Wall clock time and date at job start Wed Apr 1 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 116.99748 * 2 1 4 4 C 1.38846 * 120.40746 * 359.97438 * 3 2 1 5 5 N 1.31880 * 121.00234 * 180.02562 * 4 3 2 6 6 C 1.31681 * 121.94342 * 359.97438 * 5 4 3 7 7 C 1.39529 * 120.68735 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.52914 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99588 * 136.15639 * 8 7 6 10 10 N 1.34770 * 120.00307 * 316.16319 * 8 7 6 11 11 C 1.47763 * 125.82248 * 185.76163 * 10 8 7 12 12 C 1.56202 * 104.00618 * 154.06139 * 11 10 8 13 13 H 1.09001 * 113.91127 * 161.26575 * 12 11 10 14 14 C 1.52881 * 106.67082 * 286.46484 * 12 11 10 15 15 C 1.51602 * 111.55456 * 168.35363 * 14 12 11 16 16 N 1.44330 * 113.11431 * 320.91175 * 15 14 12 17 17 C 1.36933 * 116.35458 * 187.25602 * 16 15 14 18 18 H 1.07999 * 119.99948 * 148.23043 * 17 16 15 19 19 C 1.38806 * 120.00366 * 328.22526 * 17 16 15 20 20 N 1.31621 * 119.99953 * 335.95167 * 19 17 16 21 21 Si 1.86797 * 120.00270 * 155.94832 * 19 17 16 22 22 H 1.48502 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47433 * 120.00051 * 21 19 17 24 24 H 1.48500 * 109.47148 * 240.00372 * 21 19 17 25 25 C 1.43992 * 127.28756 * 7.28484 * 16 15 14 26 26 C 1.49957 * 116.09823 * 2.47857 * 25 16 15 27 27 H 1.09001 * 108.82486 * 141.05362 * 26 25 16 28 28 C 1.47623 * 125.81740 * 6.06710 * 10 8 7 29 29 C 1.38840 * 120.40566 * 179.97438 * 3 2 1 30 30 C 1.50706 * 120.87988 * 359.96154 * 29 3 2 31 31 H 1.09008 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47309 * 300.00008 * 1 2 3 33 33 H 1.09001 * 109.47024 * 60.00151 * 1 2 3 34 34 H 1.08005 * 119.49991 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.65828 * 180.02562 * 6 5 4 36 36 H 1.08996 * 110.49775 * 272.80406 * 11 10 8 37 37 H 1.09000 * 110.49794 * 35.48442 * 11 10 8 38 38 H 1.08994 * 109.06982 * 47.81743 * 14 12 11 39 39 H 1.08996 * 109.00209 * 288.84320 * 14 12 11 40 40 H 1.08997 * 108.75688 * 199.97527 * 15 14 12 41 41 H 1.08998 * 108.75541 * 81.84857 * 15 14 12 42 42 H 0.97008 * 120.00067 * 179.97438 * 20 19 17 43 43 H 1.09005 * 108.15523 * 240.75945 * 25 16 15 44 44 H 1.09001 * 108.00214 * 124.07441 * 25 16 15 45 45 H 1.08991 * 110.08344 * 299.82085 * 28 10 8 46 46 H 1.08998 * 110.07986 * 61.33051 * 28 10 8 47 47 H 1.09001 * 109.46983 * 264.26990 * 30 29 3 48 48 H 1.08994 * 109.46994 * 24.26617 * 30 29 3 49 49 H 1.08998 * 109.47256 * 144.26860 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 -0.0010 6 6 3.1951 3.6893 -0.0006 7 6 4.0197 2.5637 0.0000 8 6 5.4910 2.7106 -0.0001 9 8 6.1711 2.0157 0.7295 10 7 6.0780 3.6148 -0.8088 11 6 7.5329 3.7870 -1.0015 12 6 7.6542 4.4075 -2.4298 13 1 8.6098 4.8965 -2.6194 14 6 7.3544 3.2845 -3.4229 15 6 7.1620 3.8201 -4.8280 16 7 6.4365 5.0673 -4.8646 17 6 6.0907 5.5332 -6.1049 18 1 5.1824 6.1031 -6.2337 19 6 6.9076 5.2734 -7.1966 20 7 8.1868 5.0211 -7.0161 21 14 6.1917 5.2816 -8.9219 22 1 4.7405 5.5894 -8.8542 23 1 6.8796 6.3137 -9.7384 24 1 6.3856 3.9475 -9.5446 25 6 6.0361 5.8767 -3.7430 26 6 6.4681 5.3914 -2.3915 27 1 6.7556 6.2501 -1.7848 28 6 5.3772 4.6063 -1.6485 29 6 3.4319 1.2936 0.0005 30 6 4.2809 0.0485 0.0020 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2196 2.3226 -0.0005 35 1 3.6364 4.6750 -0.0006 36 1 7.9394 4.4660 -0.2520 37 1 8.0401 2.8231 -0.9600 38 1 6.4469 2.7670 -3.1118 39 1 8.1848 2.5785 -3.4216 40 1 6.6165 3.0801 -5.4135 41 1 8.1411 3.9708 -5.2827 42 1 8.7576 4.8391 -7.7790 43 1 4.9483 5.9479 -3.7466 44 1 6.4402 6.8785 -3.8892 45 1 4.7282 4.0999 -2.3628 46 1 4.7912 5.2793 -1.0226 47 1 4.5699 -0.1930 1.0249 48 1 3.7118 -0.7798 -0.4199 49 1 5.1751 0.2177 -0.5979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088012495.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:56 Heat of formation + Delta-G solvation = 1.778582 kcal Electronic energy + Delta-G solvation = -31394.646706 eV Core-core repulsion = 27323.188530 eV Total energy + Delta-G solvation = -4071.458176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.29844 -40.21163 -38.67044 -37.93419 -35.67867 -33.94707 -32.78001 -31.67658 -30.98611 -30.18606 -28.25274 -27.96311 -27.66444 -25.76203 -24.37129 -23.19218 -22.58833 -22.00978 -21.45476 -19.80040 -18.23916 -18.03815 -17.57950 -17.03119 -16.67216 -16.49318 -16.20289 -15.69756 -15.40711 -14.93701 -14.63410 -14.26915 -14.02538 -14.01004 -13.69097 -13.51846 -13.21369 -13.02926 -12.99056 -12.81730 -12.67407 -12.40994 -12.34363 -12.27786 -11.91762 -11.82139 -11.79334 -11.24499 -11.14779 -10.79217 -10.62954 -10.38142 -10.27171 -10.20622 -9.81340 -9.68767 -9.66007 -9.57585 -9.50190 -8.72477 -8.61693 -8.47297 -6.57622 -5.65059 -3.33958 0.49668 0.97911 2.49820 2.76240 3.05202 3.35710 3.44632 3.47576 3.51336 4.10173 4.23169 4.32618 4.47256 4.50495 4.59788 4.72023 4.76140 4.78510 4.98479 5.00803 5.07530 5.14545 5.25970 5.31907 5.38588 5.50512 5.52510 5.55887 5.57847 5.69249 5.79569 5.87387 5.92683 5.94831 5.99276 6.12550 6.19022 6.22667 6.30428 6.52296 6.57609 6.65652 6.78021 6.83224 6.85848 7.26140 7.45690 7.60963 7.78861 7.90082 8.04205 8.53754 9.27669 9.96197 10.28167 11.20662 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.003144 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.188725 B = 8904.651930 C = 9926.680844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.069 3.931 4 C 0.037 3.963 5 N -0.452 5.452 6 C 0.097 3.903 7 C -0.141 4.141 8 C 0.581 3.419 9 O -0.532 6.532 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.082 4.082 13 H 0.104 0.896 14 C -0.120 4.120 15 C 0.156 3.844 16 N -0.584 5.584 17 C -0.271 4.271 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.885 5.885 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.175 3.825 26 C -0.099 4.099 27 H 0.075 0.925 28 C 0.103 3.897 29 C -0.021 4.021 30 C -0.107 4.107 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.077 0.923 42 H 0.253 0.747 43 H 0.014 0.986 44 H 0.026 0.974 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -6.822 15.745 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.021 3.979 4 C -0.121 4.121 5 N -0.161 5.161 6 C -0.062 4.062 7 C -0.146 4.146 8 C 0.369 3.631 9 O -0.410 6.410 10 N -0.339 5.339 11 C -0.013 4.013 12 C -0.101 4.101 13 H 0.122 0.878 14 C -0.158 4.158 15 C 0.031 3.969 16 N -0.309 5.309 17 C -0.401 4.401 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.049 3.951 26 C -0.118 4.118 27 H 0.094 0.906 28 C -0.019 4.019 29 C -0.030 4.030 30 C -0.163 4.163 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.665 -6.782 16.147 20.505 hybrid contribution -0.217 -0.540 -1.022 1.176 sum -10.882 -7.322 15.125 20.020 Atomic orbital electron populations 1.23151 0.77883 1.04507 1.01646 1.86088 1.21606 1.25514 1.88617 1.19686 0.92180 0.86090 0.99905 1.23059 1.00689 0.87093 1.01212 1.67558 1.11786 1.25907 1.10899 1.23063 0.88543 0.98416 0.96144 1.20674 0.94703 0.93927 1.05297 1.17512 0.86362 0.79443 0.79829 1.90786 1.64693 1.45351 1.40168 1.48596 1.08452 1.34030 1.42828 1.22753 0.79948 1.01383 0.97258 1.22299 0.98928 0.96306 0.92564 0.87803 1.21569 1.00297 0.96699 0.97217 1.20176 0.99651 0.85807 0.91289 1.42625 1.66194 1.20312 1.01737 1.19110 1.03025 1.33454 0.84508 0.91899 1.25056 0.94367 1.01188 0.98417 1.70009 1.03015 1.50280 1.29550 0.86333 0.78936 0.77318 0.84838 1.20142 1.21725 1.21519 1.19368 0.96726 0.93944 0.85036 1.21529 0.94588 0.97684 0.97986 0.90644 1.22442 0.95979 0.90276 0.93171 1.19687 0.90914 0.95498 0.96933 1.20694 0.98611 0.93302 1.03681 0.87765 0.92361 0.92228 0.82110 0.81643 0.91358 0.90267 0.93428 0.92502 0.96628 0.90549 0.93718 0.96814 0.95634 0.90563 0.91174 0.89771 0.90701 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -3.07 9.58 -19.50 -0.19 -3.25 16 3 C 0.07 0.80 6.68 -39.13 -0.26 0.54 16 4 C 0.04 0.41 10.21 -17.31 -0.18 0.23 16 5 N -0.45 -5.77 10.34 -12.79 -0.13 -5.90 16 6 C 0.10 1.23 9.73 -17.14 -0.17 1.07 16 7 C -0.14 -1.95 5.51 -104.84 -0.58 -2.52 16 8 C 0.58 8.79 6.77 -12.33 -0.08 8.71 16 9 O -0.53 -9.24 15.86 5.32 0.08 -9.16 16 10 N -0.61 -8.65 2.80 -170.51 -0.48 -9.13 16 11 C 0.11 1.50 6.23 -1.63 -0.01 1.49 16 12 C -0.08 -1.28 3.78 -88.36 -0.33 -1.61 16 13 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 14 C -0.12 -2.17 4.98 -27.50 -0.14 -2.31 16 15 C 0.16 3.60 5.27 -5.91 -0.03 3.57 16 16 N -0.58 -14.07 3.20 -179.58 -0.58 -14.64 16 17 C -0.27 -7.30 9.21 -15.06 -0.14 -7.44 16 18 H 0.06 1.69 7.94 -52.49 -0.42 1.27 16 19 C 0.01 0.28 4.94 -17.43 -0.09 0.19 16 20 N -0.89 -25.01 11.09 55.49 0.62 -24.40 16 21 Si 0.90 21.37 29.62 -169.99 -5.03 16.34 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.18 3.47 5.67 -6.89 -0.04 3.43 16 26 C -0.10 -1.52 2.68 -91.23 -0.24 -1.76 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 C 0.10 1.43 4.20 -3.13 -0.01 1.42 16 29 C -0.02 -0.28 5.96 -103.75 -0.62 -0.90 16 30 C -0.11 -1.31 8.73 36.01 0.31 -1.00 16 31 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 33 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 34 H 0.16 1.25 6.30 -52.48 -0.33 0.92 16 35 H 0.17 1.84 5.54 -52.49 -0.29 1.55 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 38 H 0.05 0.87 6.77 -51.93 -0.35 0.52 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.08 2.01 5.78 -51.93 -0.30 1.71 16 42 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.01 0.28 7.78 -51.93 -0.40 -0.13 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.19 7.83 -51.93 -0.41 0.78 16 46 H 0.07 0.80 5.89 -51.93 -0.31 0.50 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.07 0.82 7.46 -51.93 -0.39 0.44 16 49 H 0.07 1.01 7.09 -51.93 -0.37 0.64 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -31.83 379.32 -8.89 -40.72 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.29 Total: -0.51 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.61 Total: 4.22 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.57 Total: -54.07 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.10 Total: -12.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.83 -8.89 -40.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088012495.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.498 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds