Wall clock time and date at job start Wed Apr 1 2020 04:52:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38356 * 119.40650 * 2 1
4 4 C 1.38333 * 119.45825 * 179.97438 * 3 2 1
5 5 C 1.50697 * 120.82544 * 180.02562 * 4 3 2
6 6 C 1.39996 * 118.34853 * 0.02562 * 4 3 2
7 7 C 1.47521 * 120.59265 * 180.02562 * 6 4 3
8 8 O 1.21585 * 120.00315 * 90.00342 * 7 6 4
9 9 N 1.34777 * 119.99623 * 269.99591 * 7 6 4
10 10 C 1.46498 * 119.99821 * 180.02562 * 9 7 6
11 11 H 1.08997 * 112.88810 * 336.34656 * 10 9 7
12 12 C 1.53952 * 113.74849 * 107.77135 * 10 9 7
13 13 C 1.53954 * 87.29718 * 139.21662 * 12 10 9
14 14 H 1.09002 * 113.74607 * 89.75069 * 13 12 10
15 15 N 1.46498 * 113.66167 * 220.79713 * 13 12 10
16 16 C 1.36943 * 119.99752 * 251.90877 * 15 13 12
17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13
18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13
19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15
20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16
22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16
23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16
24 24 C 1.52909 * 86.78194 * 335.27068 * 13 12 10
25 25 C 1.52916 * 121.13545 * 259.17990 * 24 13 12
26 26 C 1.53944 * 86.78375 * 209.37932 * 25 24 13
27 27 C 1.52903 * 121.13947 * 150.62172 * 24 13 12
28 28 C 1.40277 * 118.80561 * 0.27375 * 6 4 3
29 29 O 1.35425 * 119.79987 * 179.70449 * 28 6 4
30 30 N 1.31886 * 119.40517 * 179.97438 * 2 1 3
31 31 H 1.08997 * 109.47343 * 90.00251 * 1 2 3
32 32 H 1.09007 * 109.47172 * 209.99814 * 1 2 3
33 33 H 1.09000 * 109.47418 * 329.99781 * 1 2 3
34 34 H 1.08001 * 120.26827 * 0.02562 * 3 2 1
35 35 H 1.09012 * 109.46761 * 269.97791 * 5 4 3
36 36 H 1.08999 * 109.47177 * 29.97638 * 5 4 3
37 37 H 1.08996 * 109.47385 * 149.98318 * 5 4 3
38 38 H 0.97001 * 120.00637 * 0.02562 * 9 7 6
39 39 H 1.09000 * 113.57696 * 24.61802 * 12 10 9
40 40 H 1.08997 * 113.58404 * 253.82326 * 12 10 9
41 41 H 0.97001 * 120.00384 * 72.19233 * 15 13 12
42 42 H 0.96999 * 119.99739 * 180.02562 * 19 18 16
43 43 H 1.09003 * 113.66006 * 323.85283 * 25 24 13
44 44 H 1.09000 * 113.66434 * 94.90668 * 25 24 13
45 45 H 1.08999 * 113.58449 * 270.13378 * 26 25 24
46 46 H 1.08998 * 113.65291 * 139.34532 * 26 25 24
47 47 H 1.09002 * 113.66292 * 265.08700 * 27 24 13
48 48 H 1.09002 * 113.66630 * 36.13814 * 27 24 13
49 49 H 0.96696 * 113.99878 * 89.99772 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2053 0.0000
4 6 3.5697 1.2065 0.0005
5 6 4.3407 2.5013 0.0011
6 6 4.2356 -0.0249 0.0005
7 6 5.7097 -0.0814 0.0016
8 8 6.3164 -0.1051 1.0550
9 7 6.3839 -0.1067 -1.1651
10 6 7.8478 -0.1633 -1.1640
11 1 8.2863 0.2223 -0.2437
12 6 8.4158 -1.5279 -1.5945
13 6 9.4838 -0.7517 -2.3864
14 1 10.3827 -0.5308 -1.8109
15 7 9.7761 -1.3288 -3.7008
16 6 10.9657 -1.9719 -3.9169
17 1 11.6864 -2.0575 -3.1171
18 6 11.2452 -2.5137 -5.1640
19 7 10.3671 -2.4088 -6.1389
20 14 12.8675 -3.3915 -5.4586
21 1 12.9808 -4.5465 -4.5322
22 1 12.9212 -3.8747 -6.8618
23 1 13.9906 -2.4506 -5.2164
24 6 8.4850 0.4052 -2.4325
25 6 7.6486 0.6784 -3.6832
26 6 7.6567 2.1584 -3.2596
27 6 8.9594 1.8573 -2.4965
28 6 3.4758 -1.2041 -0.0059
29 8 4.0992 -2.4064 -0.0121
30 7 2.1546 -1.1490 0.0005
31 1 -0.3634 0.0000 -1.0276
32 1 -0.3634 -0.8901 0.5138
33 1 -0.3634 0.8899 0.5139
34 1 1.6411 2.1375 0.0004
35 1 4.5274 2.8135 -1.0265
36 1 3.7616 3.2689 0.5145
37 1 5.2909 2.3582 0.5155
38 1 5.9000 -0.0875 -2.0055
39 1 7.7378 -2.1031 -2.2251
40 1 8.8233 -2.1108 -0.7686
41 1 9.1289 -1.2518 -4.4192
42 1 10.5623 -2.7878 -7.0102
43 1 8.1803 0.4872 -4.6153
44 1 6.6596 0.2212 -3.6566
45 1 6.8243 2.4309 -2.6108
46 1 7.7886 2.8505 -4.0913
47 1 9.0174 2.3420 -1.5219
48 1 9.8595 1.9976 -3.0950
49 1 4.2800 -2.7601 0.8694
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001078693068.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:38
Heat of formation + Delta-G solvation = -14.387039 kcal
Electronic energy + Delta-G solvation = -30868.859494 eV
Core-core repulsion = 26796.700323 eV
Total energy + Delta-G solvation = -4072.159170 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.25376 -41.60002 -39.81159 -38.44979 -36.40112 -35.64304 -35.27727 -34.05822
-32.78869 -31.73223 -29.48524 -28.46532 -26.81436 -26.46247 -25.43846 -24.80482
-23.80455 -22.60116 -21.76045 -21.50995 -19.69815 -19.53581 -19.33315 -18.33118
-18.19400 -17.59114 -16.72576 -16.61435 -16.46066 -16.25449 -15.70143 -15.48216
-15.15220 -14.99083 -14.86419 -14.41531 -14.20242 -14.00942 -13.93230 -13.90583
-13.45216 -13.24479 -13.18961 -13.12972 -12.96106 -12.87906 -12.83380 -12.80115
-12.63298 -12.37618 -12.29073 -12.12569 -11.83256 -11.48187 -11.40579 -11.08517
-11.04046 -10.65154 -10.62191 -10.47577 -10.01066 -9.87295 -8.95427 -7.94631
-5.21864 -0.30774 0.03447 1.35984 1.46711 1.49084 1.54938 2.03761
2.28903 2.56330 2.63252 3.35324 3.38767 3.41309 3.55553 3.57647
3.61508 3.75047 3.91829 3.97749 3.99916 4.14176 4.19683 4.28447
4.31351 4.50876 4.52820 4.58823 4.60405 4.69009 4.70376 4.75157
4.81485 4.93715 4.95800 4.98361 5.02629 5.06423 5.11383 5.12686
5.13439 5.19892 5.27888 5.44576 5.50140 5.51800 5.56822 5.68665
6.27579 6.38811 6.40600 6.79986 7.03552 7.34662 8.11197 8.35462
9.28284
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016512 B = 0.002660 C = 0.002522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.307756 B =10523.633033 C =11100.679365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.159 3.841
3 C -0.175 4.175
4 C 0.010 3.990
5 C -0.124 4.124
6 C -0.223 4.223
7 C 0.584 3.416
8 O -0.572 6.572
9 N -0.688 5.688
10 C 0.164 3.836
11 H 0.114 0.886
12 C -0.170 4.170
13 C 0.164 3.836
14 H 0.078 0.922
15 N -0.717 5.717
16 C -0.243 4.243
17 H 0.074 0.926
18 C -0.073 4.073
19 N -0.968 5.968
20 Si 0.970 3.030
21 H -0.281 1.281
22 H -0.296 1.296
23 H -0.277 1.277
24 C -0.115 4.115
25 C -0.113 4.113
26 C -0.119 4.119
27 C -0.119 4.119
28 C 0.338 3.662
29 O -0.492 6.492
30 N -0.532 5.532
31 H 0.094 0.906
32 H 0.074 0.926
33 H 0.110 0.890
34 H 0.185 0.815
35 H 0.100 0.900
36 H 0.108 0.892
37 H 0.057 0.943
38 H 0.407 0.593
39 H 0.064 0.936
40 H 0.057 0.943
41 H 0.377 0.623
42 H 0.251 0.749
43 H 0.067 0.933
44 H 0.065 0.935
45 H 0.095 0.905
46 H 0.073 0.927
47 H 0.079 0.921
48 H 0.072 0.928
49 H 0.417 0.583
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.735 14.103 13.579 28.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.022 3.978
3 C -0.195 4.195
4 C 0.002 3.998
5 C -0.180 4.180
6 C -0.229 4.229
7 C 0.370 3.630
8 O -0.451 6.451
9 N -0.337 5.337
10 C 0.059 3.941
11 H 0.132 0.868
12 C -0.212 4.212
13 C 0.053 3.947
14 H 0.096 0.904
15 N -0.355 5.355
16 C -0.375 4.375
17 H 0.092 0.908
18 C -0.266 4.266
19 N -0.618 5.618
20 Si 0.799 3.201
21 H -0.208 1.208
22 H -0.223 1.223
23 H -0.203 1.203
24 C -0.117 4.117
25 C -0.151 4.151
26 C -0.156 4.156
27 C -0.156 4.156
28 C 0.158 3.842
29 O -0.302 6.302
30 N -0.253 5.253
31 H 0.112 0.888
32 H 0.092 0.908
33 H 0.128 0.872
34 H 0.203 0.797
35 H 0.118 0.882
36 H 0.127 0.873
37 H 0.076 0.924
38 H 0.243 0.757
39 H 0.082 0.918
40 H 0.075 0.925
41 H 0.211 0.789
42 H 0.059 0.941
43 H 0.086 0.914
44 H 0.084 0.916
45 H 0.113 0.887
46 H 0.092 0.908
47 H 0.098 0.902
48 H 0.090 0.910
49 H 0.278 0.722
Dipole moment (debyes) X Y Z Total
from point charges -20.528 13.247 13.731 28.025
hybrid contribution 1.347 -0.839 -0.624 1.705
sum -19.181 12.408 13.106 26.337
Atomic orbital electron populations
1.20935 0.85606 1.05074 1.04589 1.21914 0.98691 0.86835 0.90384
1.22187 0.92923 1.00768 1.03592 1.20611 0.94656 0.93915 0.90639
1.21025 0.99662 0.92638 1.04647 1.20850 0.93783 0.95258 1.13059
1.17994 0.86623 0.74645 0.83726 1.90778 1.70302 1.51761 1.32291
1.45899 1.06990 1.72515 1.08313 1.21871 0.78658 0.96046 0.97552
0.86834 1.24130 1.00123 0.96970 1.00026 1.21419 0.94280 0.92292
0.86689 0.90444 1.42424 1.18717 1.65080 1.09265 1.19643 0.95206
1.26816 0.95815 0.90778 1.25500 1.01590 1.03291 0.96183 1.69797
1.36945 1.52237 1.02850 0.85267 0.80005 0.78581 0.76244 1.20784
1.22263 1.20331 1.23337 0.97397 0.95727 0.95241 1.22415 0.98700
0.97635 0.96384 1.22768 0.97814 0.95006 1.00058 1.22653 0.97998
0.93906 1.01061 1.19187 0.86880 0.84552 0.93537 1.84676 1.76856
1.33083 1.35622 1.67118 1.08833 1.32190 1.17201 0.88762 0.90754
0.87187 0.79734 0.88176 0.87339 0.92431 0.75651 0.91764 0.92462
0.78917 0.94072 0.91408 0.91612 0.88694 0.90802 0.90224 0.90980
0.72174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.90 10.16 71.24 0.72 -0.18 16
2 C 0.16 2.60 6.78 42.58 0.29 2.89 16
3 C -0.18 -2.24 9.41 22.32 0.21 -2.03 16
4 C 0.01 0.17 5.95 -19.42 -0.12 0.05 16
5 C -0.12 -1.53 9.69 71.23 0.69 -0.84 16
6 C -0.22 -5.35 5.66 -19.91 -0.11 -5.47 16
7 C 0.58 16.38 5.42 86.69 0.47 16.85 16
8 O -0.57 -19.69 16.70 -3.98 -0.07 -19.75 16
9 N -0.69 -18.33 5.28 -444.34 -2.34 -20.67 16
10 C 0.16 4.91 4.12 45.28 0.19 5.10 16
11 H 0.11 3.47 7.46 -2.39 -0.02 3.45 16
12 C -0.17 -6.23 7.69 31.23 0.24 -5.99 16
13 C 0.16 6.47 4.36 45.28 0.20 6.67 16
14 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16
15 N -0.72 -35.74 5.30 -321.55 -1.70 -37.44 16
16 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16
17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16
18 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16
19 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16
20 Si 0.97 46.48 29.55 68.60 2.03 48.50 16
21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16
22 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16
23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
24 C -0.11 -3.52 1.06 -52.31 -0.06 -3.58 16
25 C -0.11 -3.36 6.77 30.88 0.21 -3.15 16
26 C -0.12 -2.70 8.08 31.23 0.25 -2.45 16
27 C -0.12 -3.14 7.84 30.88 0.24 -2.90 16
28 C 0.34 8.72 7.77 85.13 0.66 9.38 16
29 O -0.49 -13.09 13.01 -87.21 -1.13 -14.22 16
30 N -0.53 -12.66 10.28 -296.05 -3.04 -15.71 16
31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16
32 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
33 H 0.11 0.28 8.07 -2.39 -0.02 0.26 16
34 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16
35 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16
36 H 0.11 0.73 8.10 -2.39 -0.02 0.71 16
37 H 0.06 0.99 7.19 -2.39 -0.02 0.97 16
38 H 0.41 10.06 6.71 -92.71 -0.62 9.44 16
39 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16
40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
41 H 0.38 19.98 6.23 -92.71 -0.58 19.40 16
42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16
43 H 0.07 2.48 7.03 -2.39 -0.02 2.46 16
44 H 0.07 1.78 6.42 -2.39 -0.02 1.77 16
45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
49 H 0.42 7.90 9.06 -74.06 -0.67 7.23 16
Total: -1.00 -74.96 402.58 -1.46 -76.41
By element:
Atomic # 1 Polarization: 44.49 SS G_CDS: -0.87 Total: 43.62 kcal
Atomic # 6 Polarization: -7.41 SS G_CDS: 5.39 Total: -2.02 kcal
Atomic # 7 Polarization: -125.74 SS G_CDS: -6.81 Total: -132.55 kcal
Atomic # 8 Polarization: -32.78 SS G_CDS: -1.20 Total: -33.98 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal
Total: -74.96 -1.46 -76.41 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078693068.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.027 kcal
(2) G-P(sol) polarization free energy of solvation -74.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds