Wall clock time and date at job start Wed Apr 1 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37990 * 120.82589 * 2 1 4 4 C 1.39128 * 119.26721 * 180.27642 * 3 2 1 5 5 O 1.35502 * 119.52570 * 179.72010 * 4 3 2 6 6 N 1.32436 * 120.94993 * 359.69570 * 4 3 2 7 7 C 1.31638 * 121.79570 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.68287 * 179.97438 * 7 6 4 9 9 C 1.39565 * 120.63146 * 0.02562 * 7 6 4 10 10 C 1.47613 * 120.50237 * 179.97438 * 9 7 6 11 11 O 1.21584 * 119.99363 * 89.99973 * 10 9 7 12 12 N 1.34774 * 120.00357 * 270.00303 * 10 9 7 13 13 C 1.46503 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94438 * 23.59083 * 13 12 10 15 15 C 1.53947 * 113.66246 * 252.18508 * 13 12 10 16 16 C 1.53940 * 87.29448 * 270.26168 * 15 13 12 17 17 H 1.09000 * 113.66946 * 89.74182 * 16 15 13 18 18 N 1.46505 * 113.66236 * 220.79726 * 16 15 13 19 19 C 1.36943 * 119.99990 * 252.18832 * 18 16 15 20 20 H 1.08002 * 119.99513 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00205 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47165 * 59.99877 * 23 21 19 25 25 H 1.48495 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47136 * 299.99989 * 23 21 19 27 27 C 1.52905 * 86.78782 * 335.26706 * 16 15 13 28 28 C 1.52904 * 121.14213 * 150.61642 * 27 16 15 29 29 C 1.53957 * 86.78105 * 100.82198 * 28 27 16 30 30 C 1.52914 * 121.13770 * 259.18710 * 27 16 15 31 31 H 1.09005 * 109.46881 * 270.27370 * 1 2 3 32 32 H 1.08998 * 109.46904 * 30.27377 * 1 2 3 33 33 H 1.08994 * 109.47160 * 150.27290 * 1 2 3 34 34 H 1.08004 * 120.36488 * 359.97013 * 3 2 1 35 35 H 0.96701 * 113.99661 * 269.98344 * 5 4 3 36 36 H 1.09001 * 109.47562 * 270.02198 * 8 7 6 37 37 H 1.09001 * 109.47189 * 30.02687 * 8 7 6 38 38 H 1.09003 * 109.46931 * 150.02080 * 8 7 6 39 39 H 0.97003 * 119.99736 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.57959 * 155.65686 * 15 13 12 41 41 H 1.09003 * 113.57772 * 24.86438 * 15 13 12 42 42 H 0.96996 * 120.00019 * 72.18452 * 18 16 15 43 43 H 0.97001 * 119.99798 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.66244 * 346.35405 * 28 27 16 45 45 H 1.08997 * 113.66842 * 215.29629 * 28 27 16 46 46 H 1.08998 * 113.57948 * 139.33665 * 29 28 27 47 47 H 1.09000 * 113.57875 * 270.13309 * 29 28 27 48 48 H 1.08993 * 113.66382 * 144.70253 * 30 27 16 49 49 H 1.08992 * 113.66018 * 13.64281 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1471 -0.0059 5 8 4.3045 2.3076 -0.0116 6 7 4.2549 -0.0068 -0.0054 7 6 3.6205 -1.1602 0.0001 8 6 4.4080 -2.4450 -0.0002 9 6 2.2255 -1.2045 0.0051 10 6 1.5170 -2.4995 0.0107 11 8 1.2290 -3.0302 1.0660 12 7 1.1895 -3.0935 -1.1538 13 6 0.4869 -4.3790 -1.1482 14 1 -0.0660 -4.5571 -0.2259 15 6 1.3669 -5.5661 -1.5801 16 6 0.9126 -5.2835 -3.0235 17 1 1.5549 -4.5813 -3.5549 18 7 0.6264 -6.4940 -3.7976 19 6 1.4815 -6.8893 -4.7915 20 1 2.3666 -6.3084 -5.0050 21 6 1.2101 -8.0359 -5.5252 22 7 0.1311 -8.7436 -5.2653 23 14 2.3761 -8.5747 -6.8815 24 1 3.7218 -8.8270 -6.3062 25 1 1.8648 -9.8201 -7.5081 26 1 2.4691 -7.5057 -7.9079 27 6 -0.3316 -4.6365 -2.4139 28 6 -1.0619 -3.4989 -3.1283 29 6 -2.0836 -4.5568 -3.5834 30 6 -1.6638 -5.3849 -2.3554 31 1 -0.3633 0.0049 1.0277 32 1 -0.3633 0.8875 -0.5181 33 1 -0.3633 -0.8924 -0.5096 34 1 1.6937 2.1313 -0.0005 35 1 4.5039 2.6421 -0.8967 36 1 4.5938 -2.7572 -1.0279 37 1 5.3586 -2.2887 0.5096 38 1 3.8411 -3.2188 0.5177 39 1 1.4191 -2.6699 -1.9958 40 1 1.0235 -6.5262 -1.1950 41 1 2.4320 -5.4008 -1.4180 42 1 -0.1687 -7.0155 -3.6060 43 1 -0.0583 -9.5451 -5.7778 44 1 -0.4925 -3.0598 -3.9476 45 1 -1.4772 -2.7524 -2.4514 46 1 -3.1165 -4.2109 -3.5436 47 1 -1.8305 -5.0270 -4.5337 48 1 -2.2482 -5.1684 -1.4612 49 1 -1.5751 -6.4523 -2.5571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078820553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:11 Heat of formation + Delta-G solvation = 11.374372 kcal Electronic energy + Delta-G solvation = -30873.963115 eV Core-core repulsion = 26802.921043 eV Total energy + Delta-G solvation = -4071.042072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 6.41 seconds Orbital eigenvalues (eV) -41.28692 -40.47968 -38.95841 -37.39451 -35.07345 -34.63962 -34.08526 -32.57864 -31.74118 -29.87428 -28.41099 -28.00981 -25.51422 -24.95206 -24.17478 -23.90731 -22.21228 -21.64720 -21.07952 -20.10709 -18.79101 -18.24987 -17.74714 -17.51520 -16.92902 -16.23755 -15.91556 -15.26314 -15.08374 -14.73944 -14.45011 -14.43910 -14.11084 -13.90637 -13.65084 -13.59256 -13.39765 -13.12051 -12.67196 -12.60155 -12.45996 -12.41649 -12.18096 -12.05924 -11.94136 -11.83399 -11.74579 -11.39879 -10.90969 -10.86483 -10.66065 -10.33201 -10.23552 -10.12703 -9.91304 -9.88440 -9.74202 -9.62175 -9.43834 -9.11337 -8.88837 -8.78130 -7.01724 -5.83806 -3.12545 0.44622 0.79721 2.43439 2.88570 3.19215 3.31830 3.39384 3.44604 3.45185 4.11777 4.17840 4.48472 4.53548 4.67827 4.73199 4.84840 4.97266 4.97553 5.04291 5.15249 5.19515 5.20097 5.23145 5.25106 5.39490 5.40414 5.54449 5.64161 5.66091 5.75923 5.81852 5.83333 5.90852 5.95534 6.01014 6.06648 6.09076 6.12657 6.26220 6.36850 6.42619 6.53096 6.58917 6.83775 6.87775 6.99756 7.07821 7.46873 7.54721 7.63407 8.12085 8.34933 9.46574 10.03408 10.38084 11.38273 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.002847 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.911922 B = 9832.692052 C =10817.054049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.013 3.987 3 C -0.198 4.198 4 C 0.331 3.669 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.198 3.802 8 C -0.116 4.116 9 C -0.191 4.191 10 C 0.574 3.426 11 O -0.530 6.530 12 N -0.693 5.693 13 C 0.127 3.873 14 H 0.097 0.903 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.075 0.925 18 N -0.707 5.707 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.131 4.131 30 C -0.109 4.109 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.403 0.597 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.402 0.598 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 20.188 8.468 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.219 4.219 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.059 3.941 8 C -0.173 4.173 9 C -0.196 4.196 10 C 0.358 3.642 11 O -0.406 6.406 12 N -0.342 5.342 13 C 0.022 3.978 14 H 0.115 0.885 15 C -0.216 4.216 16 C 0.079 3.921 17 H 0.093 0.907 18 N -0.346 5.346 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.124 4.124 28 C -0.164 4.164 29 C -0.168 4.168 30 C -0.147 4.147 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.261 0.739 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.236 0.764 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.219 19.749 9.646 22.013 hybrid contribution -0.198 -0.074 -1.506 1.521 sum 1.020 19.675 8.140 21.316 Atomic orbital electron populations 1.20949 0.89243 1.04014 1.03849 1.20206 0.96972 0.90832 0.91532 1.21860 0.93706 0.99337 1.06966 1.19257 0.87032 0.85054 0.93414 1.84729 1.76033 1.34069 1.34049 1.67009 1.41834 0.97823 1.16006 1.21078 0.89157 0.93190 0.90660 1.20915 1.00619 0.91587 1.04165 1.20738 0.94890 0.94428 1.09581 1.17816 0.78414 0.83631 0.84344 1.90827 1.53913 1.64925 1.30945 1.45666 1.58207 1.22330 1.07958 1.21793 0.94614 0.82568 0.98854 0.88465 1.24282 0.99002 0.97228 1.01128 1.21274 0.91594 0.89574 0.89634 0.90676 1.42386 1.28095 1.25285 1.38795 1.19227 1.02948 1.06342 1.09188 0.91244 1.24736 0.97841 0.98008 0.99996 1.69641 1.26686 1.18236 1.43291 0.86291 0.80281 0.77782 0.81953 1.21228 1.21702 1.21276 1.23599 0.95559 0.97883 0.95323 1.22641 0.98289 0.95991 0.99429 1.22741 0.97619 0.97206 0.99266 1.22451 0.94029 1.00390 0.97869 0.89569 0.90174 0.90420 0.83633 0.73860 0.89195 0.89592 0.89835 0.76400 0.89472 0.92166 0.77677 0.93362 0.91763 0.91039 0.92494 0.89158 0.90767 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.69 36.01 0.35 -0.63 16 2 C 0.01 0.12 5.95 -103.96 -0.62 -0.49 16 3 C -0.20 -1.75 9.73 -39.34 -0.38 -2.13 16 4 C 0.33 3.44 7.74 -16.96 -0.13 3.31 16 5 O -0.48 -4.07 13.55 -18.20 -0.25 -4.32 16 6 N -0.51 -6.21 10.29 -9.20 -0.09 -6.30 16 7 C 0.20 2.37 6.82 -82.18 -0.56 1.81 16 8 C -0.12 -1.24 9.78 36.01 0.35 -0.89 16 9 C -0.19 -2.25 5.65 -104.82 -0.59 -2.84 16 10 C 0.57 7.59 4.33 -12.44 -0.05 7.54 16 11 O -0.53 -8.92 16.70 5.29 0.09 -8.83 16 12 N -0.69 -8.40 5.04 -54.38 -0.27 -8.67 16 13 C 0.13 1.80 4.12 -67.48 -0.28 1.52 16 14 H 0.10 1.48 7.46 -51.93 -0.39 1.10 16 15 C -0.17 -2.89 7.68 -25.76 -0.20 -3.08 16 16 C 0.19 3.44 4.27 -67.49 -0.29 3.16 16 17 H 0.08 1.34 8.10 -51.93 -0.42 0.91 16 18 N -0.71 -16.34 5.32 -52.99 -0.28 -16.63 16 19 C -0.25 -6.45 9.97 -15.06 -0.15 -6.60 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.12 -1.78 0.92 -154.71 -0.14 -1.92 16 28 C -0.13 -1.64 7.49 -26.28 -0.20 -1.83 16 29 C -0.13 -1.90 8.08 -25.74 -0.21 -2.11 16 30 C -0.11 -1.65 7.47 -26.28 -0.20 -1.84 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.08 0.67 7.18 -51.93 -0.37 0.30 16 34 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.40 1.31 9.06 45.56 0.41 1.72 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.98 7.06 -51.93 -0.37 0.61 16 39 H 0.40 4.28 8.60 -40.82 -0.35 3.93 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.39 9.53 5.92 -40.82 -0.24 9.29 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.39 6.42 -51.93 -0.33 1.06 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -32.59 403.54 -9.10 -41.68 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.68 Total: 14.01 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.39 Total: -7.40 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.07 Total: -57.85 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.16 Total: -13.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.59 -9.10 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078820553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.059 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.41 seconds