Wall clock time and date at job start Wed Apr 1 2020 04:52:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38356 * 119.40650 * 2 1
4 4 C 1.38333 * 119.45825 * 179.97438 * 3 2 1
5 5 C 1.50697 * 120.82544 * 180.02562 * 4 3 2
6 6 C 1.39996 * 118.34853 * 0.02562 * 4 3 2
7 7 C 1.47521 * 120.59265 * 180.02562 * 6 4 3
8 8 O 1.21585 * 120.00315 * 90.00342 * 7 6 4
9 9 N 1.34777 * 119.99623 * 269.99591 * 7 6 4
10 10 C 1.46498 * 119.99821 * 180.02562 * 9 7 6
11 11 H 1.08997 * 112.88810 * 336.34656 * 10 9 7
12 12 C 1.53952 * 113.74849 * 107.77135 * 10 9 7
13 13 C 1.53954 * 87.29718 * 139.21662 * 12 10 9
14 14 H 1.09002 * 113.74607 * 89.75069 * 13 12 10
15 15 N 1.46498 * 113.66167 * 220.79713 * 13 12 10
16 16 C 1.36943 * 119.99752 * 251.90877 * 15 13 12
17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13
18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13
19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15
20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16
22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16
23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16
24 24 C 1.52909 * 86.78194 * 335.27068 * 13 12 10
25 25 C 1.52916 * 121.13545 * 259.17990 * 24 13 12
26 26 C 1.53944 * 86.78375 * 209.37932 * 25 24 13
27 27 C 1.52903 * 121.13947 * 150.62172 * 24 13 12
28 28 C 1.40277 * 118.80561 * 0.27375 * 6 4 3
29 29 O 1.35425 * 119.79987 * 179.70449 * 28 6 4
30 30 N 1.31886 * 119.40517 * 179.97438 * 2 1 3
31 31 H 1.08997 * 109.47343 * 90.00251 * 1 2 3
32 32 H 1.09007 * 109.47172 * 209.99814 * 1 2 3
33 33 H 1.09000 * 109.47418 * 329.99781 * 1 2 3
34 34 H 1.08001 * 120.26827 * 0.02562 * 3 2 1
35 35 H 1.09012 * 109.46761 * 269.97791 * 5 4 3
36 36 H 1.08999 * 109.47177 * 29.97638 * 5 4 3
37 37 H 1.08996 * 109.47385 * 149.98318 * 5 4 3
38 38 H 0.97001 * 120.00637 * 0.02562 * 9 7 6
39 39 H 1.09000 * 113.57696 * 24.61802 * 12 10 9
40 40 H 1.08997 * 113.58404 * 253.82326 * 12 10 9
41 41 H 0.97001 * 120.00384 * 72.19233 * 15 13 12
42 42 H 0.96999 * 119.99739 * 180.02562 * 19 18 16
43 43 H 1.09003 * 113.66006 * 323.85283 * 25 24 13
44 44 H 1.09000 * 113.66434 * 94.90668 * 25 24 13
45 45 H 1.08999 * 113.58449 * 270.13378 * 26 25 24
46 46 H 1.08998 * 113.65291 * 139.34532 * 26 25 24
47 47 H 1.09002 * 113.66292 * 265.08700 * 27 24 13
48 48 H 1.09002 * 113.66630 * 36.13814 * 27 24 13
49 49 H 0.96696 * 113.99878 * 89.99772 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2053 0.0000
4 6 3.5697 1.2065 0.0005
5 6 4.3407 2.5013 0.0011
6 6 4.2356 -0.0249 0.0005
7 6 5.7097 -0.0814 0.0016
8 8 6.3164 -0.1051 1.0550
9 7 6.3839 -0.1067 -1.1651
10 6 7.8478 -0.1633 -1.1640
11 1 8.2863 0.2223 -0.2437
12 6 8.4158 -1.5279 -1.5945
13 6 9.4838 -0.7517 -2.3864
14 1 10.3827 -0.5308 -1.8109
15 7 9.7761 -1.3288 -3.7008
16 6 10.9657 -1.9719 -3.9169
17 1 11.6864 -2.0575 -3.1171
18 6 11.2452 -2.5137 -5.1640
19 7 10.3671 -2.4088 -6.1389
20 14 12.8675 -3.3915 -5.4586
21 1 12.9808 -4.5465 -4.5322
22 1 12.9212 -3.8747 -6.8618
23 1 13.9906 -2.4506 -5.2164
24 6 8.4850 0.4052 -2.4325
25 6 7.6486 0.6784 -3.6832
26 6 7.6567 2.1584 -3.2596
27 6 8.9594 1.8573 -2.4965
28 6 3.4758 -1.2041 -0.0059
29 8 4.0992 -2.4064 -0.0121
30 7 2.1546 -1.1490 0.0005
31 1 -0.3634 0.0000 -1.0276
32 1 -0.3634 -0.8901 0.5138
33 1 -0.3634 0.8899 0.5139
34 1 1.6411 2.1375 0.0004
35 1 4.5274 2.8135 -1.0265
36 1 3.7616 3.2689 0.5145
37 1 5.2909 2.3582 0.5155
38 1 5.9000 -0.0875 -2.0055
39 1 7.7378 -2.1031 -2.2251
40 1 8.8233 -2.1108 -0.7686
41 1 9.1289 -1.2518 -4.4192
42 1 10.5623 -2.7878 -7.0102
43 1 8.1803 0.4872 -4.6153
44 1 6.6596 0.2212 -3.6566
45 1 6.8243 2.4309 -2.6108
46 1 7.7886 2.8505 -4.0913
47 1 9.0174 2.3420 -1.5219
48 1 9.8595 1.9976 -3.0950
49 1 4.2800 -2.7601 0.8694
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001078693068.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:39
Heat of formation + Delta-G solvation = 10.989928 kcal
Electronic energy + Delta-G solvation = -30867.759066 eV
Core-core repulsion = 26796.700323 eV
Total energy + Delta-G solvation = -4071.058742 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.25525 -40.45304 -38.66700 -37.58232 -34.93759 -34.51490 -34.08449 -32.50848
-32.01391 -29.90767 -28.66111 -27.86576 -25.54422 -24.81291 -24.17901 -23.63127
-22.57001 -21.65211 -20.44673 -20.39538 -18.67405 -18.50944 -17.52726 -17.41383
-16.92578 -16.30347 -15.79985 -15.35094 -15.19555 -14.71272 -14.50094 -14.37896
-14.23336 -13.91607 -13.66107 -13.34217 -13.29378 -13.03417 -12.86868 -12.73593
-12.47013 -12.30815 -12.19049 -12.11433 -11.89082 -11.87553 -11.52442 -11.31599
-11.02309 -10.80758 -10.74686 -10.37391 -10.24126 -10.11559 -9.95351 -9.87758
-9.74679 -9.59355 -9.41255 -9.10307 -8.82256 -8.74240 -6.96600 -5.79794
-3.08070 0.48167 0.77997 2.47641 3.01037 3.13523 3.43205 3.45196
3.48065 3.48763 4.14253 4.18413 4.51947 4.59132 4.65556 4.72475
4.85943 4.88319 4.96092 5.00152 5.04437 5.12354 5.18497 5.20399
5.24767 5.25894 5.43968 5.47776 5.60240 5.62276 5.68629 5.78218
5.82981 5.87488 5.99256 6.01181 6.11127 6.13099 6.13946 6.23539
6.30978 6.37742 6.52672 6.61359 6.74332 6.89892 7.06286 7.18770
7.53926 7.58315 7.68925 8.16332 8.39138 9.50582 10.07710 10.42598
11.42535
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016512 B = 0.002660 C = 0.002522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.307756 B =10523.633033 C =11100.679365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.167 3.833
3 C -0.188 4.188
4 C 0.011 3.989
5 C -0.125 4.125
6 C -0.202 4.202
7 C 0.576 3.424
8 O -0.538 6.538
9 N -0.696 5.696
10 C 0.143 3.857
11 H 0.112 0.888
12 C -0.173 4.173
13 C 0.182 3.818
14 H 0.081 0.919
15 N -0.706 5.706
16 C -0.243 4.243
17 H 0.071 0.929
18 C -0.012 4.012
19 N -0.933 5.933
20 Si 0.907 3.093
21 H -0.286 1.286
22 H -0.291 1.291
23 H -0.286 1.286
24 C -0.125 4.125
25 C -0.108 4.108
26 C -0.140 4.140
27 C -0.121 4.121
28 C 0.357 3.643
29 O -0.473 6.473
30 N -0.506 5.506
31 H 0.083 0.917
32 H 0.080 0.920
33 H 0.079 0.921
34 H 0.144 0.856
35 H 0.085 0.915
36 H 0.080 0.920
37 H 0.078 0.922
38 H 0.401 0.599
39 H 0.081 0.919
40 H 0.061 0.939
41 H 0.386 0.614
42 H 0.256 0.744
43 H 0.099 0.901
44 H 0.055 0.945
45 H 0.069 0.931
46 H 0.063 0.937
47 H 0.060 0.940
48 H 0.086 0.914
49 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.845 11.553 12.557 25.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.029 3.971
3 C -0.208 4.208
4 C 0.003 3.997
5 C -0.182 4.182
6 C -0.209 4.209
7 C 0.360 3.640
8 O -0.416 6.416
9 N -0.345 5.345
10 C 0.038 3.962
11 H 0.130 0.870
12 C -0.215 4.215
13 C 0.069 3.931
14 H 0.098 0.902
15 N -0.344 5.344
16 C -0.374 4.374
17 H 0.089 0.911
18 C -0.208 4.208
19 N -0.581 5.581
20 Si 0.738 3.262
21 H -0.212 1.212
22 H -0.217 1.217
23 H -0.213 1.213
24 C -0.127 4.127
25 C -0.146 4.146
26 C -0.177 4.177
27 C -0.158 4.158
28 C 0.177 3.823
29 O -0.281 6.281
30 N -0.227 5.227
31 H 0.102 0.898
32 H 0.099 0.901
33 H 0.098 0.902
34 H 0.162 0.838
35 H 0.104 0.896
36 H 0.099 0.901
37 H 0.096 0.904
38 H 0.237 0.763
39 H 0.099 0.901
40 H 0.079 0.921
41 H 0.221 0.779
42 H 0.066 0.934
43 H 0.117 0.883
44 H 0.074 0.926
45 H 0.088 0.912
46 H 0.081 0.919
47 H 0.079 0.921
48 H 0.105 0.895
49 H 0.266 0.734
Dipole moment (debyes) X Y Z Total
from point charges -18.622 10.678 12.662 24.923
hybrid contribution 0.859 -0.051 -0.397 0.948
sum -17.763 10.627 12.264 24.060
Atomic orbital electron populations
1.20803 0.88150 1.03855 1.03604 1.21185 0.96993 0.87085 0.91828
1.21771 0.93626 0.99605 1.05806 1.20266 0.93665 0.94190 0.91544
1.20956 1.00507 0.93038 1.03676 1.20962 0.95274 0.94092 1.10546
1.17752 0.85775 0.75990 0.84477 1.90803 1.69305 1.50296 1.31195
1.46027 1.07815 1.72726 1.07918 1.22241 0.77586 0.98494 0.97862
0.87007 1.24291 1.00725 0.95794 1.00715 1.21141 0.93253 0.90156
0.88551 0.90151 1.42310 1.19662 1.64649 1.07756 1.19261 0.94395
1.27871 0.95885 0.91110 1.24744 0.98337 1.01600 0.96112 1.69644
1.35150 1.50582 1.02714 0.86267 0.83448 0.79591 0.76872 1.21236
1.21735 1.21258 1.23495 0.98576 0.95895 0.94751 1.22453 0.98830
0.95104 0.98225 1.22830 0.98084 0.96982 0.99811 1.22672 0.97707
0.95440 1.00005 1.19036 0.86317 0.84596 0.92368 1.84726 1.76563
1.32463 1.34325 1.67071 1.09169 1.30410 1.16016 0.89823 0.90109
0.90229 0.83834 0.89600 0.90150 0.90357 0.76337 0.90061 0.92062
0.77867 0.93424 0.88303 0.92605 0.91192 0.91851 0.92117 0.89508
0.73389
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16
2 C 0.17 1.57 6.78 -82.52 -0.56 1.01 16
3 C -0.19 -1.55 9.41 -39.50 -0.37 -1.92 16
4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16
5 C -0.13 -1.00 9.69 36.00 0.35 -0.65 16
6 C -0.20 -2.52 5.66 -104.69 -0.59 -3.11 16
7 C 0.58 8.22 5.42 -12.48 -0.07 8.15 16
8 O -0.54 -9.29 16.70 5.29 0.09 -9.21 16
9 N -0.70 -9.51 5.28 -54.42 -0.29 -9.79 16
10 C 0.14 2.16 4.12 -67.48 -0.28 1.89 16
11 H 0.11 1.75 7.46 -51.93 -0.39 1.37 16
12 C -0.17 -3.08 7.69 -25.75 -0.20 -3.28 16
13 C 0.18 3.51 4.36 -67.48 -0.29 3.22 16
14 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16
15 N -0.71 -17.04 5.30 -52.99 -0.28 -17.32 16
16 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16
17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16
19 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16
20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16
21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
24 C -0.12 -1.94 1.06 -154.71 -0.16 -2.10 16
25 C -0.11 -1.63 6.77 -26.28 -0.18 -1.81 16
26 C -0.14 -1.75 8.08 -25.75 -0.21 -1.96 16
27 C -0.12 -1.69 7.84 -26.28 -0.21 -1.90 16
28 C 0.36 4.61 7.77 -16.61 -0.13 4.49 16
29 O -0.47 -6.05 13.01 -17.97 -0.23 -6.28 16
30 N -0.51 -6.21 10.28 -9.21 -0.09 -6.31 16
31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16
34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16
35 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16
36 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16
37 H 0.08 0.77 7.19 -51.93 -0.37 0.39 16
38 H 0.40 5.15 6.71 -40.82 -0.27 4.88 16
39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16
40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
41 H 0.39 9.81 6.23 -40.82 -0.25 9.56 16
42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
43 H 0.10 1.76 7.03 -51.93 -0.36 1.39 16
44 H 0.06 0.78 6.42 -51.93 -0.33 0.44 16
45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
49 H 0.41 3.56 9.06 45.56 0.41 3.97 16
LS Contribution 402.58 15.07 6.07 6.07
Total: -1.00 -33.40 402.58 -9.05 -42.44
By element:
Atomic # 1 Polarization: 22.66 SS G_CDS: -6.61 Total: 16.05 kcal
Atomic # 6 Polarization: -2.53 SS G_CDS: -3.40 Total: -5.93 kcal
Atomic # 7 Polarization: -60.40 SS G_CDS: 0.06 Total: -60.34 kcal
Atomic # 8 Polarization: -15.34 SS G_CDS: -0.15 Total: -15.49 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -33.40 -9.05 -42.44 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078693068.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.433 kcal
(2) G-P(sol) polarization free energy of solvation -33.397 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds