Wall clock time and date at job start Wed Apr 1 2020 04:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38359 * 119.40834 * 2 1 4 4 C 1.38333 * 119.45918 * 179.71666 * 3 2 1 5 5 C 1.50706 * 120.82689 * 180.25095 * 4 3 2 6 6 C 1.39988 * 118.34663 * 0.50546 * 4 3 2 7 7 C 1.47528 * 120.59547 * 179.78023 * 6 4 3 8 8 O 1.21596 * 119.99836 * 269.71765 * 7 6 4 9 9 N 1.34773 * 120.00211 * 89.71120 * 7 6 4 10 10 C 1.46508 * 119.99818 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.88574 * 23.66055 * 10 9 7 12 12 C 1.53948 * 113.66423 * 252.19151 * 10 9 7 13 13 C 1.53957 * 87.29686 * 270.26262 * 12 10 9 14 14 H 1.09002 * 113.65722 * 89.73762 * 13 12 10 15 15 N 1.46498 * 113.66407 * 220.79629 * 13 12 10 16 16 C 1.36932 * 119.99792 * 252.18888 * 15 13 12 17 17 H 1.08000 * 120.00566 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99800 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00122 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99829 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47346 * 89.99703 * 20 18 16 22 22 H 1.48504 * 109.46928 * 209.99602 * 20 18 16 23 23 H 1.48499 * 109.47327 * 329.99173 * 20 18 16 24 24 C 1.52909 * 113.65947 * 155.00224 * 10 9 7 25 25 C 1.52910 * 121.13680 * 215.29369 * 24 10 9 26 26 C 1.53949 * 86.78077 * 100.82535 * 25 24 10 27 27 C 1.52905 * 121.13655 * 323.86096 * 24 10 9 28 28 C 1.40277 * 118.80725 * 359.49800 * 6 4 3 29 29 O 1.35427 * 119.79774 * 180.23450 * 28 6 4 30 30 N 1.31876 * 119.40910 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47081 * 270.02041 * 1 2 3 32 32 H 1.09005 * 109.46727 * 30.02293 * 1 2 3 33 33 H 1.08995 * 109.47010 * 150.01845 * 1 2 3 34 34 H 1.07999 * 120.26956 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.47289 * 270.25578 * 5 4 3 36 36 H 1.09001 * 109.46642 * 30.25764 * 5 4 3 37 37 H 1.08995 * 109.46523 * 150.25232 * 5 4 3 38 38 H 0.96995 * 120.00175 * 0.02562 * 9 7 6 39 39 H 1.09001 * 113.57503 * 155.65942 * 12 10 9 40 40 H 1.08996 * 113.57974 * 24.86866 * 12 10 9 41 41 H 0.96998 * 119.99697 * 72.18259 * 15 13 12 42 42 H 0.96992 * 120.00080 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.66074 * 215.29190 * 25 24 10 44 44 H 1.08994 * 113.66448 * 346.35155 * 25 24 10 45 45 H 1.09009 * 113.57633 * 270.12923 * 26 25 24 46 46 H 1.09000 * 113.65567 * 139.34741 * 26 25 24 47 47 H 1.08990 * 113.66878 * 13.64950 * 27 24 10 48 48 H 1.09000 * 113.66430 * 144.61574 * 27 24 10 49 49 H 0.96696 * 114.00253 * 90.00085 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0060 5 6 4.3408 2.5014 0.0118 6 6 4.2355 -0.0249 0.0009 7 6 5.7097 -0.0814 0.0021 8 8 6.3180 -0.1051 -1.0506 9 7 6.3823 -0.1067 1.1697 10 6 7.8463 -0.1634 1.1707 11 1 8.2860 0.2222 0.2510 12 6 8.4114 -1.5285 1.6033 13 6 8.3955 -0.9956 3.0476 14 1 7.4606 -1.1874 3.5742 15 7 9.5777 -1.3723 3.8264 16 6 9.4735 -2.3104 4.8185 17 1 8.5198 -2.7723 5.0271 18 6 10.5936 -2.6670 5.5569 19 7 11.7558 -2.1038 5.3031 20 14 10.4517 -3.9473 6.9097 21 1 10.7025 -5.2966 6.3427 22 1 11.4527 -3.6614 7.9687 23 1 9.0870 -3.9015 7.4934 24 6 8.4815 0.4051 2.4401 25 6 9.8077 1.1645 2.3887 26 6 8.9723 2.4549 2.4726 27 6 7.8766 1.6147 3.1535 28 6 3.4758 -1.2041 0.0009 29 8 4.0992 -2.4063 0.0009 30 7 2.1546 -1.1488 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6412 2.1376 -0.0004 35 1 4.5272 2.8179 -1.0144 36 1 3.7618 3.2667 0.5287 37 1 5.2911 2.3559 0.5255 38 1 5.8971 -0.0881 2.0094 39 1 9.4135 -1.7260 1.2224 40 1 7.7238 -2.3577 1.4368 41 1 10.4342 -0.9573 3.6393 42 1 12.5385 -2.3533 5.8188 43 1 10.4419 0.9967 3.2592 44 1 10.3415 1.0495 1.4454 45 1 8.6786 2.8482 1.4993 46 1 9.4059 3.2151 3.1225 47 1 6.8678 1.8593 2.8211 48 1 7.9667 1.5727 4.2389 49 1 4.2802 -2.7555 0.8843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078693067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:34 Heat of formation + Delta-G solvation = 11.841125 kcal Electronic energy + Delta-G solvation = -30868.083761 eV Core-core repulsion = 26797.061929 eV Total energy + Delta-G solvation = -4071.021832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.28398 -40.47163 -38.69183 -37.60767 -35.11216 -34.54932 -34.08155 -32.37502 -31.99114 -29.92439 -28.64633 -27.86156 -25.53368 -24.88130 -24.17094 -23.67517 -22.56059 -21.83387 -20.82996 -20.16080 -18.69017 -18.39902 -17.59200 -17.43351 -17.08611 -16.15709 -15.73898 -15.32006 -15.24640 -14.71973 -14.60840 -14.32380 -14.22004 -13.89244 -13.67356 -13.47498 -13.34640 -13.22508 -12.77198 -12.71555 -12.51304 -12.33129 -12.19250 -12.09963 -11.90384 -11.89038 -11.69787 -11.42179 -10.97027 -10.86780 -10.72044 -10.39207 -10.23114 -10.14856 -9.90189 -9.87286 -9.75998 -9.60805 -9.40589 -9.10156 -8.86755 -8.81623 -6.99933 -5.83107 -3.11590 0.47107 0.76988 2.45803 2.93739 3.15678 3.30980 3.39530 3.44879 3.46373 4.13174 4.17178 4.50575 4.54509 4.64305 4.70364 4.84135 4.92525 4.95421 4.99792 5.03379 5.16377 5.17807 5.20800 5.21014 5.24424 5.40696 5.47190 5.59028 5.61720 5.67218 5.76320 5.81884 5.87353 5.97376 6.00810 6.08487 6.12453 6.14432 6.17471 6.32327 6.37969 6.44316 6.60060 6.73255 6.88928 7.00607 7.17463 7.47585 7.55835 7.64321 8.13806 8.35640 9.47251 10.04845 10.39502 11.39174 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.002893 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.840844 B = 9675.971678 C =10784.997377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.188 4.188 4 C 0.012 3.988 5 C -0.124 4.124 6 C -0.202 4.202 7 C 0.577 3.423 8 O -0.525 6.525 9 N -0.696 5.696 10 C 0.142 3.858 11 H 0.097 0.903 12 C -0.174 4.174 13 C 0.181 3.819 14 H 0.073 0.927 15 N -0.707 5.707 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.125 4.125 25 C -0.104 4.104 26 C -0.140 4.140 27 C -0.123 4.123 28 C 0.357 3.643 29 O -0.472 6.472 30 N -0.506 5.506 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.831 11.453 -8.870 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.208 4.208 4 C 0.004 3.996 5 C -0.181 4.181 6 C -0.208 4.208 7 C 0.361 3.639 8 O -0.400 6.400 9 N -0.346 5.346 10 C 0.036 3.964 11 H 0.115 0.885 12 C -0.216 4.216 13 C 0.068 3.932 14 H 0.091 0.909 15 N -0.346 5.346 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.128 4.128 25 C -0.142 4.142 26 C -0.177 4.177 27 C -0.160 4.160 28 C 0.178 3.822 29 O -0.280 6.280 30 N -0.227 5.227 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.222 0.778 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -19.818 10.533 -10.055 24.593 hybrid contribution 0.583 -0.147 1.503 1.619 sum -19.235 10.386 -8.552 23.473 Atomic orbital electron populations 1.20803 0.88132 1.03927 1.03563 1.21188 0.97001 0.87071 0.91763 1.21770 0.93605 0.99621 1.05796 1.20264 0.93675 0.94159 0.91504 1.20950 1.00245 0.93056 1.03832 1.20870 0.95033 0.94142 1.10781 1.17719 0.85809 0.76144 0.84249 1.90821 1.69018 1.48876 1.31298 1.45642 1.07194 1.73871 1.07849 1.21572 0.78284 0.98521 0.97984 0.88484 1.24301 1.00924 0.95136 1.01271 1.21377 0.92040 0.90270 0.89472 0.90875 1.42358 1.06222 1.47200 1.38782 1.19271 0.94784 1.14408 1.09087 0.91209 1.24747 0.95607 1.00307 1.00069 1.69647 0.99235 1.45736 1.43276 0.86210 0.77001 0.81439 0.81636 1.21683 1.21785 1.20782 1.23449 0.97758 0.95891 0.95698 1.22462 0.95006 0.94003 1.02739 1.22823 0.97912 0.96781 1.00205 1.22631 0.97308 0.95837 1.00232 1.19008 0.86323 0.84538 0.92355 1.84757 1.76556 1.32539 1.34159 1.67058 1.09124 1.30419 1.16052 0.89815 0.90216 0.90090 0.83804 0.89586 0.90082 0.90519 0.76538 0.89485 0.92205 0.77773 0.93420 0.88395 0.91817 0.91007 0.91870 0.92443 0.89614 0.73465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.01 0.37 -0.25 16 2 C 0.17 1.55 6.78 -82.53 -0.56 0.99 16 3 C -0.19 -1.52 9.41 -39.50 -0.37 -1.89 16 4 C 0.01 0.12 5.95 -103.93 -0.62 -0.50 16 5 C -0.12 -0.98 9.69 36.01 0.35 -0.63 16 6 C -0.20 -2.48 5.66 -104.69 -0.59 -3.07 16 7 C 0.58 8.17 5.42 -12.47 -0.07 8.10 16 8 O -0.52 -9.59 16.71 5.28 0.09 -9.50 16 9 N -0.70 -8.76 4.80 -54.41 -0.26 -9.02 16 10 C 0.14 2.09 4.12 -67.48 -0.28 1.81 16 11 H 0.10 1.55 7.46 -51.93 -0.39 1.17 16 12 C -0.17 -2.99 7.68 -25.75 -0.20 -3.19 16 13 C 0.18 3.31 4.27 -67.48 -0.29 3.02 16 14 H 0.07 1.32 8.10 -51.93 -0.42 0.89 16 15 N -0.71 -16.67 5.30 -52.98 -0.28 -16.95 16 16 C -0.24 -6.49 9.97 -15.06 -0.15 -6.64 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.13 -1.89 0.92 -154.71 -0.14 -2.03 16 25 C -0.10 -1.59 7.15 -26.28 -0.19 -1.78 16 26 C -0.14 -1.78 8.08 -25.75 -0.21 -1.99 16 27 C -0.12 -1.61 7.62 -26.28 -0.20 -1.81 16 28 C 0.36 4.58 7.77 -16.61 -0.13 4.45 16 29 O -0.47 -6.00 13.01 -17.97 -0.23 -6.24 16 30 N -0.51 -6.14 10.28 -9.21 -0.09 -6.23 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.08 0.68 7.19 -51.93 -0.37 0.31 16 38 H 0.40 4.31 8.41 -40.82 -0.34 3.97 16 39 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.39 9.69 6.23 -40.82 -0.25 9.44 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.10 1.73 7.03 -51.93 -0.36 1.37 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.65 7.58 -51.93 -0.39 0.25 16 48 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.41 3.34 9.06 45.56 0.41 3.76 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -33.96 404.89 -9.09 -43.05 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.74 Total: 14.34 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -3.37 Total: -5.81 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.09 Total: -58.76 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.15 Total: -15.74 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.96 -9.09 -43.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078693067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.892 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds