Wall clock time and date at job start Wed Apr 1 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38359 * 119.40834 * 2 1 4 4 C 1.38333 * 119.45918 * 179.71666 * 3 2 1 5 5 C 1.50706 * 120.82689 * 180.25095 * 4 3 2 6 6 C 1.39988 * 118.34663 * 0.50546 * 4 3 2 7 7 C 1.47528 * 120.59547 * 179.78023 * 6 4 3 8 8 O 1.21596 * 119.99836 * 269.71765 * 7 6 4 9 9 N 1.34773 * 120.00211 * 89.71120 * 7 6 4 10 10 C 1.46508 * 119.99818 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.88574 * 23.66055 * 10 9 7 12 12 C 1.53948 * 113.66423 * 252.19151 * 10 9 7 13 13 C 1.53957 * 87.29686 * 270.26262 * 12 10 9 14 14 H 1.09002 * 113.65722 * 89.73762 * 13 12 10 15 15 N 1.46498 * 113.66407 * 220.79629 * 13 12 10 16 16 C 1.36932 * 119.99792 * 252.18888 * 15 13 12 17 17 H 1.08000 * 120.00566 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99800 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00122 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99829 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47346 * 89.99703 * 20 18 16 22 22 H 1.48504 * 109.46928 * 209.99602 * 20 18 16 23 23 H 1.48499 * 109.47327 * 329.99173 * 20 18 16 24 24 C 1.52909 * 113.65947 * 155.00224 * 10 9 7 25 25 C 1.52910 * 121.13680 * 215.29369 * 24 10 9 26 26 C 1.53949 * 86.78077 * 100.82535 * 25 24 10 27 27 C 1.52905 * 121.13655 * 323.86096 * 24 10 9 28 28 C 1.40277 * 118.80725 * 359.49800 * 6 4 3 29 29 O 1.35427 * 119.79774 * 180.23450 * 28 6 4 30 30 N 1.31876 * 119.40910 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47081 * 270.02041 * 1 2 3 32 32 H 1.09005 * 109.46727 * 30.02293 * 1 2 3 33 33 H 1.08995 * 109.47010 * 150.01845 * 1 2 3 34 34 H 1.07999 * 120.26956 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.47289 * 270.25578 * 5 4 3 36 36 H 1.09001 * 109.46642 * 30.25764 * 5 4 3 37 37 H 1.08995 * 109.46523 * 150.25232 * 5 4 3 38 38 H 0.96995 * 120.00175 * 0.02562 * 9 7 6 39 39 H 1.09001 * 113.57503 * 155.65942 * 12 10 9 40 40 H 1.08996 * 113.57974 * 24.86866 * 12 10 9 41 41 H 0.96998 * 119.99697 * 72.18259 * 15 13 12 42 42 H 0.96992 * 120.00080 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.66074 * 215.29190 * 25 24 10 44 44 H 1.08994 * 113.66448 * 346.35155 * 25 24 10 45 45 H 1.09009 * 113.57633 * 270.12923 * 26 25 24 46 46 H 1.09000 * 113.65567 * 139.34741 * 26 25 24 47 47 H 1.08990 * 113.66878 * 13.64950 * 27 24 10 48 48 H 1.09000 * 113.66430 * 144.61574 * 27 24 10 49 49 H 0.96696 * 114.00253 * 90.00085 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0060 5 6 4.3408 2.5014 0.0118 6 6 4.2355 -0.0249 0.0009 7 6 5.7097 -0.0814 0.0021 8 8 6.3180 -0.1051 -1.0506 9 7 6.3823 -0.1067 1.1697 10 6 7.8463 -0.1634 1.1707 11 1 8.2860 0.2222 0.2510 12 6 8.4114 -1.5285 1.6033 13 6 8.3955 -0.9956 3.0476 14 1 7.4606 -1.1874 3.5742 15 7 9.5777 -1.3723 3.8264 16 6 9.4735 -2.3104 4.8185 17 1 8.5198 -2.7723 5.0271 18 6 10.5936 -2.6670 5.5569 19 7 11.7558 -2.1038 5.3031 20 14 10.4517 -3.9473 6.9097 21 1 10.7025 -5.2966 6.3427 22 1 11.4527 -3.6614 7.9687 23 1 9.0870 -3.9015 7.4934 24 6 8.4815 0.4051 2.4401 25 6 9.8077 1.1645 2.3887 26 6 8.9723 2.4549 2.4726 27 6 7.8766 1.6147 3.1535 28 6 3.4758 -1.2041 0.0009 29 8 4.0992 -2.4063 0.0009 30 7 2.1546 -1.1488 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6412 2.1376 -0.0004 35 1 4.5272 2.8179 -1.0144 36 1 3.7618 3.2667 0.5287 37 1 5.2911 2.3559 0.5255 38 1 5.8971 -0.0881 2.0094 39 1 9.4135 -1.7260 1.2224 40 1 7.7238 -2.3577 1.4368 41 1 10.4342 -0.9573 3.6393 42 1 12.5385 -2.3533 5.8188 43 1 10.4419 0.9967 3.2592 44 1 10.3415 1.0495 1.4454 45 1 8.6786 2.8482 1.4993 46 1 9.4059 3.2151 3.1225 47 1 6.8678 1.8593 2.8211 48 1 7.9667 1.5727 4.2389 49 1 4.2802 -2.7555 0.8843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078693067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:33 Heat of formation + Delta-G solvation = -14.021315 kcal Electronic energy + Delta-G solvation = -30869.205241 eV Core-core repulsion = 26797.061929 eV Total energy + Delta-G solvation = -4072.143311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.27422 -41.59219 -39.83655 -38.46252 -36.46055 -35.75736 -35.28921 -33.83399 -32.78565 -31.67808 -29.45849 -28.45296 -26.73381 -26.56638 -25.41864 -24.77814 -23.85048 -22.82537 -21.88951 -21.35202 -19.60543 -19.54055 -19.29412 -18.45406 -18.22390 -17.30839 -16.88923 -16.64342 -16.35471 -16.22220 -15.60288 -15.42804 -15.36232 -15.11431 -14.81325 -14.26503 -14.20381 -14.04701 -13.93283 -13.90780 -13.47165 -13.36276 -13.24198 -13.18205 -12.99034 -12.84848 -12.81157 -12.73025 -12.62131 -12.59100 -12.17718 -11.99944 -11.82744 -11.48406 -11.35500 -11.13167 -10.85985 -10.66285 -10.61639 -10.51603 -10.06835 -9.86252 -8.94890 -7.93714 -5.20994 -0.30405 0.03603 1.34909 1.47372 1.48667 1.56414 1.92164 2.34719 2.53819 2.56544 3.37222 3.38920 3.42962 3.55775 3.58707 3.67675 3.76680 3.92346 3.99355 4.00574 4.15128 4.20077 4.28247 4.30596 4.51330 4.56728 4.59786 4.62082 4.66675 4.71409 4.82414 4.82458 4.95299 4.96729 4.97853 5.02515 5.07938 5.11385 5.12534 5.14725 5.19881 5.21131 5.48506 5.51016 5.52550 5.60845 5.66250 6.28381 6.36317 6.43711 6.80475 7.04705 7.35491 8.13072 8.36018 9.29510 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.002893 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.840844 B = 9675.971678 C =10784.997377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.175 4.175 4 C 0.010 3.990 5 C -0.124 4.124 6 C -0.222 4.222 7 C 0.586 3.414 8 O -0.571 6.571 9 N -0.681 5.681 10 C 0.162 3.838 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.169 3.831 14 H 0.080 0.920 15 N -0.720 5.720 16 C -0.240 4.240 17 H 0.077 0.923 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.968 3.032 21 H -0.292 1.292 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.114 4.114 28 C 0.340 3.660 29 O -0.493 6.493 30 N -0.532 5.532 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.185 0.815 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.145 13.596 -8.757 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.023 3.977 3 C -0.194 4.194 4 C 0.003 3.997 5 C -0.180 4.180 6 C -0.229 4.229 7 C 0.372 3.628 8 O -0.449 6.449 9 N -0.331 5.331 10 C 0.056 3.944 11 H 0.108 0.892 12 C -0.216 4.216 13 C 0.059 3.941 14 H 0.098 0.902 15 N -0.358 5.358 16 C -0.372 4.372 17 H 0.095 0.905 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.798 3.202 21 H -0.219 1.219 22 H -0.225 1.225 23 H -0.192 1.192 24 C -0.117 4.117 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.151 4.151 28 C 0.161 3.839 29 O -0.303 6.303 30 N -0.253 5.253 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.203 0.797 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.249 0.751 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.210 0.790 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -23.207 12.683 -9.928 28.248 hybrid contribution 1.497 -0.809 1.399 2.203 sum -21.710 11.874 -8.529 26.174 Atomic orbital electron populations 1.20936 0.85594 1.04920 1.04760 1.21911 0.98688 0.86814 0.90294 1.22185 0.92890 1.00787 1.03580 1.20596 0.94661 0.93848 0.90644 1.21024 1.00002 0.92823 1.04125 1.20761 0.93469 0.95316 1.13329 1.17987 0.86645 0.74649 0.83536 1.90795 1.70212 1.51033 1.32883 1.45469 1.06131 1.73160 1.08301 1.21207 0.79483 0.96345 0.97391 0.89215 1.24164 1.00210 0.96674 1.00510 1.21667 0.90506 0.92763 0.89194 0.90197 1.42518 1.07363 1.46926 1.38968 1.19676 0.94781 1.13938 1.08782 0.90532 1.25500 0.95546 1.02813 1.02803 1.69802 0.99772 1.47681 1.44672 0.85216 0.77289 0.78813 0.78909 1.21933 1.22451 1.19227 1.23275 0.98385 0.94769 0.95279 1.22454 0.95000 0.96296 1.01521 1.22769 0.96501 0.95623 1.01234 1.22585 0.98910 0.94204 0.99414 1.19150 0.86867 0.84469 0.93461 1.84710 1.76845 1.33144 1.35635 1.67107 1.08782 1.32176 1.17240 0.88339 0.87366 0.90968 0.79728 0.89595 0.86844 0.91656 0.75116 0.91405 0.92247 0.79013 0.94134 0.91225 0.91790 0.89248 0.90870 0.89749 0.90677 0.72029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.16 71.24 0.72 -0.13 16 2 C 0.16 2.54 6.78 42.58 0.29 2.83 16 3 C -0.18 -2.16 9.41 22.32 0.21 -1.95 16 4 C 0.01 0.18 5.95 -19.42 -0.12 0.06 16 5 C -0.12 -1.52 9.69 71.24 0.69 -0.83 16 6 C -0.22 -5.23 5.66 -19.91 -0.11 -5.34 16 7 C 0.59 16.28 5.42 86.69 0.47 16.75 16 8 O -0.57 -20.99 16.71 -4.02 -0.07 -21.06 16 9 N -0.68 -16.45 4.80 -444.31 -2.13 -18.58 16 10 C 0.16 4.71 4.12 45.28 0.19 4.89 16 11 H 0.09 2.85 7.46 -2.39 -0.02 2.84 16 12 C -0.17 -6.08 7.68 31.23 0.24 -5.84 16 13 C 0.17 6.21 4.27 45.29 0.19 6.41 16 14 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 15 N -0.72 -34.74 5.30 -321.54 -1.70 -36.44 16 16 C -0.24 -12.88 9.97 84.04 0.84 -12.04 16 17 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 20 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C -0.11 -3.39 0.92 -52.31 -0.05 -3.44 16 25 C -0.11 -3.51 7.15 30.88 0.22 -3.29 16 26 C -0.12 -2.90 8.08 31.23 0.25 -2.65 16 27 C -0.11 -2.75 7.62 30.88 0.24 -2.52 16 28 C 0.34 8.58 7.77 85.13 0.66 9.24 16 29 O -0.49 -12.83 13.01 -87.23 -1.14 -13.96 16 30 N -0.53 -12.36 10.28 -296.06 -3.04 -15.40 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.28 8.07 -2.38 -0.02 0.26 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 0.65 8.10 -2.39 -0.02 0.63 16 37 H 0.06 0.97 7.19 -2.39 -0.02 0.95 16 38 H 0.41 8.17 8.41 -92.71 -0.78 7.39 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.38 19.63 6.23 -92.71 -0.58 19.06 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.07 2.56 7.03 -2.38 -0.02 2.55 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.42 7.19 9.06 -74.06 -0.67 6.52 16 Total: -1.00 -76.35 404.89 -1.40 -77.75 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -1.03 Total: 39.89 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.40 Total: -1.57 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -6.60 Total: -128.59 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.20 Total: -35.02 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.35 -1.40 -77.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078693067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.731 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds