Wall clock time and date at job start Wed Apr 1 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.40650 * 2 1 4 4 C 1.38333 * 119.45825 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.82544 * 180.02562 * 4 3 2 6 6 C 1.39996 * 118.34853 * 0.02562 * 4 3 2 7 7 C 1.47521 * 120.59265 * 180.02562 * 6 4 3 8 8 O 1.21585 * 120.00315 * 90.00342 * 7 6 4 9 9 N 1.34777 * 119.99623 * 269.99591 * 7 6 4 10 10 C 1.46498 * 119.99821 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.88810 * 336.34656 * 10 9 7 12 12 C 1.53952 * 113.74849 * 107.77135 * 10 9 7 13 13 C 1.53954 * 87.29718 * 139.21662 * 12 10 9 14 14 H 1.09002 * 113.74607 * 89.75069 * 13 12 10 15 15 N 1.46498 * 113.66167 * 220.79713 * 13 12 10 16 16 C 1.36943 * 119.99752 * 251.90877 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.52909 * 86.78194 * 335.27068 * 13 12 10 25 25 C 1.52916 * 121.13545 * 259.17990 * 24 13 12 26 26 C 1.53944 * 86.78375 * 209.37932 * 25 24 13 27 27 C 1.52903 * 121.13947 * 150.62172 * 24 13 12 28 28 C 1.40277 * 118.80561 * 0.27375 * 6 4 3 29 29 O 1.35425 * 119.79987 * 179.70449 * 28 6 4 30 30 N 1.31886 * 119.40517 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47343 * 90.00251 * 1 2 3 32 32 H 1.09007 * 109.47172 * 209.99814 * 1 2 3 33 33 H 1.09000 * 109.47418 * 329.99781 * 1 2 3 34 34 H 1.08001 * 120.26827 * 0.02562 * 3 2 1 35 35 H 1.09012 * 109.46761 * 269.97791 * 5 4 3 36 36 H 1.08999 * 109.47177 * 29.97638 * 5 4 3 37 37 H 1.08996 * 109.47385 * 149.98318 * 5 4 3 38 38 H 0.97001 * 120.00637 * 0.02562 * 9 7 6 39 39 H 1.09000 * 113.57696 * 24.61802 * 12 10 9 40 40 H 1.08997 * 113.58404 * 253.82326 * 12 10 9 41 41 H 0.97001 * 120.00384 * 72.19233 * 15 13 12 42 42 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.09003 * 113.66006 * 323.85283 * 25 24 13 44 44 H 1.09000 * 113.66434 * 94.90668 * 25 24 13 45 45 H 1.08999 * 113.58449 * 270.13378 * 26 25 24 46 46 H 1.08998 * 113.65291 * 139.34532 * 26 25 24 47 47 H 1.09002 * 113.66292 * 265.08700 * 27 24 13 48 48 H 1.09002 * 113.66630 * 36.13814 * 27 24 13 49 49 H 0.96696 * 113.99878 * 89.99772 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3407 2.5013 0.0011 6 6 4.2356 -0.0249 0.0005 7 6 5.7097 -0.0814 0.0016 8 8 6.3164 -0.1051 1.0550 9 7 6.3839 -0.1067 -1.1651 10 6 7.8478 -0.1633 -1.1640 11 1 8.2863 0.2223 -0.2437 12 6 8.4158 -1.5279 -1.5945 13 6 9.4838 -0.7517 -2.3864 14 1 10.3827 -0.5308 -1.8109 15 7 9.7761 -1.3288 -3.7008 16 6 10.9657 -1.9719 -3.9169 17 1 11.6864 -2.0575 -3.1171 18 6 11.2452 -2.5137 -5.1640 19 7 10.3671 -2.4088 -6.1389 20 14 12.8675 -3.3915 -5.4586 21 1 12.9808 -4.5465 -4.5322 22 1 12.9212 -3.8747 -6.8618 23 1 13.9906 -2.4506 -5.2164 24 6 8.4850 0.4052 -2.4325 25 6 7.6486 0.6784 -3.6832 26 6 7.6567 2.1584 -3.2596 27 6 8.9594 1.8573 -2.4965 28 6 3.4758 -1.2041 -0.0059 29 8 4.0992 -2.4064 -0.0121 30 7 2.1546 -1.1490 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6411 2.1375 0.0004 35 1 4.5274 2.8135 -1.0265 36 1 3.7616 3.2689 0.5145 37 1 5.2909 2.3582 0.5155 38 1 5.9000 -0.0875 -2.0055 39 1 7.7378 -2.1031 -2.2251 40 1 8.8233 -2.1108 -0.7686 41 1 9.1289 -1.2518 -4.4192 42 1 10.5623 -2.7878 -7.0102 43 1 8.1803 0.4872 -4.6153 44 1 6.6596 0.2212 -3.6566 45 1 6.8243 2.4309 -2.6108 46 1 7.7886 2.8505 -4.0913 47 1 9.0174 2.3420 -1.5219 48 1 9.8595 1.9976 -3.0950 49 1 4.2800 -2.7601 0.8694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078693068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:38 Heat of formation + Delta-G solvation = -14.387039 kcal Electronic energy + Delta-G solvation = -30868.859494 eV Core-core repulsion = 26796.700323 eV Total energy + Delta-G solvation = -4072.159170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25376 -41.60002 -39.81159 -38.44979 -36.40112 -35.64304 -35.27727 -34.05822 -32.78869 -31.73223 -29.48524 -28.46532 -26.81436 -26.46247 -25.43846 -24.80482 -23.80455 -22.60116 -21.76045 -21.50995 -19.69815 -19.53581 -19.33315 -18.33118 -18.19400 -17.59114 -16.72576 -16.61435 -16.46066 -16.25449 -15.70143 -15.48216 -15.15220 -14.99083 -14.86419 -14.41531 -14.20242 -14.00942 -13.93230 -13.90583 -13.45216 -13.24479 -13.18961 -13.12972 -12.96106 -12.87906 -12.83380 -12.80115 -12.63298 -12.37618 -12.29073 -12.12569 -11.83256 -11.48187 -11.40579 -11.08517 -11.04046 -10.65154 -10.62191 -10.47577 -10.01066 -9.87295 -8.95427 -7.94631 -5.21864 -0.30774 0.03447 1.35984 1.46711 1.49084 1.54938 2.03761 2.28903 2.56330 2.63252 3.35324 3.38767 3.41309 3.55553 3.57647 3.61508 3.75047 3.91829 3.97749 3.99916 4.14176 4.19683 4.28447 4.31351 4.50876 4.52820 4.58823 4.60405 4.69009 4.70376 4.75157 4.81485 4.93715 4.95800 4.98361 5.02629 5.06423 5.11383 5.12686 5.13439 5.19892 5.27888 5.44576 5.50140 5.51800 5.56822 5.68665 6.27579 6.38811 6.40600 6.79986 7.03552 7.34662 8.11197 8.35462 9.28284 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002660 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.307756 B =10523.633033 C =11100.679365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.159 3.841 3 C -0.175 4.175 4 C 0.010 3.990 5 C -0.124 4.124 6 C -0.223 4.223 7 C 0.584 3.416 8 O -0.572 6.572 9 N -0.688 5.688 10 C 0.164 3.836 11 H 0.114 0.886 12 C -0.170 4.170 13 C 0.164 3.836 14 H 0.078 0.922 15 N -0.717 5.717 16 C -0.243 4.243 17 H 0.074 0.926 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.277 1.277 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.119 4.119 28 C 0.338 3.662 29 O -0.492 6.492 30 N -0.532 5.532 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.185 0.815 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.407 0.593 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.735 14.103 13.579 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.022 3.978 3 C -0.195 4.195 4 C 0.002 3.998 5 C -0.180 4.180 6 C -0.229 4.229 7 C 0.370 3.630 8 O -0.451 6.451 9 N -0.337 5.337 10 C 0.059 3.941 11 H 0.132 0.868 12 C -0.212 4.212 13 C 0.053 3.947 14 H 0.096 0.904 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.092 0.908 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.799 3.201 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.203 1.203 24 C -0.117 4.117 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.156 4.156 28 C 0.158 3.842 29 O -0.302 6.302 30 N -0.253 5.253 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.203 0.797 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.243 0.757 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.211 0.789 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -20.528 13.247 13.731 28.025 hybrid contribution 1.347 -0.839 -0.624 1.705 sum -19.181 12.408 13.106 26.337 Atomic orbital electron populations 1.20935 0.85606 1.05074 1.04589 1.21914 0.98691 0.86835 0.90384 1.22187 0.92923 1.00768 1.03592 1.20611 0.94656 0.93915 0.90639 1.21025 0.99662 0.92638 1.04647 1.20850 0.93783 0.95258 1.13059 1.17994 0.86623 0.74645 0.83726 1.90778 1.70302 1.51761 1.32291 1.45899 1.06990 1.72515 1.08313 1.21871 0.78658 0.96046 0.97552 0.86834 1.24130 1.00123 0.96970 1.00026 1.21419 0.94280 0.92292 0.86689 0.90444 1.42424 1.18717 1.65080 1.09265 1.19643 0.95206 1.26816 0.95815 0.90778 1.25500 1.01590 1.03291 0.96183 1.69797 1.36945 1.52237 1.02850 0.85267 0.80005 0.78581 0.76244 1.20784 1.22263 1.20331 1.23337 0.97397 0.95727 0.95241 1.22415 0.98700 0.97635 0.96384 1.22768 0.97814 0.95006 1.00058 1.22653 0.97998 0.93906 1.01061 1.19187 0.86880 0.84552 0.93537 1.84676 1.76856 1.33083 1.35622 1.67118 1.08833 1.32190 1.17201 0.88762 0.90754 0.87187 0.79734 0.88176 0.87339 0.92431 0.75651 0.91764 0.92462 0.78917 0.94072 0.91408 0.91612 0.88694 0.90802 0.90224 0.90980 0.72174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.16 71.24 0.72 -0.18 16 2 C 0.16 2.60 6.78 42.58 0.29 2.89 16 3 C -0.18 -2.24 9.41 22.32 0.21 -2.03 16 4 C 0.01 0.17 5.95 -19.42 -0.12 0.05 16 5 C -0.12 -1.53 9.69 71.23 0.69 -0.84 16 6 C -0.22 -5.35 5.66 -19.91 -0.11 -5.47 16 7 C 0.58 16.38 5.42 86.69 0.47 16.85 16 8 O -0.57 -19.69 16.70 -3.98 -0.07 -19.75 16 9 N -0.69 -18.33 5.28 -444.34 -2.34 -20.67 16 10 C 0.16 4.91 4.12 45.28 0.19 5.10 16 11 H 0.11 3.47 7.46 -2.39 -0.02 3.45 16 12 C -0.17 -6.23 7.69 31.23 0.24 -5.99 16 13 C 0.16 6.47 4.36 45.28 0.20 6.67 16 14 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 15 N -0.72 -35.74 5.30 -321.55 -1.70 -37.44 16 16 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 19 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 20 Si 0.97 46.48 29.55 68.60 2.03 48.50 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 C -0.11 -3.52 1.06 -52.31 -0.06 -3.58 16 25 C -0.11 -3.36 6.77 30.88 0.21 -3.15 16 26 C -0.12 -2.70 8.08 31.23 0.25 -2.45 16 27 C -0.12 -3.14 7.84 30.88 0.24 -2.90 16 28 C 0.34 8.72 7.77 85.13 0.66 9.38 16 29 O -0.49 -13.09 13.01 -87.21 -1.13 -14.22 16 30 N -0.53 -12.66 10.28 -296.05 -3.04 -15.71 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.11 0.28 8.07 -2.39 -0.02 0.26 16 34 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.11 0.73 8.10 -2.39 -0.02 0.71 16 37 H 0.06 0.99 7.19 -2.39 -0.02 0.97 16 38 H 0.41 10.06 6.71 -92.71 -0.62 9.44 16 39 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.38 19.98 6.23 -92.71 -0.58 19.40 16 42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.07 2.48 7.03 -2.39 -0.02 2.46 16 44 H 0.07 1.78 6.42 -2.39 -0.02 1.77 16 45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.42 7.90 9.06 -74.06 -0.67 7.23 16 Total: -1.00 -74.96 402.58 -1.46 -76.41 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.87 Total: 43.62 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.39 Total: -2.02 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -6.81 Total: -132.55 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.20 Total: -33.98 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.96 -1.46 -76.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078693068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.027 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds