Wall clock time and date at job start Wed Apr 1 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33489 * 126.83373 * 2 1 4 4 N 1.20661 * 113.16010 * 180.29948 * 3 2 1 5 5 C 1.30015 * 112.29730 * 359.75407 * 4 3 2 6 6 C 1.50705 * 127.33130 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.50018 * 8.74915 * 6 5 4 8 8 C 1.52996 * 117.50127 * 300.08606 * 6 5 4 9 9 C 1.37366 * 126.82390 * 179.88993 * 2 1 3 10 10 C 1.47388 * 128.56877 * 0.02562 * 9 2 1 11 11 O 1.21612 * 120.00192 * 269.67798 * 10 9 2 12 12 N 1.34781 * 120.00171 * 89.67057 * 10 9 2 13 13 C 1.47758 * 125.82239 * 180.02562 * 12 10 9 14 14 C 1.55960 * 104.12133 * 154.13267 * 13 12 10 15 15 H 1.09001 * 113.25972 * 161.58071 * 14 13 12 16 16 C 1.52893 * 106.48169 * 286.22177 * 14 13 12 17 17 C 1.51606 * 111.49924 * 168.42117 * 16 14 13 18 18 N 1.44276 * 113.14255 * 320.81477 * 17 16 14 19 19 C 1.36934 * 116.36721 * 187.32089 * 18 17 16 20 20 H 1.08002 * 120.00137 * 152.50023 * 19 18 17 21 21 C 1.38821 * 120.00329 * 332.49356 * 19 18 17 22 22 N 1.31612 * 119.99783 * 335.31174 * 21 19 18 23 23 Si 1.86796 * 119.99765 * 155.30734 * 21 19 18 24 24 H 1.48492 * 109.47187 * 94.87835 * 23 21 19 25 25 H 1.48508 * 109.46997 * 214.87418 * 23 21 19 26 26 H 1.48498 * 109.47359 * 334.87458 * 23 21 19 27 27 C 1.43987 * 127.27528 * 7.39398 * 18 17 16 28 28 C 1.49957 * 116.09676 * 2.42898 * 27 18 17 29 29 H 1.08998 * 108.42923 * 141.32861 * 28 27 18 30 30 C 1.47617 * 125.81574 * 0.03079 * 12 10 9 31 31 H 1.09007 * 109.47223 * 270.10915 * 1 2 3 32 32 H 1.09003 * 109.46788 * 30.10818 * 1 2 3 33 33 H 1.08997 * 109.47406 * 150.10760 * 1 2 3 34 34 H 1.09007 * 115.54519 * 154.41968 * 6 5 4 35 35 H 1.09000 * 117.49382 * 0.02562 * 7 6 5 36 36 H 1.08996 * 117.49548 * 145.01938 * 7 6 5 37 37 H 1.08991 * 117.50005 * 214.98291 * 8 6 5 38 38 H 1.08999 * 117.49506 * 359.97438 * 8 6 5 39 39 H 1.08998 * 110.49675 * 35.47142 * 13 12 10 40 40 H 1.08998 * 110.50138 * 272.79316 * 13 12 10 41 41 H 1.09002 * 109.06509 * 288.92233 * 16 14 13 42 42 H 1.08999 * 109.06395 * 47.92380 * 16 14 13 43 43 H 1.09000 * 108.75239 * 81.82412 * 17 16 14 44 44 H 1.09005 * 108.75622 * 199.94944 * 17 16 14 45 45 H 0.97006 * 120.00058 * 179.97438 * 22 21 19 46 46 H 1.09005 * 108.15964 * 240.70904 * 27 18 17 47 47 H 1.08996 * 107.99839 * 124.02446 * 27 18 17 48 48 H 1.09004 * 110.07914 * 299.83271 * 30 12 10 49 49 H 1.08995 * 110.08326 * 61.33134 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0684 0.0000 4 7 3.4796 0.7832 -0.0058 5 6 3.6746 -0.5023 -0.0055 6 6 4.9964 -1.2261 -0.0121 7 6 6.2615 -0.3888 0.1862 8 6 5.9362 -0.9701 -1.1920 9 6 2.3303 -1.0996 0.0021 10 6 1.9586 -2.5258 0.0043 11 8 1.8106 -3.1140 1.0584 12 7 1.7825 -3.1782 -1.1619 13 6 1.4105 -4.6006 -1.3095 14 6 0.7044 -4.6670 -2.6985 15 1 0.6493 -5.6766 -3.1055 16 6 -0.6707 -4.0235 -2.5172 17 6 -1.3460 -3.7707 -3.8508 18 7 -0.4337 -3.3136 -4.8708 19 6 -0.9949 -2.9170 -6.0552 20 1 -0.4956 -2.1830 -6.6703 21 6 -2.2055 -3.4584 -6.4654 22 7 -2.5783 -4.6427 -6.0290 23 14 -3.3054 -2.5059 -7.6368 24 1 -3.0397 -2.9427 -9.0309 25 1 -4.7286 -2.7642 -7.3000 26 1 -3.0227 -1.0535 -7.5107 27 6 1.0010 -3.2290 -4.7831 28 6 1.6139 -3.7193 -3.5053 29 1 2.5392 -4.2428 -3.7456 30 6 1.9287 -2.5935 -2.5094 31 1 -0.3634 0.0020 1.0277 32 1 -0.3633 0.8891 -0.5155 33 1 -0.3634 -0.8909 -0.5121 34 1 4.9850 -2.2295 0.4137 35 1 6.1376 0.6856 0.3220 36 1 7.0825 -0.8414 0.7422 37 1 6.5433 -1.8048 -1.5421 38 1 5.5982 -0.2784 -1.9636 39 1 0.7240 -4.8997 -0.5175 40 1 2.3000 -5.2305 -1.3030 41 1 -1.2978 -4.6858 -1.9204 42 1 -0.5537 -3.0755 -1.9921 43 1 -1.8142 -4.6957 -4.1874 44 1 -2.1221 -3.0177 -3.7136 45 1 -3.4244 -5.0210 -6.3153 46 1 1.2889 -2.1866 -4.9198 47 1 1.4232 -3.8063 -5.6056 48 1 1.2248 -1.7713 -2.6389 49 1 2.9489 -2.2386 -2.6548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088043932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:37:31 Heat of formation + Delta-G solvation = 83.473187 kcal Electronic energy + Delta-G solvation = -31739.989706 eV Core-core repulsion = 27672.074074 eV Total energy + Delta-G solvation = -4067.915632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -44.99813 -40.38759 -38.39722 -37.72348 -35.66563 -33.94785 -33.01230 -32.51865 -31.59257 -30.36984 -28.40765 -27.82947 -25.88123 -25.01544 -24.15562 -23.15202 -22.68901 -22.02476 -21.51184 -20.04511 -19.18052 -18.05084 -17.81605 -17.69457 -17.12424 -16.71135 -15.91731 -15.71347 -15.43449 -14.95072 -14.64773 -14.39441 -13.96326 -13.90523 -13.54941 -13.44745 -13.26278 -13.03377 -12.89933 -12.72472 -12.52452 -12.40670 -12.23703 -11.90957 -11.83912 -11.74422 -11.45924 -11.30578 -11.17336 -10.77935 -10.71046 -10.62700 -10.34616 -10.27206 -10.23253 -9.80778 -9.73746 -9.69045 -9.60296 -9.47884 -8.65898 -8.49803 -6.65222 -5.66806 -3.31776 1.18034 1.68094 2.34201 2.65908 3.07514 3.34464 3.42843 3.46233 3.52228 3.72933 4.06143 4.39773 4.47775 4.55499 4.64634 4.68192 4.70360 4.86835 4.88033 5.05874 5.18733 5.21018 5.27780 5.32573 5.34282 5.37328 5.44813 5.49015 5.52994 5.64158 5.66813 5.75062 5.77411 5.78126 5.80773 5.88006 5.92041 6.10910 6.19667 6.26926 6.48550 6.53651 6.61573 6.73619 6.80889 7.25068 7.43736 7.77658 7.88814 8.03287 8.07465 8.49363 9.25032 9.94589 10.24075 11.19121 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.003158 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.467623 B = 8862.997939 C = 9103.728539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 O 0.097 5.903 4 N -0.355 5.355 5 C 0.088 3.912 6 C -0.091 4.091 7 C -0.161 4.161 8 C -0.157 4.157 9 C -0.239 4.239 10 C 0.615 3.385 11 O -0.534 6.534 12 N -0.601 5.601 13 C 0.106 3.894 14 C -0.081 4.081 15 H 0.103 0.897 16 C -0.120 4.120 17 C 0.156 3.844 18 N -0.585 5.585 19 C -0.270 4.270 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.888 5.888 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.097 4.097 29 H 0.074 0.926 30 C 0.112 3.888 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.016 0.984 45 H 0.253 0.747 46 H 0.013 0.987 47 H 0.025 0.975 48 H 0.072 0.928 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 5.261 11.685 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 O 0.035 5.965 4 N -0.061 5.061 5 C -0.074 4.074 6 C -0.110 4.110 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.246 4.246 10 C 0.402 3.598 11 O -0.411 6.411 12 N -0.334 5.334 13 C -0.016 4.016 14 C -0.100 4.100 15 H 0.122 0.878 16 C -0.158 4.158 17 C 0.031 3.969 18 N -0.309 5.309 19 C -0.400 4.400 20 H 0.082 0.918 21 C -0.193 4.193 22 N -0.531 5.531 23 Si 0.726 3.274 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.049 3.951 28 C -0.117 4.117 29 H 0.092 0.908 30 C -0.010 4.010 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.091 0.909 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.527 5.957 12.359 18.579 hybrid contribution -0.924 -0.235 -0.641 1.149 sum 11.603 5.722 11.719 17.455 Atomic orbital electron populations 1.20506 0.82958 1.05573 1.04728 1.24618 0.96039 0.84955 0.98464 1.84531 1.11028 1.32864 1.68057 1.73530 0.95981 1.16265 1.20303 1.23657 0.94105 0.88614 1.01025 1.20244 0.84966 0.99648 1.06158 1.23035 0.96913 1.00256 0.99631 1.23075 1.01174 1.03644 0.91593 1.21715 0.92641 0.95021 1.15267 1.16407 0.76998 0.83789 0.82653 1.90813 1.51786 1.67960 1.30534 1.48602 1.67301 1.11992 1.05528 1.22753 0.99257 0.80744 0.98841 1.22251 0.95443 0.99811 0.92518 0.87844 1.21603 0.95010 0.99257 0.99949 1.20236 0.90669 1.01371 0.84620 1.42659 0.99170 1.76504 1.12600 1.19104 1.04303 1.17586 0.98973 0.91758 1.24957 1.00387 0.95209 0.98699 1.69987 1.22536 1.14023 1.46581 0.86378 0.80251 0.80119 0.80647 1.21470 1.21523 1.20426 1.19351 0.85774 0.97407 0.92527 1.21488 0.99306 0.95360 0.95497 0.90762 1.22188 1.00958 0.97307 0.80579 0.88625 0.88814 0.88614 0.85541 0.87927 0.87825 0.87590 0.88274 0.90146 0.91444 0.92413 0.93561 0.90133 0.96557 0.93682 0.96891 0.95742 0.90947 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.33 36.00 0.37 -0.40 16 2 C 0.02 0.28 7.55 -34.63 -0.26 0.02 16 3 O 0.10 1.25 11.06 18.66 0.21 1.46 16 4 N -0.35 -4.83 11.71 34.78 0.41 -4.43 16 5 C 0.09 1.16 7.08 -79.76 -0.56 0.60 16 6 C -0.09 -1.00 6.31 -91.77 -0.58 -1.58 16 7 C -0.16 -1.44 10.17 -26.69 -0.27 -1.71 16 8 C -0.16 -1.41 10.24 -26.69 -0.27 -1.68 16 9 C -0.24 -3.34 5.44 -102.89 -0.56 -3.90 16 10 C 0.62 9.41 7.64 -12.53 -0.10 9.31 16 11 O -0.53 -9.70 17.36 5.27 0.09 -9.61 16 12 N -0.60 -8.52 2.81 -170.84 -0.48 -9.00 16 13 C 0.11 1.44 6.23 -1.77 -0.01 1.43 16 14 C -0.08 -1.23 3.78 -88.49 -0.33 -1.57 16 15 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 16 C -0.12 -2.09 4.97 -27.49 -0.14 -2.22 16 17 C 0.16 3.49 5.13 -5.93 -0.03 3.46 16 18 N -0.58 -13.72 3.22 -179.62 -0.58 -14.30 16 19 C -0.27 -7.12 9.26 -15.06 -0.14 -7.26 16 20 H 0.06 1.69 7.94 -52.49 -0.42 1.27 16 21 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 22 N -0.89 -24.65 10.92 55.49 0.61 -24.04 16 23 Si 0.90 21.03 29.62 -169.99 -5.03 16.00 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.18 3.40 5.67 -6.89 -0.04 3.36 16 28 C -0.10 -1.48 2.69 -91.23 -0.25 -1.72 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 C 0.11 1.56 5.17 -3.13 -0.02 1.54 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.13 1.37 8.14 -51.92 -0.42 0.94 16 35 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.79 6.77 -51.93 -0.35 0.43 16 43 H 0.08 2.08 5.74 -51.93 -0.30 1.78 16 44 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.01 0.26 7.78 -51.93 -0.40 -0.15 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 1.10 7.83 -51.93 -0.41 0.69 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -30.86 394.80 -9.86 -40.71 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.75 Total: -0.55 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.27 Total: -2.20 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.05 Total: -51.76 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.30 Total: -8.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.86 -9.86 -40.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088043932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.186 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds