Wall clock time and date at job start Wed Apr 1 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 116.99748 * 2 1 4 4 C 1.38846 * 120.40746 * 359.97438 * 3 2 1 5 5 N 1.31880 * 121.00234 * 180.02562 * 4 3 2 6 6 C 1.31681 * 121.94342 * 359.97438 * 5 4 3 7 7 C 1.39529 * 120.68735 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.52914 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99588 * 136.15639 * 8 7 6 10 10 N 1.34770 * 120.00307 * 316.16319 * 8 7 6 11 11 C 1.47763 * 125.82248 * 185.76163 * 10 8 7 12 12 C 1.56202 * 104.00618 * 154.06139 * 11 10 8 13 13 H 1.09001 * 113.91127 * 161.26575 * 12 11 10 14 14 C 1.52881 * 106.67082 * 286.46484 * 12 11 10 15 15 C 1.51602 * 111.55456 * 168.35363 * 14 12 11 16 16 N 1.44330 * 113.11431 * 320.91175 * 15 14 12 17 17 C 1.36933 * 116.35458 * 187.25602 * 16 15 14 18 18 H 1.07999 * 119.99948 * 148.23043 * 17 16 15 19 19 C 1.38806 * 120.00366 * 328.22526 * 17 16 15 20 20 N 1.31621 * 119.99953 * 335.95167 * 19 17 16 21 21 Si 1.86797 * 120.00270 * 155.94832 * 19 17 16 22 22 H 1.48502 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47433 * 120.00051 * 21 19 17 24 24 H 1.48500 * 109.47148 * 240.00372 * 21 19 17 25 25 C 1.43992 * 127.28756 * 7.28484 * 16 15 14 26 26 C 1.49957 * 116.09823 * 2.47857 * 25 16 15 27 27 H 1.09001 * 108.82486 * 141.05362 * 26 25 16 28 28 C 1.47623 * 125.81740 * 6.06710 * 10 8 7 29 29 C 1.38840 * 120.40566 * 179.97438 * 3 2 1 30 30 C 1.50706 * 120.87988 * 359.96154 * 29 3 2 31 31 H 1.09008 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47309 * 300.00008 * 1 2 3 33 33 H 1.09001 * 109.47024 * 60.00151 * 1 2 3 34 34 H 1.08005 * 119.49991 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.65828 * 180.02562 * 6 5 4 36 36 H 1.08996 * 110.49775 * 272.80406 * 11 10 8 37 37 H 1.09000 * 110.49794 * 35.48442 * 11 10 8 38 38 H 1.08994 * 109.06982 * 47.81743 * 14 12 11 39 39 H 1.08996 * 109.00209 * 288.84320 * 14 12 11 40 40 H 1.08997 * 108.75688 * 199.97527 * 15 14 12 41 41 H 1.08998 * 108.75541 * 81.84857 * 15 14 12 42 42 H 0.97008 * 120.00067 * 179.97438 * 20 19 17 43 43 H 1.09005 * 108.15523 * 240.75945 * 25 16 15 44 44 H 1.09001 * 108.00214 * 124.07441 * 25 16 15 45 45 H 1.08991 * 110.08344 * 299.82085 * 28 10 8 46 46 H 1.08998 * 110.07986 * 61.33051 * 28 10 8 47 47 H 1.09001 * 109.46983 * 264.26990 * 30 29 3 48 48 H 1.08994 * 109.46994 * 24.26617 * 30 29 3 49 49 H 1.08998 * 109.47256 * 144.26860 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 -0.0010 6 6 3.1951 3.6893 -0.0006 7 6 4.0197 2.5637 0.0000 8 6 5.4910 2.7106 -0.0001 9 8 6.1711 2.0157 0.7295 10 7 6.0780 3.6148 -0.8088 11 6 7.5329 3.7870 -1.0015 12 6 7.6542 4.4075 -2.4298 13 1 8.6098 4.8965 -2.6194 14 6 7.3544 3.2845 -3.4229 15 6 7.1620 3.8201 -4.8280 16 7 6.4365 5.0673 -4.8646 17 6 6.0907 5.5332 -6.1049 18 1 5.1824 6.1031 -6.2337 19 6 6.9076 5.2734 -7.1966 20 7 8.1868 5.0211 -7.0161 21 14 6.1917 5.2816 -8.9219 22 1 4.7405 5.5894 -8.8542 23 1 6.8796 6.3137 -9.7384 24 1 6.3856 3.9475 -9.5446 25 6 6.0361 5.8767 -3.7430 26 6 6.4681 5.3914 -2.3915 27 1 6.7556 6.2501 -1.7848 28 6 5.3772 4.6063 -1.6485 29 6 3.4319 1.2936 0.0005 30 6 4.2809 0.0485 0.0020 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2196 2.3226 -0.0005 35 1 3.6364 4.6750 -0.0006 36 1 7.9394 4.4660 -0.2520 37 1 8.0401 2.8231 -0.9600 38 1 6.4469 2.7670 -3.1118 39 1 8.1848 2.5785 -3.4216 40 1 6.6165 3.0801 -5.4135 41 1 8.1411 3.9708 -5.2827 42 1 8.7576 4.8391 -7.7790 43 1 4.9483 5.9479 -3.7466 44 1 6.4402 6.8785 -3.8892 45 1 4.7282 4.0999 -2.3628 46 1 4.7912 5.2793 -1.0226 47 1 4.5699 -0.1930 1.0249 48 1 3.7118 -0.7798 -0.4199 49 1 5.1751 0.2177 -0.5979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088012495.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:55 Heat of formation + Delta-G solvation = -17.833739 kcal Electronic energy + Delta-G solvation = -31395.497160 eV Core-core repulsion = 27323.188530 eV Total energy + Delta-G solvation = -4072.308630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.27691 -41.32545 -39.80982 -38.89810 -37.31136 -34.89056 -34.33359 -33.19978 -32.35297 -31.55684 -29.39997 -28.84210 -28.51153 -27.25485 -25.78734 -24.52497 -23.62909 -23.41116 -22.84912 -20.83800 -19.48479 -19.18365 -18.88993 -18.47226 -17.59494 -17.53218 -17.03077 -16.92805 -16.77006 -16.51362 -15.82066 -15.63135 -15.46074 -15.13634 -14.86035 -14.75637 -14.70815 -14.26111 -14.00316 -13.94773 -13.87954 -13.69560 -13.55575 -13.35636 -12.99716 -12.95106 -12.89554 -12.74791 -12.54731 -12.39566 -12.20074 -12.06511 -11.85634 -11.52315 -11.46454 -11.20978 -11.17290 -10.64820 -10.55288 -10.50303 -9.73737 -9.54959 -8.60287 -7.69009 -5.43546 -0.44604 0.06134 1.43869 1.44068 1.47740 1.57646 1.76018 2.21734 2.50971 2.57785 3.14765 3.21732 3.36984 3.39720 3.46583 3.53517 3.63330 3.76471 3.84776 3.94810 4.11284 4.16002 4.26559 4.34840 4.39525 4.40793 4.48449 4.54499 4.58134 4.61147 4.65580 4.66769 4.76244 4.78148 4.89737 4.94479 5.00651 5.03307 5.06329 5.07357 5.19958 5.27048 5.30384 5.34968 5.41033 5.69708 5.92338 6.11374 6.31221 6.46509 6.69941 6.90489 7.23142 8.05754 8.25969 9.11715 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.003144 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.188725 B = 8904.651930 C = 9926.680844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.072 3.928 4 C 0.041 3.959 5 N -0.466 5.466 6 C 0.094 3.906 7 C -0.156 4.156 8 C 0.583 3.417 9 O -0.560 6.560 10 N -0.605 5.605 11 C 0.117 3.883 12 C -0.079 4.079 13 H 0.105 0.895 14 C -0.108 4.108 15 C 0.165 3.835 16 N -0.596 5.596 17 C -0.286 4.286 18 H 0.060 0.940 19 C -0.038 4.038 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.269 1.269 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.173 3.827 26 C -0.095 4.095 27 H 0.107 0.893 28 C 0.112 3.888 29 C -0.043 4.043 30 C -0.099 4.099 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.180 0.820 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.065 0.935 40 H -0.016 1.016 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -6.532 17.183 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.024 3.976 4 C -0.116 4.116 5 N -0.175 5.175 6 C -0.064 4.064 7 C -0.161 4.161 8 C 0.372 3.628 9 O -0.440 6.440 10 N -0.337 5.337 11 C -0.005 4.005 12 C -0.098 4.098 13 H 0.123 0.877 14 C -0.146 4.146 15 C 0.039 3.961 16 N -0.320 5.320 17 C -0.416 4.416 18 H 0.077 0.923 19 C -0.236 4.236 20 N -0.557 5.557 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.048 3.952 26 C -0.114 4.114 27 H 0.125 0.875 28 C -0.010 4.010 29 C -0.052 4.052 30 C -0.156 4.156 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.211 0.789 35 H 0.197 0.803 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.002 0.998 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.120 0.880 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.531 -6.474 17.593 22.549 hybrid contribution 0.236 -0.681 -1.486 1.651 sum -12.296 -7.155 16.107 21.490 Atomic orbital electron populations 1.23513 0.75537 1.06366 1.02855 1.86086 1.24004 1.24735 1.88227 1.19705 0.91732 0.87033 0.99144 1.23570 1.02150 0.86339 0.99586 1.67619 1.11710 1.26735 1.11410 1.23228 0.88635 0.98611 0.95959 1.20635 0.93965 0.94701 1.06849 1.17695 0.86888 0.78893 0.79359 1.90765 1.65462 1.46321 1.41413 1.48600 1.08664 1.33970 1.42505 1.22701 0.79873 1.01608 0.96274 1.22239 0.99140 0.95497 0.92967 0.87711 1.21406 1.00624 0.97709 0.94890 1.19923 0.97229 0.85105 0.93827 1.42855 1.65936 1.20915 1.02308 1.19393 1.02894 1.33132 0.86198 0.92262 1.25746 0.94673 1.01496 1.01654 1.70145 1.03957 1.51422 1.30168 0.85407 0.78563 0.76897 0.80780 1.19303 1.21529 1.21827 1.19459 0.96799 0.92923 0.86052 1.21454 0.94906 0.99033 0.96016 0.87457 1.22368 0.95230 0.90218 0.93147 1.19891 0.92055 0.95484 0.97764 1.20605 0.97998 0.93666 1.03292 0.85771 0.90808 0.91253 0.78933 0.80322 0.88841 0.90681 0.93564 0.91591 0.99812 0.93707 0.94035 0.96310 0.96697 0.92439 0.88036 0.89935 0.89685 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.21 16 2 O -0.32 -5.74 9.58 -92.68 -0.89 -6.63 16 3 C 0.07 1.55 6.68 22.56 0.15 1.70 16 4 C 0.04 0.80 10.21 84.83 0.87 1.67 16 5 N -0.47 -10.86 10.34 -194.39 -2.01 -12.87 16 6 C 0.09 2.22 9.73 85.03 0.83 3.05 16 7 C -0.16 -4.17 5.51 -20.00 -0.11 -4.28 16 8 C 0.58 17.08 6.77 86.79 0.59 17.67 16 9 O -0.56 -19.17 15.86 -3.88 -0.06 -19.24 16 10 N -0.61 -16.20 2.80 -811.65 -2.28 -18.48 16 11 C 0.12 2.99 6.23 87.25 0.54 3.53 16 12 C -0.08 -2.37 3.78 -9.33 -0.04 -2.41 16 13 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 14 C -0.11 -3.94 4.98 30.10 0.15 -3.79 16 15 C 0.16 7.86 5.27 86.32 0.45 8.32 16 16 N -0.60 -29.15 3.20 -722.08 -2.31 -31.46 16 17 C -0.29 -15.64 9.21 84.03 0.77 -14.86 16 18 H 0.06 3.22 7.94 -2.91 -0.02 3.20 16 19 C -0.04 -2.10 4.94 84.86 0.42 -1.68 16 20 N -0.91 -52.95 11.09 21.65 0.24 -52.71 16 21 Si 0.96 44.60 29.62 68.60 2.03 46.64 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 25 C 0.17 6.72 5.67 85.87 0.49 7.21 16 26 C -0.10 -2.74 2.68 -11.19 -0.03 -2.77 16 27 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 28 C 0.11 2.86 4.20 86.36 0.36 3.23 16 29 C -0.04 -1.10 5.96 -19.30 -0.12 -1.22 16 30 C -0.10 -2.44 8.73 71.24 0.62 -1.82 16 31 H 0.12 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.42 7.67 -2.39 -0.02 0.40 16 33 H 0.07 0.47 7.67 -2.39 -0.02 0.46 16 34 H 0.19 2.33 6.30 -2.91 -0.02 2.31 16 35 H 0.18 3.52 5.54 -2.91 -0.02 3.50 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.02 7.99 -2.39 -0.02 2.00 16 38 H 0.05 1.69 6.77 -2.39 -0.02 1.67 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H -0.02 -0.86 8.12 -2.39 -0.02 -0.88 16 41 H 0.05 2.47 5.78 -2.39 -0.01 2.46 16 42 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 43 H 0.02 0.72 7.78 -2.38 -0.02 0.71 16 44 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 1.72 7.83 -2.39 -0.02 1.70 16 46 H 0.10 1.99 5.89 -2.39 -0.01 1.97 16 47 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.08 1.84 7.46 -2.39 -0.02 1.82 16 49 H 0.06 1.59 7.09 -2.39 -0.02 1.58 16 Total: -1.00 -70.54 379.32 2.76 -67.78 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.97 Total: 12.21 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 7.07 Total: 14.75 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.36 Total: -115.52 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.95 Total: -25.86 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.54 2.76 -67.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088012495.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.948 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds