20.45417 -19.61058 -19.32146 -18.87528 -18.41973 -17.68472 -17.51679 -16.67368 -16.50039 -16.34258 -16.11261 -15.81807 -15.58853 -15.25527 -14.89895 -14.38518 -14.37252 -14.13310 -13.88778 -13.70462 -13.46634 -13.18202 -13.11812 -13.06899 -12.86684 -12.80894 -12.65868 -12.53737 -12.39404 -12.31003 -12.26721 -12.04053 -11.81730 -11.51235 -11.40978 -11.37697 -11.06325 -10.98169 -10.64573 -10.61984 -10.44335 -10.02748 -8.93000 -7.93135 -5.19652 0.23056 0.72733 1.24881 1.48143 1.49288 1.58370 1.72767 2.19461 2.58022 2.77256 2.89515 3.20293 3.37551 3.41384 3.59175 3.67385 3.73229 3.80584 3.86058 3.92867 3.97816 3.98958 4.01034 4.15927 4.31883 4.34410 4.53858 4.56075 4.62106 4.64739 4.65036 4.67334 4.74442 4.76624 4.90275 4.95250 4.99575 5.02050 5.04960 5.08028 5.12335 5.14422 5.15816 5.27010 5.46327 5.52738 5.58231 5.69710 6.29734 6.40519 7.02961 7.12759 7.37246 8.13840 8.38016 9.30038 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002718 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.626848 B =10299.837465 C =11111.793525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.035 3.965 3 O 0.093 5.907 4 N -0.372 5.372 5 C 0.087 3.913 6 C -0.112 4.112 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.273 4.273 10 C 0.609 3.391 11 O -0.564 6.564 12 N -0.686 5.686 13 C 0.164 3.836 14 H 0.112 0.888 15 C -0.168 4.168 16 C 0.163 3.837 17 H 0.074 0.926 18 N -0.717 5.717 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.966 3.034 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.296 1.296 27 C -0.112 4.112 28 C -0.121 4.121 29 C -0.123 4.123 30 C -0.112 4.112 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.410 0.590 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.378 0.622 43 H 0.250 0.750 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.729 13.894 -11.573 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 O 0.034 5.966 4 N -0.079 5.079 5 C -0.075 4.075 6 C -0.131 4.131 7 C -0.184 4.184 8 C -0.193 4.193 9 C -0.280 4.280 10 C 0.395 3.605 11 O -0.443 6.443 12 N -0.336 5.336 13 C 0.058 3.942 14 H 0.130 0.870 15 C -0.210 4.210 16 C 0.052 3.948 17 H 0.092 0.908 18 N -0.355 5.355 19 C -0.371 4.371 20 H 0.092 0.908 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.193 1.193 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.114 4.114 28 C -0.159 4.159 29 C -0.160 4.160 30 C -0.150 4.150 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.151 0.849 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.212 0.788 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.262 14.383 -12.337 23.716 hybrid contribution -1.344 -1.107 1.015 2.016 sum 12.918 13.275 -11.321 21.709 Atomic orbital electron populations 1.20706 0.80799 1.06221 1.06229 1.25161 0.97099 0.84310 0.96281 1.84524 1.10980 1.33073 1.68068 1.73527 0.96358 1.16591 1.21429 1.24043 0.94895 0.88546 1.00021 1.20423 0.84653 1.00136 1.07864 1.23092 0.96448 0.99619 0.99285 1.23117 1.00643 1.04008 0.91520 1.21797 0.93400 0.94890 1.17917 1.16928 0.75709 0.84162 0.83744 1.90801 1.52374 1.68517 1.32580 1.45852 1.68513 1.11114 1.08136 1.21926 0.94946 0.80030 0.97260 0.87042 1.24128 0.95796 1.00836 1.00201 1.21407 0.91170 0.95050 0.87188 0.90784 1.42421 1.43824 1.38101 1.11180 1.19687 1.12161 1.08287 0.96929 0.90828 1.25446 1.02892 1.01810 0.96286 1.69795 1.46533 1.41709 1.03679 0.85175 0.78797 0.78886 0.77533 1.19280 1.22266 1.22292 1.23321 0.95369 0.97726 0.94978 1.22671 0.94974 0.97343 1.00872 1.22778 0.95154 0.97823 1.00258 1.22414 0.96946 0.99272 0.96330 0.86760 0.86635 0.89231 0.84858 0.88801 0.85549 0.85854 0.89454 0.75224 0.92234 0.90912 0.78797 0.94118 0.90946 0.90373 0.89002 0.90978 0.91104 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.33 71.24 0.74 -0.34 16 2 C 0.04 0.70 7.55 25.48 0.19 0.89 16 3 O 0.09 2.02 11.06 76.96 0.85 2.87 16 4 N -0.37 -8.83 11.71 -44.77 -0.52 -9.36 16 5 C 0.09 1.99 7.08 45.16 0.32 2.31 16 6 C -0.11 -2.07 6.31 -11.54 -0.07 -2.14 16 7 C -0.15 -2.13 10.16 30.59 0.31 -1.82 16 8 C -0.15 -2.41 10.23 30.59 0.31 -2.10 16 9 C -0.27 -6.43 6.24 -18.74 -0.12 -6.55 16 10 C 0.61 16.16 7.60 86.65 0.66 16.82 16 11 O -0.56 -19.08 16.75 -4.05 -0.07 -19.15 16 12 N -0.69 -16.27 5.31 -444.19 -2.36 -18.62 16 13 C 0.16 4.47 4.09 45.33 0.19 4.65 16 14 H 0.11 3.18 7.55 -2.38 -0.02 3.16 16 15 C -0.17 -5.51 7.68 31.23 0.24 -5.27 16 16 C 0.16 6.02 4.35 45.28 0.20 6.22 16 17 H 0.07 2.80 8.12 -2.39 -0.02 2.78 16 18 N -0.72 -33.99 5.34 -321.56 -1.72 -35.71 16 19 C -0.24 -12.78 9.98 84.04 0.84 -11.94 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 22 N -0.97 -57.16 13.06 21.65 0.28 -56.88 16 23 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 27 C -0.11 -3.21 1.07 -52.26 -0.06 -3.26 16 28 C -0.12 -3.09 7.84 30.89 0.24 -2.85 16 29 C -0.12 -2.72 8.08 31.23 0.25 -2.46 16 30 C -0.11 -3.08 6.78 30.89 0.21 -2.87 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 34 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 1.54 7.97 -2.39 -0.02 1.52 16 36 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.41 8.54 6.65 -92.71 -0.62 7.93 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.38 19.01 6.13 -92.71 -0.57 18.44 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.07 1.72 6.42 -2.38 -0.02 1.70 16 49 H 0.07 2.38 6.97 -2.39 -0.02 2.36 16 Total: -1.00 -67.93 406.72 3.21 -64.71 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.20 Total: 39.08 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 4.92 Total: -14.26 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.32 Total: -120.56 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.78 Total: -16.28 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.93 3.21 -64.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.862 kcal (2) G-P(sol) polarization free energy of solvation -67.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds