Wall clock time and date at job start Wed Apr 1 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35451 * 126.77350 * 2 1 4 4 C 1.41378 * 103.98442 * 180.14017 * 3 2 1 5 5 C 1.50699 * 126.80458 * 179.88837 * 4 3 2 6 6 C 1.50703 * 109.47289 * 125.90690 * 5 4 3 7 7 O 1.21280 * 119.99443 * 356.73418 * 6 5 4 8 8 N 1.34770 * 119.99985 * 176.72758 * 6 5 4 9 9 C 1.48147 * 127.83348 * 183.37353 * 8 6 5 10 10 C 1.54678 * 104.50218 * 219.37620 * 9 8 6 11 11 H 1.09000 * 111.34806 * 216.19074 * 10 9 8 12 12 C 1.53694 * 105.09657 * 336.35257 * 10 9 8 13 13 H 1.08996 * 111.41827 * 239.54021 * 12 10 9 14 14 C 1.48150 * 127.84020 * 3.37370 * 8 6 5 15 15 C 1.53281 * 109.40923 * 116.50883 * 12 10 9 16 16 H 1.09000 * 110.93451 * 182.00437 * 15 12 10 17 17 C 1.53786 * 108.88237 * 60.05758 * 15 12 10 18 18 C 1.52937 * 109.53261 * 299.59104 * 17 15 12 19 19 C 1.52974 * 108.65924 * 93.94765 * 10 9 8 20 20 H 1.09005 * 110.13594 * 65.54918 * 19 10 9 21 21 C 1.53604 * 109.12441 * 305.15404 * 19 10 9 22 22 N 1.47635 * 106.74194 * 300.19758 * 21 19 10 23 23 C 1.36934 * 122.06552 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99728 * 185.45678 * 23 22 21 25 25 C 1.38807 * 120.00195 * 5.45726 * 23 22 21 26 26 N 1.31622 * 119.99897 * 200.05072 * 25 23 22 27 27 Si 1.86799 * 119.99893 * 20.04883 * 25 23 22 28 28 H 1.48505 * 109.47206 * 174.12198 * 27 25 23 29 29 H 1.48501 * 109.47166 * 54.12314 * 27 25 23 30 30 H 1.48500 * 109.47132 * 294.12074 * 27 25 23 31 31 N 1.30178 * 106.39531 * 359.63317 * 4 3 2 32 32 O 1.20923 * 111.60319 * 0.23836 * 31 4 3 33 33 H 1.09001 * 109.47232 * 180.29194 * 1 2 3 34 34 H 1.08998 * 109.47388 * 300.29394 * 1 2 3 35 35 H 1.09001 * 109.47682 * 60.29177 * 1 2 3 36 36 H 1.07998 * 128.00835 * 0.02562 * 3 2 1 37 37 H 1.09004 * 109.47168 * 5.90999 * 5 4 3 38 38 H 1.09004 * 109.47678 * 245.91363 * 5 4 3 39 39 H 1.09001 * 110.41092 * 338.31482 * 9 8 6 40 40 H 1.09001 * 110.41238 * 100.63762 * 9 8 6 41 41 H 1.09001 * 110.40393 * 21.64724 * 14 8 6 42 42 H 1.09000 * 110.51066 * 259.26944 * 14 8 6 43 43 H 1.09004 * 109.57641 * 179.51292 * 17 15 12 44 44 H 1.09000 * 109.36823 * 59.53852 * 17 15 12 45 45 H 1.09005 * 109.38094 * 240.44610 * 18 17 15 46 46 H 1.09004 * 109.38110 * 120.77521 * 18 17 15 47 47 H 1.08992 * 110.00249 * 180.88050 * 21 19 10 48 48 H 1.09005 * 109.98973 * 59.49821 * 21 19 10 49 49 H 0.97000 * 120.00677 * 3.31755 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0034 5 6 4.9210 1.3001 -0.0071 6 6 5.7791 0.8361 1.1415 7 8 5.3518 0.0141 1.9242 8 7 7.0214 1.3345 1.2989 9 6 8.0306 0.9553 2.3149 10 6 8.6920 2.2930 2.7219 11 1 9.7565 2.1657 2.9184 12 6 8.4630 3.2325 1.5273 13 1 9.4069 3.5862 1.1125 14 6 7.6874 2.3857 0.4951 15 6 7.5826 4.4083 1.9655 16 1 7.3750 5.0730 1.1269 17 6 8.2951 5.1693 3.0960 18 6 8.5173 4.2311 4.2832 19 6 7.9740 2.8378 3.9580 20 1 8.1346 2.1745 4.8080 21 6 6.4705 2.9421 3.6615 22 7 6.3260 3.8598 2.5140 23 6 5.1028 4.1774 1.9867 24 1 5.0402 4.7814 1.0935 25 6 3.9434 3.7231 2.6000 26 7 2.8163 3.6736 1.9221 27 14 3.9829 3.1821 4.3875 28 1 2.6025 2.8792 4.8436 29 1 4.5522 4.2707 5.2218 30 1 4.8253 1.9662 4.5182 31 7 3.4763 -0.7563 0.0030 32 8 2.3095 -1.0736 0.0049 33 1 -0.3634 -1.0277 0.0052 34 1 -0.3634 0.5184 0.8873 35 1 -0.3634 0.5093 -0.8926 36 1 2.0344 2.1271 0.0004 37 1 4.7173 2.3657 0.0989 38 1 5.4441 1.1220 -0.9467 39 1 7.5485 0.4890 3.1741 40 1 8.7703 0.2812 1.8829 41 1 6.9463 2.9978 -0.0189 42 1 8.3746 1.9391 -0.2235 43 1 7.6820 6.0139 3.4106 44 1 9.2574 5.5335 2.7362 45 1 8.0003 4.6259 5.1579 46 1 9.5842 4.1630 4.4957 47 1 5.9465 3.3440 4.5285 48 1 6.0721 1.9602 3.4059 49 1 2.8055 3.9086 0.9811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087343347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:01 Heat of formation + Delta-G solvation = 59.713089 kcal Electronic energy + Delta-G solvation = -33798.443922 eV Core-core repulsion = 29729.497974 eV Total energy + Delta-G solvation = -4068.945948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -45.81018 -42.26832 -39.94584 -37.00985 -35.60411 -35.20934 -34.20409 -33.26095 -32.52450 -31.93756 -30.10163 -28.56543 -28.38073 -26.77414 -25.43792 -24.17463 -23.95885 -22.52152 -21.99868 -21.50973 -20.04578 -19.53568 -18.68266 -18.30943 -18.11840 -17.78197 -17.58234 -17.02790 -16.49049 -16.18742 -15.72298 -15.63119 -15.20694 -14.93289 -14.50696 -14.32030 -14.05643 -13.96819 -13.91514 -13.88459 -13.64730 -13.56506 -13.44754 -13.17337 -13.08274 -12.95668 -12.72205 -12.62483 -12.48113 -12.11986 -12.01471 -11.90474 -11.70863 -11.36360 -11.12860 -11.06912 -10.88302 -10.71159 -10.65603 -10.34250 -10.10907 -9.49357 -8.82807 -8.35142 -5.14027 0.63235 1.30601 1.33976 1.40516 1.56468 1.77733 2.18608 2.36020 2.55429 3.20327 3.23635 3.40908 3.51045 3.64463 3.67205 3.76676 3.98067 4.15600 4.19151 4.20945 4.29800 4.30649 4.38389 4.39953 4.43929 4.46674 4.56021 4.56858 4.72468 4.74114 4.75061 4.82710 4.89693 4.91273 4.95022 4.97976 5.00669 5.04642 5.10548 5.13668 5.21463 5.29035 5.31610 5.34719 5.43846 5.55339 5.70728 5.85505 6.39046 6.69191 7.04917 7.30264 7.41377 7.73593 8.27874 9.14142 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.005246 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.578760 B = 5336.144170 C = 6198.619924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.046 4.046 3 C -0.217 4.217 4 C 0.025 3.975 5 C -0.047 4.047 6 C 0.554 3.446 7 O -0.594 6.594 8 N -0.607 5.607 9 C 0.104 3.896 10 C -0.070 4.070 11 H 0.130 0.870 12 C -0.099 4.099 13 H 0.133 0.867 14 C 0.113 3.887 15 C 0.167 3.833 16 H 0.072 0.928 17 C -0.126 4.126 18 C -0.100 4.100 19 C -0.094 4.094 20 H 0.074 0.926 21 C 0.128 3.872 22 N -0.605 5.605 23 C -0.294 4.294 24 H 0.066 0.934 25 C -0.043 4.043 26 N -0.942 5.942 27 Si 1.077 2.923 28 H -0.335 1.335 29 H -0.307 1.307 30 H -0.294 1.294 31 N -0.382 5.382 32 O 0.088 5.912 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.170 0.830 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.034 0.966 46 H 0.095 0.905 47 H -0.012 1.012 48 H 0.027 0.973 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 -0.804 -6.033 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C -0.238 4.238 4 C -0.134 4.134 5 C -0.087 4.087 6 C 0.343 3.657 7 O -0.475 6.475 8 N -0.339 5.339 9 C -0.018 4.018 10 C -0.089 4.089 11 H 0.148 0.852 12 C -0.119 4.119 13 H 0.151 0.849 14 C -0.009 4.009 15 C 0.061 3.939 16 H 0.090 0.910 17 C -0.165 4.165 18 C -0.137 4.137 19 C -0.113 4.113 20 H 0.092 0.908 21 C 0.003 3.997 22 N -0.330 5.330 23 C -0.423 4.423 24 H 0.084 0.916 25 C -0.241 4.241 26 N -0.587 5.587 27 Si 0.917 3.083 28 H -0.266 1.266 29 H -0.237 1.237 30 H -0.223 1.223 31 N -0.087 5.087 32 O 0.022 5.978 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.187 0.813 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.053 0.947 46 H 0.114 0.886 47 H 0.005 0.995 48 H 0.044 0.956 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.018 -2.825 -4.416 12.202 hybrid contribution -0.372 1.552 -0.396 1.645 sum 10.646 -1.273 -4.812 11.752 Atomic orbital electron populations 1.20473 0.80688 1.05760 1.05128 1.25162 0.98027 0.85063 1.02671 1.22579 0.91066 1.01768 1.08425 1.23077 0.97438 0.89846 1.02989 1.19900 0.89553 1.01040 0.98226 1.19810 0.80451 0.79735 0.85657 1.90646 1.72567 1.37016 1.47240 1.48621 1.12305 1.39421 1.33581 1.22547 0.89964 0.97830 0.91481 1.22005 1.00481 0.92682 0.93758 0.85177 1.22625 0.99662 0.95263 0.94388 0.84928 1.22537 0.95938 0.88496 0.93959 1.21098 0.84866 0.93095 0.94813 0.91021 1.22073 1.00751 0.97429 0.96218 1.21386 1.01478 0.93409 0.97464 1.21489 0.92960 0.98358 0.98498 0.90798 1.21760 0.96441 0.92877 0.88615 1.44850 1.02342 1.51399 1.34438 1.20056 0.84041 1.30201 1.08015 0.91633 1.25506 0.92603 1.00581 1.05394 1.70948 1.28183 1.50079 1.09454 0.83749 0.70937 0.75713 0.77875 1.26616 1.23667 1.22255 1.73715 0.97547 1.16850 1.20545 1.84697 1.11233 1.33953 1.67962 0.88085 0.89334 0.87001 0.81290 0.86487 0.86281 0.93866 0.88819 0.91532 0.88474 0.94637 0.88751 0.94678 0.88638 0.99537 0.95570 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.51 10.45 71.23 0.74 -0.77 16 2 C -0.05 -1.67 7.49 25.04 0.19 -1.48 16 3 C -0.22 -9.16 11.05 22.40 0.25 -8.91 16 4 C 0.02 1.11 6.10 43.58 0.27 1.38 16 5 C -0.05 -1.95 5.28 29.10 0.15 -1.80 16 6 C 0.55 24.83 6.92 87.66 0.61 25.44 16 7 O -0.59 -32.46 15.50 -3.03 -0.05 -32.51 16 8 N -0.61 -21.48 1.98 -807.33 -1.60 -23.07 16 9 C 0.10 3.13 5.81 86.63 0.50 3.64 16 10 C -0.07 -1.67 3.18 -10.00 -0.03 -1.70 16 11 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 12 C -0.10 -2.24 3.20 -9.99 -0.03 -2.27 16 13 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 14 C 0.11 2.95 6.01 86.54 0.52 3.47 16 15 C 0.17 5.12 2.91 45.13 0.13 5.25 16 16 H 0.07 2.22 8.00 -2.39 -0.02 2.21 16 17 C -0.13 -3.33 5.88 30.84 0.18 -3.15 16 18 C -0.10 -2.63 5.66 30.59 0.17 -2.46 16 19 C -0.09 -2.93 2.69 -10.59 -0.03 -2.96 16 20 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 21 C 0.13 5.63 2.81 86.37 0.24 5.87 16 22 N -0.61 -25.63 1.99 -669.22 -1.33 -26.96 16 23 C -0.29 -14.88 9.14 84.03 0.77 -14.11 16 24 H 0.07 3.46 8.03 -2.91 -0.02 3.43 16 25 C -0.04 -2.44 5.47 84.86 0.46 -1.97 16 26 N -0.94 -54.80 13.25 21.65 0.29 -54.52 16 27 Si 1.08 60.16 24.38 68.60 1.67 61.83 16 28 H -0.33 -19.83 7.11 99.48 0.71 -19.12 16 29 H -0.31 -16.58 6.92 99.48 0.69 -15.89 16 30 H -0.29 -16.72 5.14 99.48 0.51 -16.21 16 31 N -0.38 -17.39 11.48 -49.55 -0.57 -17.96 16 32 O 0.09 3.60 11.20 71.68 0.80 4.40 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.17 7.38 6.86 -2.91 -0.02 7.36 16 37 H 0.12 5.23 6.86 -2.38 -0.02 5.21 16 38 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 39 H 0.04 1.61 6.98 -2.39 -0.02 1.59 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 1.98 7.07 -2.39 -0.02 1.96 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 47 H -0.01 -0.61 3.63 -2.39 -0.01 -0.62 16 48 H 0.03 1.37 3.31 -2.38 -0.01 1.36 16 49 H 0.26 14.34 8.03 -92.71 -0.74 13.60 16 Total: -1.00 -79.83 363.59 5.10 -74.73 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.78 Total: 10.60 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.10 Total: 3.46 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -3.21 Total: -122.51 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: 0.76 Total: -28.11 kcal Atomic # 14 Polarization: 60.16 SS G_CDS: 1.67 Total: 61.83 kcal Total: -79.83 5.10 -74.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087343347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.442 kcal (2) G-P(sol) polarization free energy of solvation -79.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds