Wall clock time and date at job start Wed Apr 1 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.40650 * 2 1 4 4 C 1.38333 * 119.45825 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.82544 * 180.02562 * 4 3 2 6 6 C 1.39996 * 118.34853 * 0.02562 * 4 3 2 7 7 C 1.47521 * 120.59265 * 180.02562 * 6 4 3 8 8 O 1.21585 * 120.00315 * 90.00342 * 7 6 4 9 9 N 1.34777 * 119.99623 * 269.99591 * 7 6 4 10 10 C 1.46498 * 119.99821 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.88810 * 336.34656 * 10 9 7 12 12 C 1.53952 * 113.74849 * 107.77135 * 10 9 7 13 13 C 1.53954 * 87.29718 * 139.21662 * 12 10 9 14 14 H 1.09002 * 113.74607 * 89.75069 * 13 12 10 15 15 N 1.46498 * 113.66167 * 220.79713 * 13 12 10 16 16 C 1.36943 * 119.99752 * 251.90877 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.52909 * 86.78194 * 335.27068 * 13 12 10 25 25 C 1.52916 * 121.13545 * 259.17990 * 24 13 12 26 26 C 1.53944 * 86.78375 * 209.37932 * 25 24 13 27 27 C 1.52903 * 121.13947 * 150.62172 * 24 13 12 28 28 C 1.40277 * 118.80561 * 0.27375 * 6 4 3 29 29 O 1.35425 * 119.79987 * 179.70449 * 28 6 4 30 30 N 1.31886 * 119.40517 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47343 * 90.00251 * 1 2 3 32 32 H 1.09007 * 109.47172 * 209.99814 * 1 2 3 33 33 H 1.09000 * 109.47418 * 329.99781 * 1 2 3 34 34 H 1.08001 * 120.26827 * 0.02562 * 3 2 1 35 35 H 1.09012 * 109.46761 * 269.97791 * 5 4 3 36 36 H 1.08999 * 109.47177 * 29.97638 * 5 4 3 37 37 H 1.08996 * 109.47385 * 149.98318 * 5 4 3 38 38 H 0.97001 * 120.00637 * 0.02562 * 9 7 6 39 39 H 1.09000 * 113.57696 * 24.61802 * 12 10 9 40 40 H 1.08997 * 113.58404 * 253.82326 * 12 10 9 41 41 H 0.97001 * 120.00384 * 72.19233 * 15 13 12 42 42 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.09003 * 113.66006 * 323.85283 * 25 24 13 44 44 H 1.09000 * 113.66434 * 94.90668 * 25 24 13 45 45 H 1.08999 * 113.58449 * 270.13378 * 26 25 24 46 46 H 1.08998 * 113.65291 * 139.34532 * 26 25 24 47 47 H 1.09002 * 113.66292 * 265.08700 * 27 24 13 48 48 H 1.09002 * 113.66630 * 36.13814 * 27 24 13 49 49 H 0.96696 * 113.99878 * 89.99772 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3407 2.5013 0.0011 6 6 4.2356 -0.0249 0.0005 7 6 5.7097 -0.0814 0.0016 8 8 6.3164 -0.1051 1.0550 9 7 6.3839 -0.1067 -1.1651 10 6 7.8478 -0.1633 -1.1640 11 1 8.2863 0.2223 -0.2437 12 6 8.4158 -1.5279 -1.5945 13 6 9.4838 -0.7517 -2.3864 14 1 10.3827 -0.5308 -1.8109 15 7 9.7761 -1.3288 -3.7008 16 6 10.9657 -1.9719 -3.9169 17 1 11.6864 -2.0575 -3.1171 18 6 11.2452 -2.5137 -5.1640 19 7 10.3671 -2.4088 -6.1389 20 14 12.8675 -3.3915 -5.4586 21 1 12.9808 -4.5465 -4.5322 22 1 12.9212 -3.8747 -6.8618 23 1 13.9906 -2.4506 -5.2164 24 6 8.4850 0.4052 -2.4325 25 6 7.6486 0.6784 -3.6832 26 6 7.6567 2.1584 -3.2596 27 6 8.9594 1.8573 -2.4965 28 6 3.4758 -1.2041 -0.0059 29 8 4.0992 -2.4064 -0.0121 30 7 2.1546 -1.1490 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6411 2.1375 0.0004 35 1 4.5274 2.8135 -1.0265 36 1 3.7616 3.2689 0.5145 37 1 5.2909 2.3582 0.5155 38 1 5.9000 -0.0875 -2.0055 39 1 7.7378 -2.1031 -2.2251 40 1 8.8233 -2.1108 -0.7686 41 1 9.1289 -1.2518 -4.4192 42 1 10.5623 -2.7878 -7.0102 43 1 8.1803 0.4872 -4.6153 44 1 6.6596 0.2212 -3.6566 45 1 6.8243 2.4309 -2.6108 46 1 7.7886 2.8505 -4.0913 47 1 9.0174 2.3420 -1.5219 48 1 9.8595 1.9976 -3.0950 49 1 4.2800 -2.7601 0.8694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078693068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:39 Heat of formation + Delta-G solvation = 10.989928 kcal Electronic energy + Delta-G solvation = -30867.759066 eV Core-core repulsion = 26796.700323 eV Total energy + Delta-G solvation = -4071.058742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25525 -40.45304 -38.66700 -37.58232 -34.93759 -34.51490 -34.08449 -32.50848 -32.01391 -29.90767 -28.66111 -27.86576 -25.54422 -24.81291 -24.17901 -23.63127 -22.57001 -21.65211 -20.44673 -20.39538 -18.67405 -18.50944 -17.52726 -17.41383 -16.92578 -16.30347 -15.79985 -15.35094 -15.19555 -14.71272 -14.50094 -14.37896 -14.23336 -13.91607 -13.66107 -13.34217 -13.29378 -13.03417 -12.86868 -12.73593 -12.47013 -12.30815 -12.19049 -12.11433 -11.89082 -11.87553 -11.52442 -11.31599 -11.02309 -10.80758 -10.74686 -10.37391 -10.24126 -10.11559 -9.95351 -9.87758 -9.74679 -9.59355 -9.41255 -9.10307 -8.82256 -8.74240 -6.96600 -5.79794 -3.08070 0.48167 0.77997 2.47641 3.01037 3.13523 3.43205 3.45196 3.48065 3.48763 4.14253 4.18413 4.51947 4.59132 4.65556 4.72475 4.85943 4.88319 4.96092 5.00152 5.04437 5.12354 5.18497 5.20399 5.24767 5.25894 5.43968 5.47776 5.60240 5.62276 5.68629 5.78218 5.82981 5.87488 5.99256 6.01181 6.11127 6.13099 6.13946 6.23539 6.30978 6.37742 6.52672 6.61359 6.74332 6.89892 7.06286 7.18770 7.53926 7.58315 7.68925 8.16332 8.39138 9.50582 10.07710 10.42598 11.42535 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002660 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.307756 B =10523.633033 C =11100.679365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.188 4.188 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.202 4.202 7 C 0.576 3.424 8 O -0.538 6.538 9 N -0.696 5.696 10 C 0.143 3.857 11 H 0.112 0.888 12 C -0.173 4.173 13 C 0.182 3.818 14 H 0.081 0.919 15 N -0.706 5.706 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.125 4.125 25 C -0.108 4.108 26 C -0.140 4.140 27 C -0.121 4.121 28 C 0.357 3.643 29 O -0.473 6.473 30 N -0.506 5.506 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.086 0.914 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.845 11.553 12.557 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.208 4.208 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.209 4.209 7 C 0.360 3.640 8 O -0.416 6.416 9 N -0.345 5.345 10 C 0.038 3.962 11 H 0.130 0.870 12 C -0.215 4.215 13 C 0.069 3.931 14 H 0.098 0.902 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.127 4.127 25 C -0.146 4.146 26 C -0.177 4.177 27 C -0.158 4.158 28 C 0.177 3.823 29 O -0.281 6.281 30 N -0.227 5.227 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -18.622 10.678 12.662 24.923 hybrid contribution 0.859 -0.051 -0.397 0.948 sum -17.763 10.627 12.264 24.060 Atomic orbital electron populations 1.20803 0.88150 1.03855 1.03604 1.21185 0.96993 0.87085 0.91828 1.21771 0.93626 0.99605 1.05806 1.20266 0.93665 0.94190 0.91544 1.20956 1.00507 0.93038 1.03676 1.20962 0.95274 0.94092 1.10546 1.17752 0.85775 0.75990 0.84477 1.90803 1.69305 1.50296 1.31195 1.46027 1.07815 1.72726 1.07918 1.22241 0.77586 0.98494 0.97862 0.87007 1.24291 1.00725 0.95794 1.00715 1.21141 0.93253 0.90156 0.88551 0.90151 1.42310 1.19662 1.64649 1.07756 1.19261 0.94395 1.27871 0.95885 0.91110 1.24744 0.98337 1.01600 0.96112 1.69644 1.35150 1.50582 1.02714 0.86267 0.83448 0.79591 0.76872 1.21236 1.21735 1.21258 1.23495 0.98576 0.95895 0.94751 1.22453 0.98830 0.95104 0.98225 1.22830 0.98084 0.96982 0.99811 1.22672 0.97707 0.95440 1.00005 1.19036 0.86317 0.84596 0.92368 1.84726 1.76563 1.32463 1.34325 1.67071 1.09169 1.30410 1.16016 0.89823 0.90109 0.90229 0.83834 0.89600 0.90150 0.90357 0.76337 0.90061 0.92062 0.77867 0.93424 0.88303 0.92605 0.91192 0.91851 0.92117 0.89508 0.73389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 2 C 0.17 1.57 6.78 -82.52 -0.56 1.01 16 3 C -0.19 -1.55 9.41 -39.50 -0.37 -1.92 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -1.00 9.69 36.00 0.35 -0.65 16 6 C -0.20 -2.52 5.66 -104.69 -0.59 -3.11 16 7 C 0.58 8.22 5.42 -12.48 -0.07 8.15 16 8 O -0.54 -9.29 16.70 5.29 0.09 -9.21 16 9 N -0.70 -9.51 5.28 -54.42 -0.29 -9.79 16 10 C 0.14 2.16 4.12 -67.48 -0.28 1.89 16 11 H 0.11 1.75 7.46 -51.93 -0.39 1.37 16 12 C -0.17 -3.08 7.69 -25.75 -0.20 -3.28 16 13 C 0.18 3.51 4.36 -67.48 -0.29 3.22 16 14 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 15 N -0.71 -17.04 5.30 -52.99 -0.28 -17.32 16 16 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.12 -1.94 1.06 -154.71 -0.16 -2.10 16 25 C -0.11 -1.63 6.77 -26.28 -0.18 -1.81 16 26 C -0.14 -1.75 8.08 -25.75 -0.21 -1.96 16 27 C -0.12 -1.69 7.84 -26.28 -0.21 -1.90 16 28 C 0.36 4.61 7.77 -16.61 -0.13 4.49 16 29 O -0.47 -6.05 13.01 -17.97 -0.23 -6.28 16 30 N -0.51 -6.21 10.28 -9.21 -0.09 -6.31 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.08 0.77 7.19 -51.93 -0.37 0.39 16 38 H 0.40 5.15 6.71 -40.82 -0.27 4.88 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.39 9.81 6.23 -40.82 -0.25 9.56 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.10 1.76 7.03 -51.93 -0.36 1.39 16 44 H 0.06 0.78 6.42 -51.93 -0.33 0.44 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.41 3.56 9.06 45.56 0.41 3.97 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -33.40 402.58 -9.05 -42.44 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.61 Total: 16.05 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.40 Total: -5.93 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.06 Total: -60.34 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.15 Total: -15.49 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.40 -9.05 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078693068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.433 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds