Wall clock time and date at job start Wed Apr 1 2020 04:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37990 * 120.82589 * 2 1 4 4 C 1.39128 * 119.26721 * 180.27642 * 3 2 1 5 5 O 1.35502 * 119.52570 * 179.72010 * 4 3 2 6 6 N 1.32436 * 120.94993 * 359.69570 * 4 3 2 7 7 C 1.31638 * 121.79570 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.68287 * 179.97438 * 7 6 4 9 9 C 1.39565 * 120.63146 * 0.02562 * 7 6 4 10 10 C 1.47613 * 120.50237 * 179.97438 * 9 7 6 11 11 O 1.21584 * 119.99363 * 89.99973 * 10 9 7 12 12 N 1.34774 * 120.00357 * 270.00303 * 10 9 7 13 13 C 1.46503 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94438 * 23.59083 * 13 12 10 15 15 C 1.53947 * 113.66246 * 252.18508 * 13 12 10 16 16 C 1.53940 * 87.29448 * 270.26168 * 15 13 12 17 17 H 1.09000 * 113.66946 * 89.74182 * 16 15 13 18 18 N 1.46505 * 113.66236 * 220.79726 * 16 15 13 19 19 C 1.36943 * 119.99990 * 252.18832 * 18 16 15 20 20 H 1.08002 * 119.99513 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00205 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47165 * 59.99877 * 23 21 19 25 25 H 1.48495 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47136 * 299.99989 * 23 21 19 27 27 C 1.52905 * 86.78782 * 335.26706 * 16 15 13 28 28 C 1.52904 * 121.14213 * 150.61642 * 27 16 15 29 29 C 1.53957 * 86.78105 * 100.82198 * 28 27 16 30 30 C 1.52914 * 121.13770 * 259.18710 * 27 16 15 31 31 H 1.09005 * 109.46881 * 270.27370 * 1 2 3 32 32 H 1.08998 * 109.46904 * 30.27377 * 1 2 3 33 33 H 1.08994 * 109.47160 * 150.27290 * 1 2 3 34 34 H 1.08004 * 120.36488 * 359.97013 * 3 2 1 35 35 H 0.96701 * 113.99661 * 269.98344 * 5 4 3 36 36 H 1.09001 * 109.47562 * 270.02198 * 8 7 6 37 37 H 1.09001 * 109.47189 * 30.02687 * 8 7 6 38 38 H 1.09003 * 109.46931 * 150.02080 * 8 7 6 39 39 H 0.97003 * 119.99736 * 359.97438 * 12 10 9 40 40 H 1.09003 * 113.57959 * 155.65686 * 15 13 12 41 41 H 1.09003 * 113.57772 * 24.86438 * 15 13 12 42 42 H 0.96996 * 120.00019 * 72.18452 * 18 16 15 43 43 H 0.97001 * 119.99798 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.66244 * 346.35405 * 28 27 16 45 45 H 1.08997 * 113.66842 * 215.29629 * 28 27 16 46 46 H 1.08998 * 113.57948 * 139.33665 * 29 28 27 47 47 H 1.09000 * 113.57875 * 270.13309 * 29 28 27 48 48 H 1.08993 * 113.66382 * 144.70253 * 30 27 16 49 49 H 1.08992 * 113.66018 * 13.64281 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1471 -0.0059 5 8 4.3045 2.3076 -0.0116 6 7 4.2549 -0.0068 -0.0054 7 6 3.6205 -1.1602 0.0001 8 6 4.4080 -2.4450 -0.0002 9 6 2.2255 -1.2045 0.0051 10 6 1.5170 -2.4995 0.0107 11 8 1.2290 -3.0302 1.0660 12 7 1.1895 -3.0935 -1.1538 13 6 0.4869 -4.3790 -1.1482 14 1 -0.0660 -4.5571 -0.2259 15 6 1.3669 -5.5661 -1.5801 16 6 0.9126 -5.2835 -3.0235 17 1 1.5549 -4.5813 -3.5549 18 7 0.6264 -6.4940 -3.7976 19 6 1.4815 -6.8893 -4.7915 20 1 2.3666 -6.3084 -5.0050 21 6 1.2101 -8.0359 -5.5252 22 7 0.1311 -8.7436 -5.2653 23 14 2.3761 -8.5747 -6.8815 24 1 3.7218 -8.8270 -6.3062 25 1 1.8648 -9.8201 -7.5081 26 1 2.4691 -7.5057 -7.9079 27 6 -0.3316 -4.6365 -2.4139 28 6 -1.0619 -3.4989 -3.1283 29 6 -2.0836 -4.5568 -3.5834 30 6 -1.6638 -5.3849 -2.3554 31 1 -0.3633 0.0049 1.0277 32 1 -0.3633 0.8875 -0.5181 33 1 -0.3633 -0.8924 -0.5096 34 1 1.6937 2.1313 -0.0005 35 1 4.5039 2.6421 -0.8967 36 1 4.5938 -2.7572 -1.0279 37 1 5.3586 -2.2887 0.5096 38 1 3.8411 -3.2188 0.5177 39 1 1.4191 -2.6699 -1.9958 40 1 1.0235 -6.5262 -1.1950 41 1 2.4320 -5.4008 -1.4180 42 1 -0.1687 -7.0155 -3.6060 43 1 -0.0583 -9.5451 -5.7778 44 1 -0.4925 -3.0598 -3.9476 45 1 -1.4772 -2.7524 -2.4514 46 1 -3.1165 -4.2109 -3.5436 47 1 -1.8305 -5.0270 -4.5337 48 1 -2.2482 -5.1684 -1.4612 49 1 -1.5751 -6.4523 -2.5571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078820553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:09 Heat of formation + Delta-G solvation = -13.183093 kcal Electronic energy + Delta-G solvation = -30875.028007 eV Core-core repulsion = 26802.921043 eV Total energy + Delta-G solvation = -4072.106963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.24179 -41.58592 -40.00182 -38.13959 -36.35182 -35.76406 -35.37767 -33.89888 -32.80050 -31.58439 -29.07300 -28.86856 -26.70105 -26.54263 -25.51300 -24.97846 -23.65305 -22.41727 -22.15151 -21.30310 -19.65025 -19.48532 -19.14654 -18.35627 -18.28303 -17.35337 -16.79134 -16.69065 -16.33556 -16.12406 -15.65920 -15.41885 -15.20658 -15.16758 -14.79442 -14.30691 -14.26591 -14.11581 -13.97096 -13.77048 -13.44236 -13.36943 -13.29327 -13.15658 -13.08948 -12.93732 -12.83906 -12.73426 -12.61403 -12.49173 -12.18958 -11.90009 -11.85176 -11.40121 -11.28878 -11.05218 -10.88084 -10.67312 -10.62354 -10.53008 -9.96498 -9.90261 -8.93317 -7.91864 -5.18869 -0.33316 0.04829 1.38954 1.48685 1.50469 1.56300 1.95675 2.36334 2.57339 2.58036 3.37589 3.39231 3.44267 3.49690 3.56914 3.73595 3.79773 3.92883 3.99465 4.04739 4.15154 4.19071 4.28555 4.30207 4.39480 4.52906 4.57333 4.61847 4.65972 4.66456 4.76184 4.82059 4.88245 4.90915 4.97173 5.03190 5.09209 5.10680 5.13876 5.16023 5.20895 5.26808 5.41360 5.51014 5.60628 5.64188 5.68568 6.30216 6.44203 6.55499 6.80047 7.09005 7.37606 8.15264 8.37985 9.31073 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.002847 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.911922 B = 9832.692052 C =10817.054049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.014 3.986 3 C -0.188 4.188 4 C 0.327 3.673 5 O -0.488 6.488 6 N -0.532 5.532 7 C 0.186 3.814 8 C -0.113 4.113 9 C -0.208 4.208 10 C 0.585 3.415 11 O -0.568 6.568 12 N -0.680 5.680 13 C 0.149 3.851 14 H 0.093 0.907 15 C -0.173 4.173 16 C 0.178 3.822 17 H 0.080 0.920 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.072 4.072 22 N -0.968 5.968 23 Si 0.967 3.033 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.277 1.277 27 C -0.112 4.112 28 C -0.108 4.108 29 C -0.131 4.131 30 C -0.112 4.112 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.178 0.822 35 H 0.425 0.575 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.055 0.945 48 H 0.098 0.902 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 23.543 8.548 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.006 3.994 3 C -0.208 4.208 4 C 0.149 3.851 5 O -0.299 6.299 6 N -0.253 5.253 7 C 0.048 3.952 8 C -0.170 4.170 9 C -0.213 4.213 10 C 0.370 3.630 11 O -0.447 6.447 12 N -0.329 5.329 13 C 0.043 3.957 14 H 0.111 0.889 15 C -0.215 4.215 16 C 0.068 3.932 17 H 0.098 0.902 18 N -0.357 5.357 19 C -0.373 4.373 20 H 0.094 0.906 21 C -0.265 4.265 22 N -0.619 5.619 23 Si 0.796 3.204 24 H -0.207 1.207 25 H -0.226 1.226 26 H -0.203 1.203 27 C -0.114 4.114 28 C -0.146 4.146 29 C -0.168 4.168 30 C -0.150 4.150 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.195 0.805 35 H 0.287 0.713 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.211 0.789 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.132 23.180 9.711 25.158 hybrid contribution -0.105 -0.994 -1.467 1.775 sum 1.026 22.187 8.244 23.691 Atomic orbital electron populations 1.21024 0.87667 1.05094 1.04191 1.20490 0.98083 0.90336 0.90498 1.22128 0.93046 1.00249 1.05408 1.19540 0.87886 0.85006 0.92676 1.84684 1.75909 1.33165 1.36101 1.67000 1.42620 0.98451 1.17204 1.21138 0.89408 0.93450 0.91201 1.20885 1.00511 0.91118 1.04527 1.20638 0.94858 0.94240 1.11594 1.17975 0.77498 0.83818 0.83665 1.90810 1.55511 1.66065 1.32303 1.45513 1.57653 1.21361 1.08409 1.21442 0.93531 0.82489 0.98280 0.88859 1.24140 0.99521 0.97727 1.00101 1.21573 0.93888 0.88234 0.89520 0.90167 1.42535 1.27389 1.26877 1.38940 1.19635 1.02982 1.05762 1.08875 0.90600 1.25464 0.99553 0.98738 1.02702 1.69799 1.28655 1.18716 1.44687 0.85313 0.78451 0.77019 0.79583 1.20738 1.22597 1.20346 1.23351 0.94475 0.98645 0.94964 1.22618 0.96976 0.95448 0.99530 1.22650 0.99509 0.97493 0.97190 1.22506 0.94651 0.98548 0.99267 0.89516 0.87246 0.91164 0.80464 0.71288 0.88375 0.89220 0.91248 0.75166 0.91308 0.92049 0.78899 0.94169 0.91337 0.88090 0.90147 0.92648 0.88343 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.69 71.24 0.69 -0.83 16 2 C 0.01 0.23 5.95 -19.43 -0.12 0.12 16 3 C -0.19 -2.69 9.73 22.42 0.22 -2.47 16 4 C 0.33 6.02 7.74 84.82 0.66 6.67 16 5 O -0.49 -6.96 13.55 -88.03 -1.19 -8.15 16 6 N -0.53 -12.30 10.29 -295.88 -3.04 -15.35 16 7 C 0.19 4.29 6.82 42.91 0.29 4.58 16 8 C -0.11 -2.41 9.78 71.24 0.70 -1.71 16 9 C -0.21 -4.58 5.65 -19.99 -0.11 -4.69 16 10 C 0.58 14.77 4.33 86.72 0.38 15.15 16 11 O -0.57 -18.81 16.70 -3.98 -0.07 -18.88 16 12 N -0.68 -15.39 5.04 -444.24 -2.24 -17.63 16 13 C 0.15 4.05 4.12 45.28 0.19 4.24 16 14 H 0.09 2.74 7.46 -2.39 -0.02 2.72 16 15 C -0.17 -5.76 7.68 31.23 0.24 -5.52 16 16 C 0.18 6.38 4.27 45.28 0.19 6.57 16 17 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 18 N -0.72 -34.04 5.32 -321.57 -1.71 -35.76 16 19 C -0.24 -12.77 9.97 84.03 0.84 -11.94 16 20 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.97 -57.92 13.06 21.65 0.28 -57.63 16 23 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C -0.11 -3.18 0.92 -52.31 -0.05 -3.23 16 28 C -0.11 -2.53 7.49 30.89 0.23 -2.29 16 29 C -0.13 -3.64 8.08 31.23 0.25 -3.39 16 30 C -0.11 -3.30 7.47 30.89 0.23 -3.07 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.11 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.07 0.98 7.18 -2.39 -0.02 0.97 16 34 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.42 1.56 9.06 -74.06 -0.67 0.88 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.65 7.06 -2.39 -0.02 1.63 16 39 H 0.41 7.85 8.60 -92.71 -0.80 7.06 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.38 19.35 5.92 -92.71 -0.55 18.80 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.05 1.71 6.42 -2.39 -0.02 1.70 16 Total: -1.00 -72.26 403.54 -1.67 -73.93 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -1.01 Total: 37.64 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.29 Total: -5.36 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -6.71 Total: -126.36 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -1.26 Total: -27.03 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.26 -1.67 -73.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078820553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.744 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds