Wall clock time and date at job start Wed Apr 1 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38365 * 119.40781 * 2 1 4 4 C 1.38336 * 119.45729 * 179.72726 * 3 2 1 5 5 C 1.50707 * 120.81956 * 179.97438 * 4 3 2 6 6 C 1.39977 * 118.35157 * 359.97438 * 4 3 2 7 7 C 1.47527 * 120.59911 * 179.97438 * 6 4 3 8 8 O 1.21590 * 119.99678 * 89.99746 * 7 6 4 9 9 N 1.34770 * 120.00462 * 270.00411 * 7 6 4 10 10 C 1.46493 * 120.00426 * 179.97438 * 9 7 6 11 11 H 1.08995 * 112.88631 * 333.16206 * 10 9 7 12 12 C 1.53962 * 113.66042 * 104.50176 * 10 9 7 13 13 C 1.53952 * 87.29205 * 139.20601 * 12 10 9 14 14 H 1.08998 * 113.66887 * 220.79027 * 13 12 10 15 15 N 1.46507 * 113.66111 * 89.83025 * 13 12 10 16 16 C 1.36938 * 120.00092 * 104.50096 * 15 13 12 17 17 H 1.08001 * 119.99671 * 0.02562 * 16 15 13 18 18 C 1.38806 * 120.00233 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99646 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47179 * 90.00250 * 20 18 16 22 22 H 1.48507 * 109.47142 * 210.00092 * 20 18 16 23 23 H 1.48496 * 109.47135 * 329.99945 * 20 18 16 24 24 C 1.52903 * 86.78510 * 335.26732 * 13 12 10 25 25 C 1.52915 * 121.14025 * 150.62376 * 24 13 12 26 26 C 1.53955 * 86.78356 * 100.81131 * 25 24 13 27 27 C 1.52914 * 121.13457 * 259.17860 * 24 13 12 28 28 C 1.40282 * 118.80800 * 0.02562 * 6 4 3 29 29 O 1.35428 * 119.79993 * 180.02562 * 28 6 4 30 30 N 1.31875 * 119.41007 * 179.73180 * 2 1 3 31 31 H 1.08993 * 109.47600 * 89.99817 * 1 2 3 32 32 H 1.09000 * 109.46898 * 210.00332 * 1 2 3 33 33 H 1.09008 * 109.47134 * 329.99426 * 1 2 3 34 34 H 1.08003 * 120.26523 * 359.74631 * 3 2 1 35 35 H 1.09004 * 109.46940 * 89.99970 * 5 4 3 36 36 H 1.08996 * 109.46866 * 209.99489 * 5 4 3 37 37 H 1.08997 * 109.47510 * 329.99857 * 5 4 3 38 38 H 0.97009 * 119.99441 * 359.97438 * 9 7 6 39 39 H 1.08990 * 113.58089 * 253.81018 * 12 10 9 40 40 H 1.08998 * 113.57577 * 24.61016 * 12 10 9 41 41 H 0.96997 * 119.99938 * 284.50912 * 15 13 12 42 42 H 0.97004 * 119.99247 * 179.97438 * 19 18 16 43 43 H 1.08990 * 113.66369 * 215.28464 * 25 24 13 44 44 H 1.09001 * 113.66108 * 346.33979 * 25 24 13 45 45 H 1.08997 * 113.57709 * 270.13755 * 26 25 24 46 46 H 1.08997 * 113.57525 * 139.34002 * 26 25 24 47 47 H 1.08998 * 113.65744 * 13.65412 * 27 24 13 48 48 H 1.09000 * 113.66342 * 144.71359 * 27 24 13 49 49 H 0.96699 * 113.99966 * 90.00325 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2066 0.0057 5 6 4.3407 2.5015 0.0053 6 6 4.2355 -0.0247 0.0119 7 6 5.7097 -0.0813 0.0176 8 8 6.3131 -0.1014 1.0730 9 7 6.3875 -0.1106 -1.1468 10 6 7.8513 -0.1662 -1.1412 11 1 8.2888 0.2736 -0.2449 12 6 8.4183 -1.5550 -1.4878 13 6 9.4870 -0.8292 -2.3251 14 1 9.7045 -1.3173 -3.2751 15 7 10.6953 -0.4894 -1.5694 16 6 11.8406 -1.2190 -1.7453 17 1 11.8534 -2.0447 -2.4413 18 6 12.9853 -0.8975 -1.0289 19 7 12.9695 0.1085 -0.1802 20 14 14.5479 -1.8923 -1.2693 21 1 15.3581 -1.2864 -2.3563 22 1 15.3328 -1.8935 -0.0087 23 1 14.1950 -3.2879 -1.6340 24 6 8.4892 0.3236 -2.4417 25 6 8.9649 1.7688 -2.5938 26 6 8.6589 1.6202 -4.0953 27 6 7.6535 0.5209 -3.7069 28 6 3.4757 -1.2040 0.0115 29 8 4.0992 -2.4063 0.0180 30 7 2.1545 -1.1488 0.0054 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5140 34 1 1.6410 2.1376 -0.0041 35 1 4.5223 2.8165 1.0329 36 1 5.2934 2.3569 -0.5041 37 1 3.7641 3.2676 -0.5130 38 1 5.9059 -0.0948 -1.9888 39 1 8.8251 -2.0869 -0.6279 40 1 7.7399 -2.1668 -2.0825 41 1 10.6838 0.2523 -0.9444 42 1 13.7693 0.3329 0.3206 43 1 8.3285 2.4944 -2.0874 44 1 10.0238 1.9062 -2.3747 45 1 9.5034 1.2525 -4.6780 46 1 8.1927 2.5021 -4.5346 47 1 7.6647 -0.3387 -4.3770 48 1 6.6485 0.8959 -3.5134 49 1 4.2758 -2.7529 0.9032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078693070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:48 Heat of formation + Delta-G solvation = 11.639619 kcal Electronic energy + Delta-G solvation = -30813.523260 eV Core-core repulsion = 26742.492690 eV Total energy + Delta-G solvation = -4071.030570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.22003 -40.41485 -38.63862 -37.57499 -35.06134 -34.50504 -34.02958 -32.39062 -31.99485 -29.74449 -28.61862 -27.84521 -25.55965 -24.74263 -24.19046 -23.63205 -22.67727 -21.77693 -20.45246 -20.35033 -18.66157 -18.27962 -17.52596 -17.40597 -16.95328 -16.21559 -15.75247 -15.32570 -15.15384 -14.72422 -14.54245 -14.31700 -14.09339 -13.93911 -13.63652 -13.33141 -13.29322 -13.01675 -12.74176 -12.67511 -12.51136 -12.31930 -12.20061 -12.13337 -11.92890 -11.88630 -11.65495 -11.38301 -10.92146 -10.83437 -10.75036 -10.31501 -10.17313 -10.05010 -9.88126 -9.82554 -9.68631 -9.55944 -9.43556 -9.08940 -8.86589 -8.63869 -6.99957 -5.79459 -3.09030 0.49121 0.78738 2.56254 3.00844 3.17987 3.42838 3.48145 3.48557 3.50074 4.15340 4.20246 4.50164 4.57622 4.67100 4.75184 4.86892 4.89339 4.95452 4.99486 5.05655 5.16444 5.18177 5.24621 5.27064 5.31777 5.44925 5.49050 5.61283 5.64856 5.71115 5.80096 5.82557 5.91386 5.93697 5.99512 6.04262 6.10975 6.13927 6.21245 6.41364 6.55296 6.63014 6.71160 6.77438 6.86974 7.07399 7.18600 7.55495 7.61579 7.69864 8.25657 8.38798 9.50012 10.05805 10.40496 11.42625 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.002639 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.335411 B =10607.963934 C =11150.394670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.188 4.188 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.200 4.200 7 C 0.572 3.428 8 O -0.529 6.529 9 N -0.701 5.701 10 C 0.138 3.862 11 H 0.114 0.886 12 C -0.180 4.180 13 C 0.197 3.803 14 H 0.067 0.933 15 N -0.701 5.701 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.116 4.116 28 C 0.355 3.645 29 O -0.475 6.475 30 N -0.507 5.507 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.397 0.603 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.216 4.851 -3.216 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.208 4.208 4 C 0.003 3.997 5 C -0.181 4.181 6 C -0.207 4.207 7 C 0.356 3.644 8 O -0.406 6.406 9 N -0.350 5.350 10 C 0.034 3.966 11 H 0.132 0.868 12 C -0.223 4.223 13 C 0.084 3.916 14 H 0.085 0.915 15 N -0.339 5.339 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.124 4.124 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.154 4.154 28 C 0.176 3.824 29 O -0.283 6.283 30 N -0.227 5.227 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -24.989 3.961 -3.076 25.487 hybrid contribution 1.066 0.240 0.311 1.136 sum -23.923 4.200 -2.764 24.446 Atomic orbital electron populations 1.20794 0.88174 1.03872 1.03522 1.21170 0.96957 0.87087 0.92025 1.21773 0.93616 0.99600 1.05795 1.20285 0.93656 0.94251 0.91488 1.20952 1.00237 0.92984 1.03954 1.21006 0.95405 0.94043 1.10238 1.17774 0.85675 0.76329 0.84666 1.90850 1.69356 1.49433 1.30924 1.46075 1.08014 1.73270 1.07631 1.22482 0.76810 0.98396 0.98872 0.86822 1.24279 0.99838 0.96035 1.02100 1.20631 0.85530 0.91082 0.94369 0.91512 1.42102 1.06175 1.37585 1.48012 1.19238 0.88427 1.09914 1.19799 0.90995 1.24756 0.98157 0.98578 0.99169 1.69668 1.28650 1.30050 1.29345 0.86179 0.83478 0.79494 0.76956 1.21701 1.21767 1.20710 1.23559 0.98206 0.97017 0.93591 1.22638 1.02700 0.95402 0.95558 1.22737 0.99092 0.98006 0.97168 1.22535 0.97212 0.99280 0.96378 1.19020 0.86286 0.84554 0.92569 1.84689 1.76609 1.32589 1.34373 1.67051 1.09167 1.30420 1.16094 0.89908 0.90127 0.90220 0.83848 0.89477 0.90506 0.90148 0.76844 0.90845 0.91135 0.77873 0.93405 0.91106 0.89844 0.89985 0.92254 0.91317 0.90841 0.73268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.00 0.37 -0.24 16 2 C 0.17 1.54 6.78 -82.53 -0.56 0.98 16 3 C -0.19 -1.57 9.41 -39.50 -0.37 -1.94 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.50 16 5 C -0.12 -1.08 9.69 36.01 0.35 -0.73 16 6 C -0.20 -2.56 5.66 -104.69 -0.59 -3.15 16 7 C 0.57 8.72 5.42 -12.48 -0.07 8.65 16 8 O -0.53 -10.21 16.75 5.29 0.09 -10.13 16 9 N -0.70 -9.84 5.29 -54.42 -0.29 -10.13 16 10 C 0.14 2.31 4.01 -67.48 -0.27 2.04 16 11 H 0.11 2.27 7.54 -51.93 -0.39 1.88 16 12 C -0.18 -3.26 7.68 -25.74 -0.20 -3.46 16 13 C 0.20 3.82 4.35 -67.48 -0.29 3.53 16 14 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 15 N -0.70 -17.08 4.91 -52.99 -0.26 -17.34 16 16 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.12 -1.90 0.91 -154.71 -0.14 -2.04 16 25 C -0.13 -1.95 7.60 -26.28 -0.20 -2.15 16 26 C -0.13 -1.75 8.08 -25.75 -0.21 -1.96 16 27 C -0.12 -1.45 7.16 -26.28 -0.19 -1.64 16 28 C 0.36 4.58 7.77 -16.61 -0.13 4.45 16 29 O -0.47 -5.97 13.01 -17.98 -0.23 -6.20 16 30 N -0.51 -6.13 10.28 -9.21 -0.09 -6.22 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.28 8.07 -51.92 -0.42 -0.14 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.77 7.19 -51.93 -0.37 0.40 16 37 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.40 4.76 6.91 -40.82 -0.28 4.47 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.39 10.11 7.48 -40.82 -0.31 9.80 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.55 7.51 -51.93 -0.39 1.16 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.78 6.96 -51.93 -0.36 0.42 16 49 H 0.41 3.63 9.06 45.56 0.41 4.05 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -33.75 404.69 -9.08 -42.83 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -6.73 Total: 16.23 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.37 Total: -5.31 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.08 Total: -60.77 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.15 Total: -16.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.75 -9.08 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078693070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.472 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds