Wall clock time and date at job start Wed Apr 1 2020 04:02:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38359 * 119.40954 * 2 1
4 4 C 1.38335 * 119.45882 * 179.97438 * 3 2 1
5 5 C 1.50699 * 120.82098 * 180.02562 * 4 3 2
6 6 C 1.39990 * 118.34809 * 0.02562 * 4 3 2
7 7 C 1.47527 * 120.59291 * 180.02562 * 6 4 3
8 8 O 1.21581 * 120.00308 * 89.99526 * 7 6 4
9 9 N 1.34776 * 119.99734 * 269.99509 * 7 6 4
10 10 C 1.47756 * 125.81914 * 179.71959 * 9 7 6
11 11 C 1.56215 * 103.99751 * 154.03864 * 10 9 7
12 12 H 1.08998 * 113.17661 * 160.94220 * 11 10 9
13 13 C 1.52906 * 107.45508 * 286.25084 * 11 10 9
14 14 C 1.51599 * 111.54860 * 168.71906 * 13 11 10
15 15 N 1.44325 * 113.11930 * 320.92139 * 14 13 11
16 16 C 1.36932 * 116.35562 * 187.24199 * 15 14 13
17 17 H 1.08000 * 120.00052 * 152.51495 * 16 15 14
18 18 C 1.38814 * 120.00060 * 332.50943 * 16 15 14
19 19 N 1.31616 * 120.00250 * 335.10743 * 18 16 15
20 20 Si 1.86802 * 119.99849 * 155.10813 * 18 16 15
21 21 H 1.48502 * 109.47065 * 60.00136 * 20 18 16
22 22 H 1.48498 * 109.47238 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47023 * 300.00119 * 20 18 16
24 24 C 1.43375 * 127.11769 * 6.27486 * 15 14 13
25 25 C 1.49948 * 116.48241 * 4.32233 * 24 15 14
26 26 H 1.09002 * 108.42825 * 139.73760 * 25 24 15
27 27 C 1.47620 * 125.81856 * 0.02562 * 9 7 6
28 28 C 1.40269 * 118.80647 * 359.97394 * 6 4 3
29 29 O 1.35429 * 119.79874 * 180.02562 * 28 6 4
30 30 N 1.31885 * 119.40570 * 179.97438 * 2 1 3
31 31 H 1.09001 * 109.46889 * 270.02717 * 1 2 3
32 32 H 1.08997 * 109.47060 * 30.02643 * 1 2 3
33 33 H 1.08997 * 109.46961 * 150.02262 * 1 2 3
34 34 H 1.08005 * 120.26877 * 359.97305 * 3 2 1
35 35 H 1.09003 * 109.46567 * 90.00660 * 5 4 3
36 36 H 1.09005 * 109.47184 * 209.99951 * 5 4 3
37 37 H 1.08994 * 109.47865 * 330.00455 * 5 4 3
38 38 H 1.08998 * 110.50065 * 272.78227 * 10 9 7
39 39 H 1.08997 * 110.50180 * 35.46207 * 10 9 7
40 40 H 1.08998 * 109.05965 * 289.25341 * 13 11 10
41 41 H 1.09001 * 109.06129 * 48.25694 * 13 11 10
42 42 H 1.09004 * 108.75294 * 81.86479 * 14 13 11
43 43 H 1.09004 * 108.75467 * 200.09984 * 14 13 11
44 44 H 0.97003 * 120.00290 * 179.97438 * 19 18 16
45 45 H 1.09005 * 109.15648 * 241.52742 * 24 15 14
46 46 H 1.08996 * 106.73386 * 125.21423 * 24 15 14
47 47 H 1.08990 * 110.08615 * 299.83825 * 27 9 7
48 48 H 1.09004 * 110.07913 * 61.40206 * 27 9 7
49 49 H 0.96695 * 114.00204 * 270.00110 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2053 0.0000
4 6 3.5698 1.2065 0.0005
5 6 4.3408 2.5013 0.0011
6 6 4.2355 -0.0250 0.0005
7 6 5.7097 -0.0815 0.0016
8 8 6.3164 -0.1052 1.0550
9 7 6.3840 -0.1069 -1.1651
10 6 7.8532 -0.1573 -1.3138
11 6 8.0690 -0.8315 -2.7064
12 1 9.0618 -0.6538 -3.1197
13 6 7.7470 -2.3181 -2.5511
14 6 7.6584 -3.0121 -3.8960
15 7 7.0169 -2.2072 -4.9078
16 6 6.7631 -2.8233 -6.1041
17 1 5.9411 -2.4894 -6.7198
18 6 7.5625 -3.8770 -6.5255
19 7 8.7983 -3.9827 -6.0850
20 14 6.8844 -5.1450 -7.7179
21 1 6.4823 -4.4728 -8.9795
22 1 7.9289 -6.1598 -8.0083
23 1 5.7026 -5.8107 -7.1133
24 6 6.5999 -0.8405 -4.7903
25 6 6.9473 -0.1432 -3.5091
26 1 7.2593 0.8744 -3.7443
27 6 5.7807 -0.0827 -2.5122
28 6 3.4758 -1.2041 0.0005
29 8 4.0991 -2.4064 0.0010
30 7 2.1545 -1.1489 0.0005
31 1 -0.3633 0.0005 1.0277
32 1 -0.3633 0.8897 -0.5142
33 1 -0.3633 -0.8902 -0.5135
34 1 1.6412 2.1376 -0.0004
35 1 4.5263 2.8131 1.0290
36 1 5.2916 2.3583 -0.5124
37 1 3.7623 3.2690 -0.5126
38 1 8.2725 0.8488 -1.3051
39 1 8.2963 -0.7634 -0.5237
40 1 8.5287 -2.7915 -1.9570
41 1 6.7935 -2.4237 -2.0335
42 1 8.6662 -3.2580 -4.2305
43 1 7.0941 -3.9371 -3.7765
44 1 9.3568 -4.7192 -6.3792
45 1 5.5199 -0.7832 -4.9263
46 1 7.0692 -0.2976 -5.6107
47 1 5.1290 -0.9460 -2.6460
48 1 5.2157 0.8388 -2.6527
49 1 4.2805 -2.7558 -0.8822
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001088059832.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:02:38
Heat of formation + Delta-G solvation = -10.167748 kcal
Electronic energy + Delta-G solvation = -31808.566301 eV
Core-core repulsion = 27736.590093 eV
Total energy + Delta-G solvation = -4071.976208 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-41.22770 -40.02023 -38.25465 -37.49247 -35.69562 -34.47556 -32.61677 -31.98896
-31.58058 -30.41684 -28.84673 -28.00889 -27.56285 -25.61007 -24.03793 -23.22321
-22.22571 -21.81832 -21.38305 -19.69682 -18.58652 -17.95255 -17.57947 -17.36196
-17.05828 -16.06667 -15.75000 -15.45676 -14.94648 -14.62927 -14.44213 -14.18497
-13.93123 -13.86114 -13.63488 -13.34102 -13.27661 -13.19302 -13.02484 -12.71576
-12.68933 -12.53245 -12.35046 -12.24822 -12.07216 -11.82513 -11.79861 -11.32268
-11.17181 -10.78171 -10.63609 -10.35313 -10.32974 -10.26427 -9.83741 -9.77858
-9.70600 -9.62620 -9.54605 -9.00582 -8.65872 -8.49919 -6.65608 -5.67718
-3.32071 0.57296 0.85978 2.47724 2.87162 3.18260 3.36108 3.42912
3.43554 3.45028 4.15785 4.24032 4.36602 4.46762 4.67583 4.72844
4.80881 4.90354 5.02583 5.04600 5.10705 5.22183 5.26507 5.27752
5.31925 5.32925 5.46123 5.52164 5.52975 5.61827 5.69064 5.73390
5.77396 5.83374 5.89511 5.91866 6.08475 6.17295 6.22983 6.26054
6.49254 6.54425 6.61069 6.72888 6.79609 7.25491 7.27680 7.45558
7.66305 7.77300 7.88549 8.06369 8.49142 9.24505 9.94919 10.23289
11.19033
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013275 B = 0.003379 C = 0.003021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2108.661072 B = 8284.211869 C = 9267.510400
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.167 3.833
3 C -0.188 4.188
4 C 0.009 3.991
5 C -0.122 4.122
6 C -0.194 4.194
7 C 0.591 3.409
8 O -0.531 6.531
9 N -0.607 5.607
10 C 0.106 3.894
11 C -0.081 4.081
12 H 0.102 0.898
13 C -0.119 4.119
14 C 0.154 3.846
15 N -0.584 5.584
16 C -0.273 4.273
17 H 0.065 0.935
18 C 0.009 3.991
19 N -0.887 5.887
20 Si 0.898 3.102
21 H -0.282 1.282
22 H -0.291 1.291
23 H -0.284 1.284
24 C 0.177 3.823
25 C -0.098 4.098
26 H 0.074 0.926
27 C 0.112 3.888
28 C 0.359 3.641
29 O -0.474 6.474
30 N -0.504 5.504
31 H 0.082 0.918
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.144 0.856
35 H 0.085 0.915
36 H 0.073 0.927
37 H 0.080 0.920
38 H 0.067 0.933
39 H 0.080 0.920
40 H 0.058 0.942
41 H 0.045 0.955
42 H 0.083 0.917
43 H 0.016 0.984
44 H 0.254 0.746
45 H 0.011 0.989
46 H 0.024 0.976
47 H 0.068 0.932
48 H 0.065 0.935
49 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.883 13.342 10.619 20.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.029 3.971
3 C -0.208 4.208
4 C 0.001 3.999
5 C -0.178 4.178
6 C -0.201 4.201
7 C 0.378 3.622
8 O -0.407 6.407
9 N -0.341 5.341
10 C -0.016 4.016
11 C -0.100 4.100
12 H 0.120 0.880
13 C -0.157 4.157
14 C 0.029 3.971
15 N -0.308 5.308
16 C -0.402 4.402
17 H 0.082 0.918
18 C -0.191 4.191
19 N -0.530 5.530
20 Si 0.728 3.272
21 H -0.208 1.208
22 H -0.216 1.216
23 H -0.211 1.211
24 C 0.050 3.950
25 C -0.117 4.117
26 H 0.093 0.907
27 C -0.011 4.011
28 C 0.179 3.821
29 O -0.282 6.282
30 N -0.225 5.225
31 H 0.100 0.900
32 H 0.098 0.902
33 H 0.100 0.900
34 H 0.162 0.838
35 H 0.103 0.897
36 H 0.092 0.908
37 H 0.099 0.901
38 H 0.085 0.915
39 H 0.098 0.902
40 H 0.076 0.924
41 H 0.064 0.936
42 H 0.100 0.900
43 H 0.034 0.966
44 H 0.064 0.936
45 H 0.029 0.971
46 H 0.042 0.958
47 H 0.086 0.914
48 H 0.084 0.916
49 H 0.267 0.733
Dipole moment (debyes) X Y Z Total
from point charges -10.875 12.491 11.879 20.381
hybrid contribution 0.121 -0.200 -1.122 1.146
sum -10.754 12.291 10.756 19.555
Atomic orbital electron populations
1.20798 0.88131 1.03976 1.03470 1.21187 0.97005 0.87063 0.91818
1.21746 0.93521 0.99601 1.05905 1.20220 0.93700 0.94053 0.91919
1.20920 1.00108 0.93145 1.03668 1.20770 0.94740 0.94194 1.10396
1.17352 0.85825 0.76299 0.82746 1.90804 1.69290 1.50091 1.30552
1.48691 1.08030 1.71967 1.05414 1.22769 0.79533 1.00539 0.98763
1.22280 0.99162 0.96059 0.92484 0.87965 1.21561 1.00272 0.93944
0.99883 1.20274 1.01120 0.91052 0.84619 1.42468 1.70150 1.06316
1.11890 1.19058 1.09454 1.13752 0.97985 0.91769 1.24936 0.94411
1.01106 0.98654 1.69980 1.05222 1.31495 1.46314 0.86438 0.78289
0.81633 0.80886 1.20816 1.21642 1.21084 1.19202 0.96743 0.86471
0.92547 1.21504 0.94383 1.00395 0.95421 0.90714 1.22170 0.96711
1.01262 0.80940 1.18988 0.86317 0.84541 0.92236 1.84723 1.76565
1.32554 1.34347 1.67074 1.09081 1.30395 1.15901 0.89956 0.90191
0.90007 0.83829 0.89676 0.90826 0.90087 0.91476 0.90176 0.92350
0.93619 0.89993 0.96591 0.93570 0.97137 0.95830 0.91414 0.91637
0.73310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.75 10.16 36.01 0.37 -0.38 16
2 C 0.17 1.79 6.78 -82.52 -0.56 1.23 16
3 C -0.19 -1.76 9.41 -39.50 -0.37 -2.13 16
4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16
5 C -0.12 -1.07 9.69 36.01 0.35 -0.72 16
6 C -0.19 -2.73 4.85 -104.69 -0.51 -3.24 16
7 C 0.59 9.27 5.46 -12.47 -0.07 9.20 16
8 O -0.53 -10.15 17.36 5.29 0.09 -10.06 16
9 N -0.61 -8.59 2.85 -170.63 -0.49 -9.08 16
10 C 0.11 1.46 6.28 -1.63 -0.01 1.45 16
11 C -0.08 -1.24 3.72 -88.34 -0.33 -1.57 16
12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16
13 C -0.12 -2.10 5.03 -27.49 -0.14 -2.24 16
14 C 0.15 3.49 5.14 -5.91 -0.03 3.46 16
15 N -0.58 -13.71 3.20 -180.06 -0.58 -14.29 16
16 C -0.27 -7.21 9.24 -15.06 -0.14 -7.35 16
17 H 0.06 1.68 7.94 -52.49 -0.42 1.26 16
18 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16
19 N -0.89 -24.77 10.93 55.49 0.61 -24.16 16
20 Si 0.90 21.19 29.62 -169.99 -5.04 16.15 16
21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
24 C 0.18 3.40 5.65 -7.21 -0.04 3.36 16
25 C -0.10 -1.46 2.68 -91.23 -0.24 -1.71 16
26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
27 C 0.11 1.50 5.18 -3.13 -0.02 1.49 16
28 C 0.36 5.30 7.77 -16.61 -0.13 5.17 16
29 O -0.47 -7.10 13.01 -17.98 -0.23 -7.33 16
30 N -0.50 -7.01 10.28 -9.21 -0.09 -7.10 16
31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16
33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16
35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
36 H 0.07 0.73 7.19 -51.93 -0.37 0.35 16
37 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16
38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16
40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
41 H 0.05 0.79 6.86 -51.93 -0.36 0.44 16
42 H 0.08 2.13 5.74 -51.93 -0.30 1.83 16
43 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16
44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16
45 H 0.01 0.21 7.78 -51.93 -0.40 -0.20 16
46 H 0.02 0.49 8.11 -51.93 -0.42 0.06 16
47 H 0.07 0.98 7.84 -51.93 -0.41 0.58 16
48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
49 H 0.41 4.77 9.06 45.56 0.41 5.18 16
LS Contribution 390.78 15.07 5.89 5.89
Total: -1.00 -33.14 390.78 -9.29 -42.44
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: -6.88 Total: 1.89 kcal
Atomic # 6 Polarization: 8.22 SS G_CDS: -2.57 Total: 5.65 kcal
Atomic # 7 Polarization: -54.08 SS G_CDS: -0.55 Total: -54.63 kcal
Atomic # 8 Polarization: -17.25 SS G_CDS: -0.14 Total: -17.39 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.04 Total: 16.15 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -33.14 -9.29 -42.44 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088059832.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal
(2) G-P(sol) polarization free energy of solvation -33.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.875 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds