Wall clock time and date at job start Wed Apr 1 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33487 * 126.82968 * 2 1 4 4 N 1.20664 * 113.15356 * 179.97438 * 3 2 1 5 5 C 1.30013 * 112.30086 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.33296 * 180.02562 * 5 4 3 7 7 C 1.53002 * 117.49954 * 8.72254 * 6 5 4 8 8 C 1.53007 * 117.49868 * 300.06231 * 6 5 4 9 9 C 1.37356 * 126.82340 * 179.67887 * 2 1 3 10 10 C 1.47397 * 128.56820 * 0.02720 * 9 2 1 11 11 O 1.21606 * 120.00166 * 90.02172 * 10 9 2 12 12 N 1.34779 * 119.99804 * 270.01729 * 10 9 2 13 13 C 1.46502 * 119.99943 * 179.97438 * 12 10 9 14 14 H 1.08994 * 112.88703 * 334.66859 * 13 12 10 15 15 C 1.53950 * 113.66172 * 106.01949 * 13 12 10 16 16 C 1.54242 * 87.19281 * 89.78482 * 15 13 12 17 17 H 1.09001 * 113.74903 * 270.25335 * 16 15 13 18 18 N 1.46500 * 113.66594 * 139.20081 * 16 15 13 19 19 C 1.36938 * 119.99732 * 107.82468 * 18 16 15 20 20 H 1.08001 * 120.00206 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00117 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99528 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00213 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47300 * 59.99832 * 23 21 19 25 25 H 1.48505 * 109.47445 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47349 * 299.99721 * 23 21 19 27 27 C 1.52906 * 113.66242 * 203.32435 * 13 12 10 28 28 C 1.52910 * 121.13967 * 144.70947 * 27 13 12 29 29 C 1.53951 * 86.78586 * 209.38283 * 28 27 13 30 30 C 1.52913 * 121.13810 * 36.14619 * 27 13 12 31 31 H 1.09001 * 109.46953 * 0.02642 * 1 2 3 32 32 H 1.09000 * 109.47318 * 120.02240 * 1 2 3 33 33 H 1.09000 * 109.47161 * 240.02870 * 1 2 3 34 34 H 1.08996 * 115.55289 * 154.39213 * 6 5 4 35 35 H 1.09000 * 117.49671 * 359.97438 * 7 6 5 36 36 H 1.08993 * 117.50458 * 145.02402 * 7 6 5 37 37 H 1.09000 * 117.49913 * 214.98021 * 8 6 5 38 38 H 1.08996 * 117.49467 * 359.97438 * 8 6 5 39 39 H 0.97002 * 119.99889 * 0.02562 * 12 10 9 40 40 H 1.09001 * 113.57953 * 204.34174 * 15 13 12 41 41 H 1.09006 * 113.57583 * 335.13501 * 15 13 12 42 42 H 0.97001 * 120.00530 * 287.81406 * 18 16 15 43 43 H 0.97003 * 119.99568 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.65901 * 323.85484 * 28 27 13 45 45 H 1.08997 * 113.65922 * 94.90683 * 28 27 13 46 46 H 1.09004 * 113.57777 * 270.13139 * 29 28 27 47 47 H 1.08998 * 113.65142 * 139.34536 * 29 28 27 48 48 H 1.08996 * 113.66590 * 265.09288 * 30 27 13 49 49 H 1.08998 * 113.66020 * 36.05698 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4797 0.7832 0.0005 5 6 3.6746 -0.5023 0.0014 6 6 4.9964 -1.2261 0.0028 7 6 6.2602 -0.3888 0.2090 8 6 5.9434 -0.9699 -1.1713 9 6 2.3303 -1.0995 0.0062 10 6 1.9586 -2.5258 0.0136 11 8 1.8060 -3.1199 -1.0364 12 7 1.7878 -3.1716 1.1842 13 6 1.4178 -4.5891 1.1917 14 1 0.8954 -4.8956 0.2855 15 6 2.5729 -5.5271 1.5864 16 6 2.1077 -5.3612 3.0476 17 1 2.5762 -4.5240 3.5650 18 7 2.1475 -6.6041 3.8221 19 6 3.1030 -6.7790 4.7872 20 1 3.8276 -6.0010 4.9772 21 6 3.1411 -7.9569 5.5208 22 7 2.2584 -8.9053 5.2890 23 14 4.4450 -8.1959 6.8369 24 1 4.3082 -7.1356 7.8676 25 1 4.2702 -9.5273 7.4709 26 1 5.7929 -8.1145 6.2189 27 6 0.7257 -5.0359 2.4798 28 6 -0.3866 -6.0849 2.4570 29 6 -0.9566 -5.3819 3.7023 30 6 -0.2362 -4.1084 3.2233 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5142 -0.8898 33 1 -0.3633 -0.5134 0.8902 34 1 4.9825 -2.2295 0.4285 35 1 6.1357 0.6857 0.3432 36 1 7.0779 -0.8413 0.7698 37 1 6.5528 -1.8046 -1.5178 38 1 5.6102 -0.2782 -1.9449 39 1 1.9092 -2.6976 2.0218 40 1 2.4600 -6.5421 1.2054 41 1 3.5604 -5.1087 1.3914 42 1 1.4969 -7.3030 3.6514 43 1 2.2852 -9.7286 5.8014 44 1 -1.0334 -6.0176 1.5822 45 1 -0.0357 -7.0988 2.6491 46 1 -0.5679 -5.7756 4.6415 47 1 -2.0432 -5.2962 3.6972 48 1 0.2348 -3.5434 4.0277 49 1 -0.8396 -3.4845 2.5640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078683282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:25 Heat of formation + Delta-G solvation = 87.474670 kcal Electronic energy + Delta-G solvation = -30810.093520 eV Core-core repulsion = 26742.351405 eV Total energy + Delta-G solvation = -4067.742115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 13.16 seconds Orbital eigenvalues (eV) -45.97074 -41.93199 -40.12694 -38.51693 -36.35835 -35.78616 -34.88389 -33.92893 -33.64373 -31.69059 -29.01015 -26.92325 -26.64765 -25.99212 -25.49716 -24.92024 -23.64480 -23.38562 -22.13225 -21.33704 -20.40798 -19.63288 -19.26218 -18.86487 -18.43634 -17.75503 -17.25183 -16.72924 -16.55564 -16.34227 -15.96217 -15.84884 -15.58761 -15.34721 -14.97244 -14.38480 -14.18229 -14.10246 -13.87872 -13.66457 -13.45367 -13.31570 -13.14184 -13.07985 -12.85585 -12.75294 -12.66117 -12.54947 -12.50260 -12.32546 -12.19677 -11.91177 -11.86214 -11.52318 -11.40255 -11.30826 -11.04750 -10.89647 -10.68437 -10.61506 -10.42164 -10.00793 -8.94610 -7.92989 -5.20087 0.25897 0.72068 1.25179 1.47900 1.49485 1.55495 1.74538 2.18278 2.57036 2.75082 2.88323 3.20349 3.37929 3.47761 3.63157 3.72279 3.78033 3.79646 3.86273 3.92812 3.95490 4.01082 4.04864 4.13923 4.27125 4.36305 4.58183 4.60884 4.62344 4.63489 4.66199 4.71458 4.75363 4.87916 4.88075 4.91151 4.97964 5.02280 5.08709 5.10801 5.11268 5.16123 5.18598 5.25621 5.49644 5.59293 5.61850 5.68357 6.29125 6.40977 7.04744 7.15347 7.36570 8.13809 8.36931 9.29910 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.003112 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.866870 B = 8994.781659 C =10531.293772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.040 3.960 3 O 0.096 5.904 4 N -0.371 5.371 5 C 0.083 3.917 6 C -0.115 4.115 7 C -0.148 4.148 8 C -0.153 4.153 9 C -0.273 4.273 10 C 0.612 3.388 11 O -0.564 6.564 12 N -0.677 5.677 13 C 0.150 3.850 14 H 0.095 0.905 15 C -0.173 4.173 16 C 0.178 3.822 17 H 0.078 0.922 18 N -0.719 5.719 19 C -0.242 4.242 20 H 0.075 0.925 21 C -0.071 4.071 22 N -0.967 5.967 23 Si 0.966 3.034 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.281 1.281 27 C -0.111 4.111 28 C -0.111 4.111 29 C -0.131 4.131 30 C -0.109 4.109 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.412 0.588 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.378 0.622 43 H 0.250 0.750 44 H 0.101 0.899 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 20.642 -10.651 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 O 0.036 5.964 4 N -0.078 5.078 5 C -0.079 4.079 6 C -0.134 4.134 7 C -0.185 4.185 8 C -0.191 4.191 9 C -0.280 4.280 10 C 0.397 3.603 11 O -0.443 6.443 12 N -0.326 5.326 13 C 0.044 3.956 14 H 0.113 0.887 15 C -0.215 4.215 16 C 0.067 3.933 17 H 0.096 0.904 18 N -0.357 5.357 19 C -0.374 4.374 20 H 0.092 0.908 21 C -0.263 4.263 22 N -0.618 5.618 23 Si 0.796 3.204 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.207 1.207 27 C -0.113 4.113 28 C -0.149 4.149 29 C -0.168 4.168 30 C -0.146 4.146 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.249 0.751 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.212 0.788 43 H 0.059 0.941 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.237 21.312 -11.229 24.305 hybrid contribution 0.552 -1.673 1.052 2.052 sum -2.685 19.639 -10.177 22.281 Atomic orbital electron populations 1.20768 0.80141 1.07241 1.05757 1.25246 0.97301 0.83928 0.95937 1.84527 1.10900 1.33167 1.67809 1.73533 0.96527 1.16362 1.21367 1.23959 0.94850 0.88684 1.00360 1.20380 0.85228 0.99909 1.07864 1.23091 0.96358 0.99735 0.99295 1.23119 1.00607 1.03917 0.91477 1.21717 0.93252 0.94864 1.18195 1.16888 0.75723 0.84125 0.83553 1.90805 1.52179 1.68376 1.32933 1.45431 1.68582 1.10413 1.08202 1.21459 0.96155 0.79630 0.98383 0.88662 1.24193 0.98042 0.99016 1.00279 1.21623 0.93251 0.88968 0.89425 0.90382 1.42526 1.35764 1.16412 1.41006 1.19619 1.07230 1.00110 1.10436 0.90751 1.25456 1.01278 0.96898 1.02678 1.69798 1.39171 1.07715 1.45091 0.85322 0.79173 0.76454 0.79471 1.20388 1.22447 1.20746 1.23335 0.94570 0.98825 0.94607 1.22517 0.96065 0.97074 0.99259 1.22645 1.00142 0.97021 0.97007 1.22638 0.96978 0.95733 0.99298 0.86620 0.88165 0.86859 0.85779 0.88364 0.86074 0.86274 0.88964 0.75126 0.91160 0.92480 0.78827 0.94117 0.88108 0.93470 0.92739 0.89983 0.91442 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.33 71.24 0.74 0.00 16 2 C 0.04 0.70 7.55 25.48 0.19 0.90 16 3 O 0.10 1.97 11.06 77.03 0.85 2.83 16 4 N -0.37 -8.85 11.71 -44.78 -0.52 -9.38 16 5 C 0.08 2.00 7.08 45.16 0.32 2.32 16 6 C -0.11 -2.50 6.31 -11.54 -0.07 -2.57 16 7 C -0.15 -2.59 10.17 30.62 0.31 -2.28 16 8 C -0.15 -2.82 10.24 30.62 0.31 -2.50 16 9 C -0.27 -6.30 6.24 -18.75 -0.12 -6.41 16 10 C 0.61 16.04 7.63 86.65 0.66 16.71 16 11 O -0.56 -19.13 16.73 -4.05 -0.07 -19.19 16 12 N -0.68 -15.82 5.06 -444.45 -2.25 -18.07 16 13 C 0.15 4.13 4.09 45.28 0.19 4.31 16 14 H 0.10 2.78 7.50 -2.39 -0.02 2.77 16 15 C -0.17 -5.89 7.70 31.33 0.24 -5.65 16 16 C 0.18 6.46 4.29 45.38 0.19 6.66 16 17 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 18 N -0.72 -34.27 5.32 -321.08 -1.71 -35.98 16 19 C -0.24 -12.94 9.97 84.03 0.84 -12.10 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 22 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16 23 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C -0.11 -3.16 0.91 -52.31 -0.05 -3.21 16 28 C -0.11 -3.26 7.47 30.89 0.23 -3.02 16 29 C -0.13 -3.60 8.08 31.23 0.25 -3.35 16 30 C -0.11 -2.53 7.46 30.89 0.23 -2.30 16 31 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.10 1.81 7.97 -2.39 -0.02 1.79 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.41 8.22 8.56 -92.71 -0.79 7.43 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.38 19.43 5.92 -92.71 -0.55 18.88 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.05 1.70 6.42 -2.39 -0.02 1.69 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -69.57 409.43 3.19 -66.38 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.36 Total: 39.71 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.94 Total: -16.00 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.20 Total: -121.05 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.78 Total: -16.37 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.57 3.19 -66.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078683282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.858 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.16 seconds