Wall clock time and date at job start Wed Apr 1 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35451 * 126.77350 * 2 1 4 4 C 1.41378 * 103.98442 * 180.14017 * 3 2 1 5 5 C 1.50699 * 126.80458 * 179.88837 * 4 3 2 6 6 C 1.50703 * 109.47289 * 125.90690 * 5 4 3 7 7 O 1.21280 * 119.99443 * 356.73418 * 6 5 4 8 8 N 1.34770 * 119.99985 * 176.72758 * 6 5 4 9 9 C 1.48147 * 127.83348 * 183.37353 * 8 6 5 10 10 C 1.54678 * 104.50218 * 219.37620 * 9 8 6 11 11 H 1.09000 * 111.34806 * 216.19074 * 10 9 8 12 12 C 1.53694 * 105.09657 * 336.35257 * 10 9 8 13 13 H 1.08996 * 111.41827 * 239.54021 * 12 10 9 14 14 C 1.48150 * 127.84020 * 3.37370 * 8 6 5 15 15 C 1.53281 * 109.40923 * 116.50883 * 12 10 9 16 16 H 1.09000 * 110.93451 * 182.00437 * 15 12 10 17 17 C 1.53786 * 108.88237 * 60.05758 * 15 12 10 18 18 C 1.52937 * 109.53261 * 299.59104 * 17 15 12 19 19 C 1.52974 * 108.65924 * 93.94765 * 10 9 8 20 20 H 1.09005 * 110.13594 * 65.54918 * 19 10 9 21 21 C 1.53604 * 109.12441 * 305.15404 * 19 10 9 22 22 N 1.47635 * 106.74194 * 300.19758 * 21 19 10 23 23 C 1.36934 * 122.06552 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99728 * 185.45678 * 23 22 21 25 25 C 1.38807 * 120.00195 * 5.45726 * 23 22 21 26 26 N 1.31622 * 119.99897 * 200.05072 * 25 23 22 27 27 Si 1.86799 * 119.99893 * 20.04883 * 25 23 22 28 28 H 1.48505 * 109.47206 * 174.12198 * 27 25 23 29 29 H 1.48501 * 109.47166 * 54.12314 * 27 25 23 30 30 H 1.48500 * 109.47132 * 294.12074 * 27 25 23 31 31 N 1.30178 * 106.39531 * 359.63317 * 4 3 2 32 32 O 1.20923 * 111.60319 * 0.23836 * 31 4 3 33 33 H 1.09001 * 109.47232 * 180.29194 * 1 2 3 34 34 H 1.08998 * 109.47388 * 300.29394 * 1 2 3 35 35 H 1.09001 * 109.47682 * 60.29177 * 1 2 3 36 36 H 1.07998 * 128.00835 * 0.02562 * 3 2 1 37 37 H 1.09004 * 109.47168 * 5.90999 * 5 4 3 38 38 H 1.09004 * 109.47678 * 245.91363 * 5 4 3 39 39 H 1.09001 * 110.41092 * 338.31482 * 9 8 6 40 40 H 1.09001 * 110.41238 * 100.63762 * 9 8 6 41 41 H 1.09001 * 110.40393 * 21.64724 * 14 8 6 42 42 H 1.09000 * 110.51066 * 259.26944 * 14 8 6 43 43 H 1.09004 * 109.57641 * 179.51292 * 17 15 12 44 44 H 1.09000 * 109.36823 * 59.53852 * 17 15 12 45 45 H 1.09005 * 109.38094 * 240.44610 * 18 17 15 46 46 H 1.09004 * 109.38110 * 120.77521 * 18 17 15 47 47 H 1.08992 * 110.00249 * 180.88050 * 21 19 10 48 48 H 1.09005 * 109.98973 * 59.49821 * 21 19 10 49 49 H 0.97000 * 120.00677 * 3.31755 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0034 5 6 4.9210 1.3001 -0.0071 6 6 5.7791 0.8361 1.1415 7 8 5.3518 0.0141 1.9242 8 7 7.0214 1.3345 1.2989 9 6 8.0306 0.9553 2.3149 10 6 8.6920 2.2930 2.7219 11 1 9.7565 2.1657 2.9184 12 6 8.4630 3.2325 1.5273 13 1 9.4069 3.5862 1.1125 14 6 7.6874 2.3857 0.4951 15 6 7.5826 4.4083 1.9655 16 1 7.3750 5.0730 1.1269 17 6 8.2951 5.1693 3.0960 18 6 8.5173 4.2311 4.2832 19 6 7.9740 2.8378 3.9580 20 1 8.1346 2.1745 4.8080 21 6 6.4705 2.9421 3.6615 22 7 6.3260 3.8598 2.5140 23 6 5.1028 4.1774 1.9867 24 1 5.0402 4.7814 1.0935 25 6 3.9434 3.7231 2.6000 26 7 2.8163 3.6736 1.9221 27 14 3.9829 3.1821 4.3875 28 1 2.6025 2.8792 4.8436 29 1 4.5522 4.2707 5.2218 30 1 4.8253 1.9662 4.5182 31 7 3.4763 -0.7563 0.0030 32 8 2.3095 -1.0736 0.0049 33 1 -0.3634 -1.0277 0.0052 34 1 -0.3634 0.5184 0.8873 35 1 -0.3634 0.5093 -0.8926 36 1 2.0344 2.1271 0.0004 37 1 4.7173 2.3657 0.0989 38 1 5.4441 1.1220 -0.9467 39 1 7.5485 0.4890 3.1741 40 1 8.7703 0.2812 1.8829 41 1 6.9463 2.9978 -0.0189 42 1 8.3746 1.9391 -0.2235 43 1 7.6820 6.0139 3.4106 44 1 9.2574 5.5335 2.7362 45 1 8.0003 4.6259 5.1579 46 1 9.5842 4.1630 4.4957 47 1 5.9465 3.3440 4.5285 48 1 6.0721 1.9602 3.4059 49 1 2.8055 3.9086 0.9811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087343347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:03 Heat of formation + Delta-G solvation = 79.973497 kcal Electronic energy + Delta-G solvation = -33797.565365 eV Core-core repulsion = 29729.497974 eV Total energy + Delta-G solvation = -4068.067390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -44.22970 -40.89829 -38.33468 -35.51399 -33.98962 -33.45924 -32.80719 -31.85810 -30.73072 -30.51895 -28.62236 -27.27742 -27.04029 -25.11210 -23.98761 -22.50287 -22.37650 -21.05809 -20.73955 -20.07755 -18.49961 -17.66862 -17.10880 -16.79160 -16.58397 -16.29484 -16.15947 -15.40104 -15.03714 -14.69877 -14.18226 -13.85193 -13.60664 -13.30613 -13.20681 -12.94906 -12.87651 -12.46655 -12.44897 -12.29269 -12.20057 -12.09278 -11.89647 -11.79672 -11.63111 -11.47570 -11.34994 -11.28408 -10.94354 -10.75634 -10.47359 -10.32124 -9.89178 -9.78148 -9.62867 -9.49394 -9.29539 -9.05285 -8.76077 -8.62673 -8.44851 -8.06355 -6.96598 -6.27228 -3.14000 2.13595 2.88714 3.40419 3.53948 3.56718 3.60626 3.75977 3.77304 4.67076 4.72233 4.76717 4.82557 4.95410 5.03282 5.05859 5.36924 5.43548 5.46582 5.49364 5.56665 5.59911 5.61534 5.64549 5.66884 5.70070 5.73248 5.81284 5.84028 5.97287 6.00154 6.08055 6.10842 6.13252 6.15226 6.20082 6.24933 6.33395 6.37393 6.41338 6.46774 6.52942 6.59030 6.69662 6.79168 6.84167 6.91424 6.99496 7.77665 8.17635 8.37007 8.89139 8.95639 9.05406 9.63003 10.22302 11.20160 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.005246 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.578760 B = 5336.144170 C = 6198.619924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.064 4.064 3 C -0.186 4.186 4 C 0.041 3.959 5 C -0.054 4.054 6 C 0.563 3.437 7 O -0.538 6.538 8 N -0.606 5.606 9 C 0.112 3.888 10 C -0.083 4.083 11 H 0.079 0.921 12 C -0.112 4.112 13 H 0.079 0.921 14 C 0.120 3.880 15 C 0.180 3.820 16 H 0.073 0.927 17 C -0.131 4.131 18 C -0.104 4.104 19 C -0.094 4.094 20 H 0.068 0.932 21 C 0.129 3.871 22 N -0.597 5.597 23 C -0.335 4.335 24 H 0.076 0.924 25 C -0.004 4.004 26 N -0.913 5.913 27 Si 1.054 2.946 28 H -0.309 1.309 29 H -0.308 1.308 30 H -0.284 1.284 31 N -0.355 5.355 32 O 0.091 5.909 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.020 0.980 48 H 0.061 0.939 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 -1.424 -4.720 9.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 C -0.207 4.207 4 C -0.118 4.118 5 C -0.095 4.095 6 C 0.352 3.648 7 O -0.414 6.414 8 N -0.340 5.340 9 C -0.012 4.012 10 C -0.102 4.102 11 H 0.098 0.902 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.003 4.003 15 C 0.072 3.928 16 H 0.091 0.909 17 C -0.171 4.171 18 C -0.142 4.142 19 C -0.113 4.113 20 H 0.086 0.914 21 C 0.005 3.995 22 N -0.322 5.322 23 C -0.462 4.462 24 H 0.094 0.906 25 C -0.205 4.205 26 N -0.555 5.555 27 Si 0.891 3.109 28 H -0.238 1.238 29 H -0.237 1.237 30 H -0.211 1.211 31 N -0.058 5.058 32 O 0.023 5.977 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.196 0.804 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.079 0.921 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.024 -3.495 -3.096 8.434 hybrid contribution 0.817 1.707 -0.795 2.053 sum 7.841 -1.788 -3.892 8.934 Atomic orbital electron populations 1.20191 0.84680 1.03541 1.03802 1.24304 0.96071 0.86401 1.05926 1.22555 0.90737 1.01476 1.05976 1.22741 0.96411 0.89595 1.03017 1.19953 0.89693 1.02577 0.97234 1.19574 0.79303 0.80020 0.85880 1.90690 1.71039 1.34305 1.45397 1.48499 1.13031 1.39501 1.32981 1.22295 0.90152 0.95966 0.92739 1.21929 0.98487 0.94457 0.95343 0.90243 1.22624 0.98521 0.97274 0.94877 0.90259 1.22203 0.95744 0.89074 0.93312 1.20715 0.86282 0.91575 0.94267 0.90911 1.22147 0.99375 0.98561 0.97016 1.21380 0.99296 0.95126 0.98355 1.21444 0.96612 0.96558 0.96653 0.91365 1.22015 0.92718 0.94944 0.89848 1.44740 1.01665 1.51294 1.34509 1.20164 0.82796 1.33522 1.09714 0.90642 1.25394 0.91595 0.98633 1.04885 1.70990 1.27545 1.47476 1.09441 0.84086 0.73072 0.76229 0.77516 1.23818 1.23736 1.21114 1.73754 0.96517 1.16563 1.18995 1.84745 1.11452 1.33395 1.68145 0.90742 0.89400 0.89875 0.80436 0.84716 0.89185 0.90406 0.92180 0.89941 0.92654 0.92121 0.93118 0.92677 0.92915 0.96316 0.92090 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.45 36.00 0.38 -0.43 16 2 C -0.06 -1.14 7.49 -35.30 -0.26 -1.41 16 3 C -0.19 -3.75 11.05 -39.38 -0.44 -4.19 16 4 C 0.04 0.89 6.10 -82.10 -0.50 0.38 16 5 C -0.05 -1.09 5.28 -29.03 -0.15 -1.25 16 6 C 0.56 12.31 6.92 -10.99 -0.08 12.23 16 7 O -0.54 -13.97 15.50 5.56 0.09 -13.88 16 8 N -0.61 -11.11 1.98 -169.11 -0.33 -11.45 16 9 C 0.11 1.82 5.81 -2.25 -0.01 1.81 16 10 C -0.08 -1.20 3.18 -89.39 -0.28 -1.48 16 11 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.11 -1.59 3.20 -89.37 -0.29 -1.87 16 13 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 14 C 0.12 1.80 6.01 -2.39 -0.01 1.79 16 15 C 0.18 3.06 2.91 -66.73 -0.19 2.87 16 16 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 17 C -0.13 -2.03 5.88 -26.35 -0.15 -2.19 16 18 C -0.10 -1.58 5.66 -26.74 -0.15 -1.73 16 19 C -0.09 -1.59 2.69 -90.30 -0.24 -1.83 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 21 C 0.13 2.81 2.81 -3.11 -0.01 2.80 16 22 N -0.60 -12.77 1.99 -162.88 -0.32 -13.10 16 23 C -0.33 -8.29 9.14 -15.06 -0.14 -8.43 16 24 H 0.08 1.95 8.03 -52.48 -0.42 1.53 16 25 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 26 N -0.91 -25.29 13.25 55.49 0.74 -24.56 16 27 Si 1.05 27.84 24.38 -169.99 -4.14 23.70 16 28 H -0.31 -8.57 7.11 56.52 0.40 -8.16 16 29 H -0.31 -7.95 6.92 56.52 0.39 -7.56 16 30 H -0.28 -7.49 5.14 56.52 0.29 -7.20 16 31 N -0.35 -7.78 11.48 33.42 0.38 -7.40 16 32 O 0.09 1.80 11.20 17.19 0.19 2.00 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.18 3.63 6.86 -52.49 -0.36 3.27 16 37 H 0.14 2.87 6.86 -51.93 -0.36 2.52 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.45 6.98 -51.93 -0.36 1.09 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.32 7.07 -51.93 -0.37 0.95 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.02 0.47 3.63 -51.93 -0.19 0.29 16 48 H 0.06 1.52 3.31 -51.93 -0.17 1.35 16 49 H 0.26 6.84 8.03 -40.82 -0.33 6.51 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.48 363.59 -7.95 -40.42 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.38 Total: 1.91 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.64 Total: -3.12 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.46 Total: -56.50 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.28 Total: -11.89 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.14 Total: 23.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.48 -7.95 -40.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087343347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.398 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds