Wall clock time and date at job start Wed Apr 1 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33487 * 126.82968 * 2 1 4 4 N 1.20664 * 113.15356 * 179.97438 * 3 2 1 5 5 C 1.30013 * 112.30086 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.33296 * 180.02562 * 5 4 3 7 7 C 1.53002 * 117.49954 * 8.72254 * 6 5 4 8 8 C 1.53007 * 117.49868 * 300.06231 * 6 5 4 9 9 C 1.37356 * 126.82340 * 179.67887 * 2 1 3 10 10 C 1.47397 * 128.56820 * 0.02720 * 9 2 1 11 11 O 1.21606 * 120.00166 * 90.02172 * 10 9 2 12 12 N 1.34779 * 119.99804 * 270.01729 * 10 9 2 13 13 C 1.46502 * 119.99943 * 179.97438 * 12 10 9 14 14 H 1.08994 * 112.88703 * 334.66859 * 13 12 10 15 15 C 1.53950 * 113.66172 * 106.01949 * 13 12 10 16 16 C 1.54242 * 87.19281 * 89.78482 * 15 13 12 17 17 H 1.09001 * 113.74903 * 270.25335 * 16 15 13 18 18 N 1.46500 * 113.66594 * 139.20081 * 16 15 13 19 19 C 1.36938 * 119.99732 * 107.82468 * 18 16 15 20 20 H 1.08001 * 120.00206 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00117 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99528 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00213 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47300 * 59.99832 * 23 21 19 25 25 H 1.48505 * 109.47445 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47349 * 299.99721 * 23 21 19 27 27 C 1.52906 * 113.66242 * 203.32435 * 13 12 10 28 28 C 1.52910 * 121.13967 * 144.70947 * 27 13 12 29 29 C 1.53951 * 86.78586 * 209.38283 * 28 27 13 30 30 C 1.52913 * 121.13810 * 36.14619 * 27 13 12 31 31 H 1.09001 * 109.46953 * 0.02642 * 1 2 3 32 32 H 1.09000 * 109.47318 * 120.02240 * 1 2 3 33 33 H 1.09000 * 109.47161 * 240.02870 * 1 2 3 34 34 H 1.08996 * 115.55289 * 154.39213 * 6 5 4 35 35 H 1.09000 * 117.49671 * 359.97438 * 7 6 5 36 36 H 1.08993 * 117.50458 * 145.02402 * 7 6 5 37 37 H 1.09000 * 117.49913 * 214.98021 * 8 6 5 38 38 H 1.08996 * 117.49467 * 359.97438 * 8 6 5 39 39 H 0.97002 * 119.99889 * 0.02562 * 12 10 9 40 40 H 1.09001 * 113.57953 * 204.34174 * 15 13 12 41 41 H 1.09006 * 113.57583 * 335.13501 * 15 13 12 42 42 H 0.97001 * 120.00530 * 287.81406 * 18 16 15 43 43 H 0.97003 * 119.99568 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.65901 * 323.85484 * 28 27 13 45 45 H 1.08997 * 113.65922 * 94.90683 * 28 27 13 46 46 H 1.09004 * 113.57777 * 270.13139 * 29 28 27 47 47 H 1.08998 * 113.65142 * 139.34536 * 29 28 27 48 48 H 1.08996 * 113.66590 * 265.09288 * 30 27 13 49 49 H 1.08998 * 113.66020 * 36.05698 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4797 0.7832 0.0005 5 6 3.6746 -0.5023 0.0014 6 6 4.9964 -1.2261 0.0028 7 6 6.2602 -0.3888 0.2090 8 6 5.9434 -0.9699 -1.1713 9 6 2.3303 -1.0995 0.0062 10 6 1.9586 -2.5258 0.0136 11 8 1.8060 -3.1199 -1.0364 12 7 1.7878 -3.1716 1.1842 13 6 1.4178 -4.5891 1.1917 14 1 0.8954 -4.8956 0.2855 15 6 2.5729 -5.5271 1.5864 16 6 2.1077 -5.3612 3.0476 17 1 2.5762 -4.5240 3.5650 18 7 2.1475 -6.6041 3.8221 19 6 3.1030 -6.7790 4.7872 20 1 3.8276 -6.0010 4.9772 21 6 3.1411 -7.9569 5.5208 22 7 2.2584 -8.9053 5.2890 23 14 4.4450 -8.1959 6.8369 24 1 4.3082 -7.1356 7.8676 25 1 4.2702 -9.5273 7.4709 26 1 5.7929 -8.1145 6.2189 27 6 0.7257 -5.0359 2.4798 28 6 -0.3866 -6.0849 2.4570 29 6 -0.9566 -5.3819 3.7023 30 6 -0.2362 -4.1084 3.2233 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5142 -0.8898 33 1 -0.3633 -0.5134 0.8902 34 1 4.9825 -2.2295 0.4285 35 1 6.1357 0.6857 0.3432 36 1 7.0779 -0.8413 0.7698 37 1 6.5528 -1.8046 -1.5178 38 1 5.6102 -0.2782 -1.9449 39 1 1.9092 -2.6976 2.0218 40 1 2.4600 -6.5421 1.2054 41 1 3.5604 -5.1087 1.3914 42 1 1.4969 -7.3030 3.6514 43 1 2.2852 -9.7286 5.8014 44 1 -1.0334 -6.0176 1.5822 45 1 -0.0357 -7.0988 2.6491 46 1 -0.5679 -5.7756 4.6415 47 1 -2.0432 -5.2962 3.6972 48 1 0.2348 -3.5434 4.0277 49 1 -0.8396 -3.4845 2.5640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078683282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:37 Heat of formation + Delta-G solvation = 105.412501 kcal Electronic energy + Delta-G solvation = -30809.315677 eV Core-core repulsion = 26742.351405 eV Total energy + Delta-G solvation = -4066.964272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -45.08765 -40.65806 -38.94709 -37.71467 -35.06683 -34.15970 -33.93713 -33.08342 -32.17891 -29.91275 -28.29938 -25.67756 -25.43984 -24.62812 -24.18150 -23.87620 -22.66849 -22.12694 -21.01735 -20.13080 -19.53816 -18.32902 -18.01466 -17.77903 -17.04550 -16.74365 -16.02835 -15.71005 -15.23017 -15.01033 -14.81649 -14.70378 -14.32070 -13.88604 -13.63143 -13.59493 -13.49069 -13.01321 -12.65643 -12.52942 -12.28827 -12.05872 -11.89853 -11.85189 -11.79704 -11.70979 -11.51479 -11.39680 -10.91061 -10.86558 -10.70016 -10.64718 -10.30553 -10.23355 -10.08199 -9.90778 -9.77003 -9.68607 -9.59798 -9.42355 -8.88627 -8.79164 -7.01643 -5.83763 -3.12452 1.07545 1.62483 2.33159 2.61217 3.16532 3.39473 3.44677 3.45181 3.54428 3.73182 4.03115 4.52033 4.53305 4.59750 4.63279 4.71073 4.74791 4.82287 4.97132 5.03553 5.04404 5.08664 5.18680 5.23418 5.24020 5.36771 5.39563 5.45483 5.56016 5.64636 5.66843 5.77667 5.79960 5.84097 5.90581 5.95211 6.00834 6.06702 6.10696 6.26526 6.36651 6.42621 6.53015 6.58681 6.83770 6.87751 6.99564 7.48189 7.63627 8.00190 8.12576 8.35014 9.46667 10.03391 10.38199 11.38340 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.003112 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.866870 B = 8994.781659 C =10531.293772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.017 3.983 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.091 3.909 6 C -0.093 4.093 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.243 4.243 10 C 0.600 3.400 11 O -0.527 6.527 12 N -0.690 5.690 13 C 0.128 3.872 14 H 0.097 0.903 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.076 0.924 18 N -0.707 5.707 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.121 4.121 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.126 4.126 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 18.171 -10.385 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 O 0.035 5.965 4 N -0.061 5.061 5 C -0.071 4.071 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.251 4.251 10 C 0.384 3.616 11 O -0.403 6.403 12 N -0.339 5.339 13 C 0.023 3.977 14 H 0.115 0.885 15 C -0.216 4.216 16 C 0.079 3.921 17 H 0.093 0.907 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.123 4.123 28 C -0.147 4.147 29 C -0.168 4.168 30 C -0.164 4.164 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.523 18.765 -10.962 21.878 hybrid contribution 0.340 -0.969 1.037 1.459 sum -2.184 17.795 -9.925 20.493 Atomic orbital electron populations 1.20488 0.83102 1.05164 1.04937 1.24597 0.95995 0.85087 0.98998 1.84543 1.11083 1.32879 1.68008 1.73543 0.95822 1.16360 1.20409 1.23725 0.94276 0.88503 1.00548 1.20288 0.84812 0.99805 1.06293 1.23052 0.97069 1.00123 0.99512 1.23054 1.01199 1.03622 0.91620 1.21856 0.92648 0.95318 1.15248 1.16808 0.76877 0.83713 0.84177 1.90822 1.50474 1.67347 1.31621 1.45580 1.69150 1.11341 1.07818 1.21790 0.97984 0.79142 0.98774 0.88518 1.24331 0.97002 0.99033 1.01274 1.21334 0.90366 0.90786 0.89599 0.90655 1.42385 1.36467 1.14870 1.40817 1.19227 1.07278 1.00438 1.10767 0.91261 1.24733 0.99008 0.96704 1.00106 1.69643 1.37154 1.07353 1.43707 0.86295 0.81363 0.76952 0.81716 1.21261 1.21672 1.21242 1.23589 0.95883 0.97876 0.94965 1.22454 0.95595 0.98869 0.97812 1.22736 0.98595 0.96398 0.99073 1.22646 0.98045 0.96385 0.99318 0.89184 0.88538 0.88511 0.85199 0.87985 0.87616 0.87536 0.88522 0.76326 0.89452 0.92278 0.77667 0.93358 0.90726 0.90227 0.89161 0.92447 0.91741 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.33 36.01 0.37 -0.13 16 2 C 0.02 0.17 7.55 -34.63 -0.26 -0.09 16 3 O 0.10 1.08 11.06 18.66 0.21 1.29 16 4 N -0.36 -4.45 11.71 34.78 0.41 -4.04 16 5 C 0.09 1.14 7.08 -79.77 -0.56 0.57 16 6 C -0.09 -1.04 6.31 -91.77 -0.58 -1.62 16 7 C -0.16 -1.50 10.17 -26.69 -0.27 -1.77 16 8 C -0.16 -1.51 10.24 -26.69 -0.27 -1.78 16 9 C -0.24 -2.99 6.24 -102.90 -0.64 -3.64 16 10 C 0.60 8.32 7.63 -12.53 -0.10 8.22 16 11 O -0.53 -9.18 16.73 5.27 0.09 -9.09 16 12 N -0.69 -8.72 5.06 -54.46 -0.28 -8.99 16 13 C 0.13 1.86 4.09 -67.48 -0.28 1.58 16 14 H 0.10 1.49 7.50 -51.93 -0.39 1.10 16 15 C -0.17 -2.96 7.70 -25.59 -0.20 -3.15 16 16 C 0.19 3.50 4.29 -67.33 -0.29 3.21 16 17 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 18 N -0.71 -16.48 5.32 -52.84 -0.28 -16.77 16 19 C -0.25 -6.50 9.97 -15.06 -0.15 -6.65 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 C -0.12 -1.80 0.91 -154.71 -0.14 -1.94 16 28 C -0.11 -1.65 7.47 -26.28 -0.20 -1.85 16 29 C -0.13 -1.90 8.08 -25.75 -0.21 -2.11 16 30 C -0.13 -1.65 7.46 -26.28 -0.20 -1.85 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.40 4.50 8.56 -40.82 -0.35 4.15 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.39 9.59 5.92 -40.82 -0.24 9.34 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.40 6.42 -51.93 -0.33 1.07 16 46 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -31.36 409.43 -9.66 -41.02 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -7.61 Total: 13.34 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -4.07 Total: -13.33 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.58 Total: -56.12 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.29 Total: -7.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.36 -9.66 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.431 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds