Wall clock time and date at job start Wed Apr 1 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38365 * 119.40781 * 2 1 4 4 C 1.38336 * 119.45729 * 179.72726 * 3 2 1 5 5 C 1.50707 * 120.81956 * 179.97438 * 4 3 2 6 6 C 1.39977 * 118.35157 * 359.97438 * 4 3 2 7 7 C 1.47527 * 120.59911 * 179.97438 * 6 4 3 8 8 O 1.21590 * 119.99678 * 89.99746 * 7 6 4 9 9 N 1.34770 * 120.00462 * 270.00411 * 7 6 4 10 10 C 1.46493 * 120.00426 * 179.97438 * 9 7 6 11 11 H 1.08995 * 112.88631 * 333.16206 * 10 9 7 12 12 C 1.53962 * 113.66042 * 104.50176 * 10 9 7 13 13 C 1.53952 * 87.29205 * 139.20601 * 12 10 9 14 14 H 1.08998 * 113.66887 * 220.79027 * 13 12 10 15 15 N 1.46507 * 113.66111 * 89.83025 * 13 12 10 16 16 C 1.36938 * 120.00092 * 104.50096 * 15 13 12 17 17 H 1.08001 * 119.99671 * 0.02562 * 16 15 13 18 18 C 1.38806 * 120.00233 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99646 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47179 * 90.00250 * 20 18 16 22 22 H 1.48507 * 109.47142 * 210.00092 * 20 18 16 23 23 H 1.48496 * 109.47135 * 329.99945 * 20 18 16 24 24 C 1.52903 * 86.78510 * 335.26732 * 13 12 10 25 25 C 1.52915 * 121.14025 * 150.62376 * 24 13 12 26 26 C 1.53955 * 86.78356 * 100.81131 * 25 24 13 27 27 C 1.52914 * 121.13457 * 259.17860 * 24 13 12 28 28 C 1.40282 * 118.80800 * 0.02562 * 6 4 3 29 29 O 1.35428 * 119.79993 * 180.02562 * 28 6 4 30 30 N 1.31875 * 119.41007 * 179.73180 * 2 1 3 31 31 H 1.08993 * 109.47600 * 89.99817 * 1 2 3 32 32 H 1.09000 * 109.46898 * 210.00332 * 1 2 3 33 33 H 1.09008 * 109.47134 * 329.99426 * 1 2 3 34 34 H 1.08003 * 120.26523 * 359.74631 * 3 2 1 35 35 H 1.09004 * 109.46940 * 89.99970 * 5 4 3 36 36 H 1.08996 * 109.46866 * 209.99489 * 5 4 3 37 37 H 1.08997 * 109.47510 * 329.99857 * 5 4 3 38 38 H 0.97009 * 119.99441 * 359.97438 * 9 7 6 39 39 H 1.08990 * 113.58089 * 253.81018 * 12 10 9 40 40 H 1.08998 * 113.57577 * 24.61016 * 12 10 9 41 41 H 0.96997 * 119.99938 * 284.50912 * 15 13 12 42 42 H 0.97004 * 119.99247 * 179.97438 * 19 18 16 43 43 H 1.08990 * 113.66369 * 215.28464 * 25 24 13 44 44 H 1.09001 * 113.66108 * 346.33979 * 25 24 13 45 45 H 1.08997 * 113.57709 * 270.13755 * 26 25 24 46 46 H 1.08997 * 113.57525 * 139.34002 * 26 25 24 47 47 H 1.08998 * 113.65744 * 13.65412 * 27 24 13 48 48 H 1.09000 * 113.66342 * 144.71359 * 27 24 13 49 49 H 0.96699 * 113.99966 * 90.00325 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2066 0.0057 5 6 4.3407 2.5015 0.0053 6 6 4.2355 -0.0247 0.0119 7 6 5.7097 -0.0813 0.0176 8 8 6.3131 -0.1014 1.0730 9 7 6.3875 -0.1106 -1.1468 10 6 7.8513 -0.1662 -1.1412 11 1 8.2888 0.2736 -0.2449 12 6 8.4183 -1.5550 -1.4878 13 6 9.4870 -0.8292 -2.3251 14 1 9.7045 -1.3173 -3.2751 15 7 10.6953 -0.4894 -1.5694 16 6 11.8406 -1.2190 -1.7453 17 1 11.8534 -2.0447 -2.4413 18 6 12.9853 -0.8975 -1.0289 19 7 12.9695 0.1085 -0.1802 20 14 14.5479 -1.8923 -1.2693 21 1 15.3581 -1.2864 -2.3563 22 1 15.3328 -1.8935 -0.0087 23 1 14.1950 -3.2879 -1.6340 24 6 8.4892 0.3236 -2.4417 25 6 8.9649 1.7688 -2.5938 26 6 8.6589 1.6202 -4.0953 27 6 7.6535 0.5209 -3.7069 28 6 3.4757 -1.2040 0.0115 29 8 4.0992 -2.4063 0.0180 30 7 2.1545 -1.1488 0.0054 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5140 34 1 1.6410 2.1376 -0.0041 35 1 4.5223 2.8165 1.0329 36 1 5.2934 2.3569 -0.5041 37 1 3.7641 3.2676 -0.5130 38 1 5.9059 -0.0948 -1.9888 39 1 8.8251 -2.0869 -0.6279 40 1 7.7399 -2.1668 -2.0825 41 1 10.6838 0.2523 -0.9444 42 1 13.7693 0.3329 0.3206 43 1 8.3285 2.4944 -2.0874 44 1 10.0238 1.9062 -2.3747 45 1 9.5034 1.2525 -4.6780 46 1 8.1927 2.5021 -4.5346 47 1 7.6647 -0.3387 -4.3770 48 1 6.6485 0.8959 -3.5134 49 1 4.2758 -2.7529 0.9032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078693070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:46 Heat of formation + Delta-G solvation = -14.642234 kcal Electronic energy + Delta-G solvation = -30814.662927 eV Core-core repulsion = 26742.492690 eV Total energy + Delta-G solvation = -4072.170236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24226 -41.60775 -39.85425 -38.44000 -36.52309 -35.68579 -35.28514 -34.00113 -32.78679 -31.57707 -29.49564 -28.47974 -26.78502 -26.38151 -25.56179 -24.83430 -23.97982 -22.72572 -21.72052 -21.54152 -19.62682 -19.51473 -19.18717 -18.46282 -18.23817 -17.52754 -16.74168 -16.65303 -16.38176 -16.23373 -15.69601 -15.50950 -15.22034 -15.08107 -14.80255 -14.38352 -14.23776 -14.06362 -13.94077 -13.85585 -13.56474 -13.32897 -13.23377 -13.14651 -12.96117 -12.87122 -12.83648 -12.70378 -12.64191 -12.63219 -12.20610 -12.03789 -11.81453 -11.49099 -11.33016 -11.11868 -10.94983 -10.76110 -10.62733 -10.48308 -9.97447 -9.87392 -9.02702 -7.96220 -5.25299 -0.31596 0.01678 1.36576 1.45830 1.47674 1.55970 2.04345 2.26205 2.53346 2.64088 3.34980 3.36643 3.39257 3.51137 3.54027 3.61735 3.75696 3.91477 3.98422 4.01028 4.16214 4.17285 4.20350 4.28422 4.50218 4.53120 4.58046 4.62089 4.62424 4.74937 4.81081 4.82832 4.86585 4.95830 5.00379 5.02451 5.08928 5.12194 5.12731 5.18694 5.21852 5.28343 5.38055 5.51152 5.51768 5.58624 5.67786 6.25530 6.37225 6.42004 6.78751 7.08230 7.31296 8.06380 8.29406 9.27051 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.002639 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.335411 B =10607.963934 C =11150.394670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.174 4.174 4 C 0.009 3.991 5 C -0.124 4.124 6 C -0.221 4.221 7 C 0.577 3.423 8 O -0.579 6.579 9 N -0.685 5.685 10 C 0.148 3.852 11 H 0.074 0.926 12 C -0.172 4.172 13 C 0.181 3.819 14 H 0.071 0.929 15 N -0.714 5.714 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.270 1.270 24 C -0.111 4.111 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.098 4.098 28 C 0.341 3.659 29 O -0.491 6.491 30 N -0.529 5.529 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.186 0.814 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.411 0.589 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.673 5.828 -5.405 29.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.193 4.193 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.228 4.228 7 C 0.363 3.637 8 O -0.459 6.459 9 N -0.335 5.335 10 C 0.043 3.957 11 H 0.092 0.908 12 C -0.214 4.214 13 C 0.070 3.930 14 H 0.088 0.912 15 N -0.351 5.351 16 C -0.372 4.372 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.195 1.195 24 C -0.113 4.113 25 C -0.169 4.169 26 C -0.160 4.160 27 C -0.136 4.136 28 C 0.162 3.838 29 O -0.301 6.301 30 N -0.250 5.250 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.203 0.797 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.249 0.751 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.121 0.879 49 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -28.507 4.909 -5.332 29.414 hybrid contribution 1.992 -0.060 1.008 2.234 sum -26.515 4.850 -4.323 27.300 Atomic orbital electron populations 1.20936 0.85424 1.05048 1.04745 1.21920 0.98726 0.86723 0.90259 1.22179 0.92656 1.00920 1.03519 1.20564 0.94759 0.93697 0.90915 1.21009 0.99829 0.93167 1.04023 1.20822 0.93347 0.95445 1.13157 1.18171 0.86868 0.74766 0.83885 1.90823 1.70756 1.51650 1.32685 1.45845 1.06691 1.72651 1.08263 1.22005 0.78408 0.97206 0.98050 0.90789 1.24159 0.99803 0.96649 1.00763 1.20856 0.84755 0.93496 0.93895 0.91150 1.42219 1.07279 1.37046 1.48545 1.19640 0.89293 1.09568 1.18724 0.90359 1.25569 1.01402 1.00079 0.99658 1.69836 1.29076 1.32093 1.30921 0.85140 0.79636 0.78554 0.76425 1.21136 1.22514 1.19481 1.23390 0.97298 0.95944 0.94663 1.22675 1.00549 0.95483 0.98207 1.22679 0.99012 0.99407 0.94898 1.22571 0.97836 0.99531 0.93663 1.19119 0.86822 0.84396 0.93469 1.84633 1.76882 1.33014 1.35523 1.67129 1.08615 1.32076 1.17133 0.88448 0.90705 0.87338 0.79722 0.89809 0.92250 0.86660 0.75100 0.94387 0.88575 0.79440 0.94070 0.89610 0.93778 0.91159 0.89349 0.89913 0.87881 0.72169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.16 71.23 0.72 -0.07 16 2 C 0.16 2.52 6.78 42.58 0.29 2.81 16 3 C -0.17 -2.22 9.41 22.32 0.21 -2.01 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.04 16 5 C -0.12 -1.86 9.69 71.24 0.69 -1.17 16 6 C -0.22 -5.52 5.66 -19.91 -0.11 -5.64 16 7 C 0.58 17.95 5.42 86.69 0.47 18.42 16 8 O -0.58 -23.63 16.75 -4.00 -0.07 -23.70 16 9 N -0.68 -19.02 5.29 -444.34 -2.35 -21.37 16 10 C 0.15 5.11 4.01 45.29 0.18 5.29 16 11 H 0.07 3.20 7.54 -2.39 -0.02 3.18 16 12 C -0.17 -6.38 7.68 31.23 0.24 -6.14 16 13 C 0.18 7.17 4.35 45.28 0.20 7.37 16 14 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 15 N -0.71 -36.48 4.91 -321.56 -1.58 -38.06 16 16 C -0.24 -13.49 9.98 84.03 0.84 -12.65 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 19 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 20 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 C -0.11 -3.43 0.91 -52.31 -0.05 -3.48 16 25 C -0.13 -4.06 7.60 30.89 0.23 -3.83 16 26 C -0.12 -2.94 8.08 31.23 0.25 -2.68 16 27 C -0.10 -2.14 7.16 30.89 0.22 -1.92 16 28 C 0.34 8.65 7.77 85.13 0.66 9.31 16 29 O -0.49 -12.59 13.01 -87.23 -1.14 -13.72 16 30 N -0.53 -12.06 10.28 -296.05 -3.04 -15.10 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.23 8.07 -2.38 -0.02 0.21 16 34 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.11 7.19 -2.39 -0.02 1.09 16 37 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.41 9.02 6.91 -92.70 -0.64 8.38 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.37 20.85 7.48 -92.71 -0.69 20.16 16 42 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 43 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.04 1.72 7.51 -2.39 -0.02 1.70 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.10 1.71 6.96 -2.39 -0.02 1.69 16 49 H 0.42 7.98 9.06 -74.06 -0.67 7.31 16 Total: -1.00 -78.88 404.69 -1.47 -80.35 By element: Atomic # 1 Polarization: 44.15 SS G_CDS: -1.00 Total: 43.14 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.40 Total: -0.25 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -6.69 Total: -134.81 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.20 Total: -37.42 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -78.88 -1.47 -80.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078693070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.710 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds