Wall clock time and date at job start Wed Apr 1 2020 04:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.40954 * 2 1 4 4 C 1.38335 * 119.45882 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82098 * 180.02562 * 4 3 2 6 6 C 1.39990 * 118.34809 * 0.02562 * 4 3 2 7 7 C 1.47527 * 120.59291 * 180.02562 * 6 4 3 8 8 O 1.21581 * 120.00308 * 89.99526 * 7 6 4 9 9 N 1.34776 * 119.99734 * 269.99509 * 7 6 4 10 10 C 1.47756 * 125.81914 * 179.71959 * 9 7 6 11 11 C 1.56215 * 103.99751 * 154.03864 * 10 9 7 12 12 H 1.08998 * 113.17661 * 160.94220 * 11 10 9 13 13 C 1.52906 * 107.45508 * 286.25084 * 11 10 9 14 14 C 1.51599 * 111.54860 * 168.71906 * 13 11 10 15 15 N 1.44325 * 113.11930 * 320.92139 * 14 13 11 16 16 C 1.36932 * 116.35562 * 187.24199 * 15 14 13 17 17 H 1.08000 * 120.00052 * 152.51495 * 16 15 14 18 18 C 1.38814 * 120.00060 * 332.50943 * 16 15 14 19 19 N 1.31616 * 120.00250 * 335.10743 * 18 16 15 20 20 Si 1.86802 * 119.99849 * 155.10813 * 18 16 15 21 21 H 1.48502 * 109.47065 * 60.00136 * 20 18 16 22 22 H 1.48498 * 109.47238 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47023 * 300.00119 * 20 18 16 24 24 C 1.43375 * 127.11769 * 6.27486 * 15 14 13 25 25 C 1.49948 * 116.48241 * 4.32233 * 24 15 14 26 26 H 1.09002 * 108.42825 * 139.73760 * 25 24 15 27 27 C 1.47620 * 125.81856 * 0.02562 * 9 7 6 28 28 C 1.40269 * 118.80647 * 359.97394 * 6 4 3 29 29 O 1.35429 * 119.79874 * 180.02562 * 28 6 4 30 30 N 1.31885 * 119.40570 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46889 * 270.02717 * 1 2 3 32 32 H 1.08997 * 109.47060 * 30.02643 * 1 2 3 33 33 H 1.08997 * 109.46961 * 150.02262 * 1 2 3 34 34 H 1.08005 * 120.26877 * 359.97305 * 3 2 1 35 35 H 1.09003 * 109.46567 * 90.00660 * 5 4 3 36 36 H 1.09005 * 109.47184 * 209.99951 * 5 4 3 37 37 H 1.08994 * 109.47865 * 330.00455 * 5 4 3 38 38 H 1.08998 * 110.50065 * 272.78227 * 10 9 7 39 39 H 1.08997 * 110.50180 * 35.46207 * 10 9 7 40 40 H 1.08998 * 109.05965 * 289.25341 * 13 11 10 41 41 H 1.09001 * 109.06129 * 48.25694 * 13 11 10 42 42 H 1.09004 * 108.75294 * 81.86479 * 14 13 11 43 43 H 1.09004 * 108.75467 * 200.09984 * 14 13 11 44 44 H 0.97003 * 120.00290 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.15648 * 241.52742 * 24 15 14 46 46 H 1.08996 * 106.73386 * 125.21423 * 24 15 14 47 47 H 1.08990 * 110.08615 * 299.83825 * 27 9 7 48 48 H 1.09004 * 110.07913 * 61.40206 * 27 9 7 49 49 H 0.96695 * 114.00204 * 270.00110 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2355 -0.0250 0.0005 7 6 5.7097 -0.0815 0.0016 8 8 6.3164 -0.1052 1.0550 9 7 6.3840 -0.1069 -1.1651 10 6 7.8532 -0.1573 -1.3138 11 6 8.0690 -0.8315 -2.7064 12 1 9.0618 -0.6538 -3.1197 13 6 7.7470 -2.3181 -2.5511 14 6 7.6584 -3.0121 -3.8960 15 7 7.0169 -2.2072 -4.9078 16 6 6.7631 -2.8233 -6.1041 17 1 5.9411 -2.4894 -6.7198 18 6 7.5625 -3.8770 -6.5255 19 7 8.7983 -3.9827 -6.0850 20 14 6.8844 -5.1450 -7.7179 21 1 6.4823 -4.4728 -8.9795 22 1 7.9289 -6.1598 -8.0083 23 1 5.7026 -5.8107 -7.1133 24 6 6.5999 -0.8405 -4.7903 25 6 6.9473 -0.1432 -3.5091 26 1 7.2593 0.8744 -3.7443 27 6 5.7807 -0.0827 -2.5122 28 6 3.4758 -1.2041 0.0005 29 8 4.0991 -2.4064 0.0010 30 7 2.1545 -1.1489 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6412 2.1376 -0.0004 35 1 4.5263 2.8131 1.0290 36 1 5.2916 2.3583 -0.5124 37 1 3.7623 3.2690 -0.5126 38 1 8.2725 0.8488 -1.3051 39 1 8.2963 -0.7634 -0.5237 40 1 8.5287 -2.7915 -1.9570 41 1 6.7935 -2.4237 -2.0335 42 1 8.6662 -3.2580 -4.2305 43 1 7.0941 -3.9371 -3.7765 44 1 9.3568 -4.7192 -6.3792 45 1 5.5199 -0.7832 -4.9263 46 1 7.0692 -0.2976 -5.6107 47 1 5.1290 -0.9460 -2.6460 48 1 5.2157 0.8388 -2.6527 49 1 4.2805 -2.7558 -0.8822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088059832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:38 Heat of formation + Delta-G solvation = -10.167748 kcal Electronic energy + Delta-G solvation = -31808.566301 eV Core-core repulsion = 27736.590093 eV Total energy + Delta-G solvation = -4071.976208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.22770 -40.02023 -38.25465 -37.49247 -35.69562 -34.47556 -32.61677 -31.98896 -31.58058 -30.41684 -28.84673 -28.00889 -27.56285 -25.61007 -24.03793 -23.22321 -22.22571 -21.81832 -21.38305 -19.69682 -18.58652 -17.95255 -17.57947 -17.36196 -17.05828 -16.06667 -15.75000 -15.45676 -14.94648 -14.62927 -14.44213 -14.18497 -13.93123 -13.86114 -13.63488 -13.34102 -13.27661 -13.19302 -13.02484 -12.71576 -12.68933 -12.53245 -12.35046 -12.24822 -12.07216 -11.82513 -11.79861 -11.32268 -11.17181 -10.78171 -10.63609 -10.35313 -10.32974 -10.26427 -9.83741 -9.77858 -9.70600 -9.62620 -9.54605 -9.00582 -8.65872 -8.49919 -6.65608 -5.67718 -3.32071 0.57296 0.85978 2.47724 2.87162 3.18260 3.36108 3.42912 3.43554 3.45028 4.15785 4.24032 4.36602 4.46762 4.67583 4.72844 4.80881 4.90354 5.02583 5.04600 5.10705 5.22183 5.26507 5.27752 5.31925 5.32925 5.46123 5.52164 5.52975 5.61827 5.69064 5.73390 5.77396 5.83374 5.89511 5.91866 6.08475 6.17295 6.22983 6.26054 6.49254 6.54425 6.61069 6.72888 6.79609 7.25491 7.27680 7.45558 7.66305 7.77300 7.88549 8.06369 8.49142 9.24505 9.94919 10.23289 11.19033 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.003379 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.661072 B = 8284.211869 C = 9267.510400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.188 4.188 4 C 0.009 3.991 5 C -0.122 4.122 6 C -0.194 4.194 7 C 0.591 3.409 8 O -0.531 6.531 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.081 4.081 12 H 0.102 0.898 13 C -0.119 4.119 14 C 0.154 3.846 15 N -0.584 5.584 16 C -0.273 4.273 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.887 5.887 20 Si 0.898 3.102 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.177 3.823 25 C -0.098 4.098 26 H 0.074 0.926 27 C 0.112 3.888 28 C 0.359 3.641 29 O -0.474 6.474 30 N -0.504 5.504 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.016 0.984 44 H 0.254 0.746 45 H 0.011 0.989 46 H 0.024 0.976 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 13.342 10.619 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.208 4.208 4 C 0.001 3.999 5 C -0.178 4.178 6 C -0.201 4.201 7 C 0.378 3.622 8 O -0.407 6.407 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.100 4.100 12 H 0.120 0.880 13 C -0.157 4.157 14 C 0.029 3.971 15 N -0.308 5.308 16 C -0.402 4.402 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.530 5.530 20 Si 0.728 3.272 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.050 3.950 25 C -0.117 4.117 26 H 0.093 0.907 27 C -0.011 4.011 28 C 0.179 3.821 29 O -0.282 6.282 30 N -0.225 5.225 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.875 12.491 11.879 20.381 hybrid contribution 0.121 -0.200 -1.122 1.146 sum -10.754 12.291 10.756 19.555 Atomic orbital electron populations 1.20798 0.88131 1.03976 1.03470 1.21187 0.97005 0.87063 0.91818 1.21746 0.93521 0.99601 1.05905 1.20220 0.93700 0.94053 0.91919 1.20920 1.00108 0.93145 1.03668 1.20770 0.94740 0.94194 1.10396 1.17352 0.85825 0.76299 0.82746 1.90804 1.69290 1.50091 1.30552 1.48691 1.08030 1.71967 1.05414 1.22769 0.79533 1.00539 0.98763 1.22280 0.99162 0.96059 0.92484 0.87965 1.21561 1.00272 0.93944 0.99883 1.20274 1.01120 0.91052 0.84619 1.42468 1.70150 1.06316 1.11890 1.19058 1.09454 1.13752 0.97985 0.91769 1.24936 0.94411 1.01106 0.98654 1.69980 1.05222 1.31495 1.46314 0.86438 0.78289 0.81633 0.80886 1.20816 1.21642 1.21084 1.19202 0.96743 0.86471 0.92547 1.21504 0.94383 1.00395 0.95421 0.90714 1.22170 0.96711 1.01262 0.80940 1.18988 0.86317 0.84541 0.92236 1.84723 1.76565 1.32554 1.34347 1.67074 1.09081 1.30395 1.15901 0.89956 0.90191 0.90007 0.83829 0.89676 0.90826 0.90087 0.91476 0.90176 0.92350 0.93619 0.89993 0.96591 0.93570 0.97137 0.95830 0.91414 0.91637 0.73310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.16 36.01 0.37 -0.38 16 2 C 0.17 1.79 6.78 -82.52 -0.56 1.23 16 3 C -0.19 -1.76 9.41 -39.50 -0.37 -2.13 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.12 -1.07 9.69 36.01 0.35 -0.72 16 6 C -0.19 -2.73 4.85 -104.69 -0.51 -3.24 16 7 C 0.59 9.27 5.46 -12.47 -0.07 9.20 16 8 O -0.53 -10.15 17.36 5.29 0.09 -10.06 16 9 N -0.61 -8.59 2.85 -170.63 -0.49 -9.08 16 10 C 0.11 1.46 6.28 -1.63 -0.01 1.45 16 11 C -0.08 -1.24 3.72 -88.34 -0.33 -1.57 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 C -0.12 -2.10 5.03 -27.49 -0.14 -2.24 16 14 C 0.15 3.49 5.14 -5.91 -0.03 3.46 16 15 N -0.58 -13.71 3.20 -180.06 -0.58 -14.29 16 16 C -0.27 -7.21 9.24 -15.06 -0.14 -7.35 16 17 H 0.06 1.68 7.94 -52.49 -0.42 1.26 16 18 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 19 N -0.89 -24.77 10.93 55.49 0.61 -24.16 16 20 Si 0.90 21.19 29.62 -169.99 -5.04 16.15 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.18 3.40 5.65 -7.21 -0.04 3.36 16 25 C -0.10 -1.46 2.68 -91.23 -0.24 -1.71 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 C 0.11 1.50 5.18 -3.13 -0.02 1.49 16 28 C 0.36 5.30 7.77 -16.61 -0.13 5.17 16 29 O -0.47 -7.10 13.01 -17.98 -0.23 -7.33 16 30 N -0.50 -7.01 10.28 -9.21 -0.09 -7.10 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.73 7.19 -51.93 -0.37 0.35 16 37 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.79 6.86 -51.93 -0.36 0.44 16 42 H 0.08 2.13 5.74 -51.93 -0.30 1.83 16 43 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.01 0.21 7.78 -51.93 -0.40 -0.20 16 46 H 0.02 0.49 8.11 -51.93 -0.42 0.06 16 47 H 0.07 0.98 7.84 -51.93 -0.41 0.58 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.41 4.77 9.06 45.56 0.41 5.18 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -33.14 390.78 -9.29 -42.44 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.88 Total: 1.89 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.57 Total: 5.65 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.55 Total: -54.63 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.14 Total: -17.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.04 Total: 16.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.14 -9.29 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088059832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds