Wall clock time and date at job start Wed Apr 1 2020 04:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.40954 * 2 1 4 4 C 1.38335 * 119.45882 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82098 * 180.02562 * 4 3 2 6 6 C 1.39990 * 118.34809 * 0.02562 * 4 3 2 7 7 C 1.47527 * 120.59291 * 180.02562 * 6 4 3 8 8 O 1.21581 * 120.00308 * 89.99526 * 7 6 4 9 9 N 1.34776 * 119.99734 * 269.99509 * 7 6 4 10 10 C 1.47756 * 125.81914 * 179.71959 * 9 7 6 11 11 C 1.56215 * 103.99751 * 154.03864 * 10 9 7 12 12 H 1.08998 * 113.17661 * 160.94220 * 11 10 9 13 13 C 1.52906 * 107.45508 * 286.25084 * 11 10 9 14 14 C 1.51599 * 111.54860 * 168.71906 * 13 11 10 15 15 N 1.44325 * 113.11930 * 320.92139 * 14 13 11 16 16 C 1.36932 * 116.35562 * 187.24199 * 15 14 13 17 17 H 1.08000 * 120.00052 * 152.51495 * 16 15 14 18 18 C 1.38814 * 120.00060 * 332.50943 * 16 15 14 19 19 N 1.31616 * 120.00250 * 335.10743 * 18 16 15 20 20 Si 1.86802 * 119.99849 * 155.10813 * 18 16 15 21 21 H 1.48502 * 109.47065 * 60.00136 * 20 18 16 22 22 H 1.48498 * 109.47238 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47023 * 300.00119 * 20 18 16 24 24 C 1.43375 * 127.11769 * 6.27486 * 15 14 13 25 25 C 1.49948 * 116.48241 * 4.32233 * 24 15 14 26 26 H 1.09002 * 108.42825 * 139.73760 * 25 24 15 27 27 C 1.47620 * 125.81856 * 0.02562 * 9 7 6 28 28 C 1.40269 * 118.80647 * 359.97394 * 6 4 3 29 29 O 1.35429 * 119.79874 * 180.02562 * 28 6 4 30 30 N 1.31885 * 119.40570 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46889 * 270.02717 * 1 2 3 32 32 H 1.08997 * 109.47060 * 30.02643 * 1 2 3 33 33 H 1.08997 * 109.46961 * 150.02262 * 1 2 3 34 34 H 1.08005 * 120.26877 * 359.97305 * 3 2 1 35 35 H 1.09003 * 109.46567 * 90.00660 * 5 4 3 36 36 H 1.09005 * 109.47184 * 209.99951 * 5 4 3 37 37 H 1.08994 * 109.47865 * 330.00455 * 5 4 3 38 38 H 1.08998 * 110.50065 * 272.78227 * 10 9 7 39 39 H 1.08997 * 110.50180 * 35.46207 * 10 9 7 40 40 H 1.08998 * 109.05965 * 289.25341 * 13 11 10 41 41 H 1.09001 * 109.06129 * 48.25694 * 13 11 10 42 42 H 1.09004 * 108.75294 * 81.86479 * 14 13 11 43 43 H 1.09004 * 108.75467 * 200.09984 * 14 13 11 44 44 H 0.97003 * 120.00290 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.15648 * 241.52742 * 24 15 14 46 46 H 1.08996 * 106.73386 * 125.21423 * 24 15 14 47 47 H 1.08990 * 110.08615 * 299.83825 * 27 9 7 48 48 H 1.09004 * 110.07913 * 61.40206 * 27 9 7 49 49 H 0.96695 * 114.00204 * 270.00110 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2355 -0.0250 0.0005 7 6 5.7097 -0.0815 0.0016 8 8 6.3164 -0.1052 1.0550 9 7 6.3840 -0.1069 -1.1651 10 6 7.8532 -0.1573 -1.3138 11 6 8.0690 -0.8315 -2.7064 12 1 9.0618 -0.6538 -3.1197 13 6 7.7470 -2.3181 -2.5511 14 6 7.6584 -3.0121 -3.8960 15 7 7.0169 -2.2072 -4.9078 16 6 6.7631 -2.8233 -6.1041 17 1 5.9411 -2.4894 -6.7198 18 6 7.5625 -3.8770 -6.5255 19 7 8.7983 -3.9827 -6.0850 20 14 6.8844 -5.1450 -7.7179 21 1 6.4823 -4.4728 -8.9795 22 1 7.9289 -6.1598 -8.0083 23 1 5.7026 -5.8107 -7.1133 24 6 6.5999 -0.8405 -4.7903 25 6 6.9473 -0.1432 -3.5091 26 1 7.2593 0.8744 -3.7443 27 6 5.7807 -0.0827 -2.5122 28 6 3.4758 -1.2041 0.0005 29 8 4.0991 -2.4064 0.0010 30 7 2.1545 -1.1489 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6412 2.1376 -0.0004 35 1 4.5263 2.8131 1.0290 36 1 5.2916 2.3583 -0.5124 37 1 3.7623 3.2690 -0.5126 38 1 8.2725 0.8488 -1.3051 39 1 8.2963 -0.7634 -0.5237 40 1 8.5287 -2.7915 -1.9570 41 1 6.7935 -2.4237 -2.0335 42 1 8.6662 -3.2580 -4.2305 43 1 7.0941 -3.9371 -3.7765 44 1 9.3568 -4.7192 -6.3792 45 1 5.5199 -0.7832 -4.9263 46 1 7.0692 -0.2976 -5.6107 47 1 5.1290 -0.9460 -2.6460 48 1 5.2157 0.8388 -2.6527 49 1 4.2805 -2.7558 -0.8822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088059832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:37 Heat of formation + Delta-G solvation = -34.115075 kcal Electronic energy + Delta-G solvation = -31809.604735 eV Core-core repulsion = 27736.590093 eV Total energy + Delta-G solvation = -4073.014642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.24612 -41.18280 -39.57743 -38.49870 -37.32656 -35.33914 -34.20267 -33.16147 -32.79893 -32.04608 -29.91971 -29.03301 -28.40075 -27.16771 -25.50886 -24.38621 -23.56940 -23.19834 -22.41628 -20.77228 -19.60150 -19.46010 -18.92091 -18.62232 -18.25620 -17.24831 -16.95445 -16.84959 -16.57007 -15.82918 -15.63058 -15.41208 -15.30379 -15.11272 -14.76909 -14.55281 -14.26976 -14.20091 -14.00728 -13.96785 -13.81811 -13.68286 -13.36230 -13.24562 -13.01618 -12.99677 -12.89323 -12.85253 -12.65748 -12.54436 -12.24077 -12.07680 -11.87278 -11.57454 -11.45848 -11.25239 -11.19293 -10.63820 -10.55568 -10.52132 -9.88104 -9.80081 -8.65054 -7.69684 -5.38847 -0.31822 0.01301 1.30763 1.45484 1.49500 1.55163 1.77978 2.29030 2.51063 2.54122 3.14926 3.21704 3.44207 3.46533 3.53932 3.66681 3.74615 3.82335 3.96178 4.11706 4.15108 4.23978 4.26675 4.44939 4.48106 4.49112 4.56281 4.60754 4.63264 4.64924 4.75805 4.80378 4.85828 4.94242 4.94832 4.99629 5.03341 5.05209 5.09961 5.17331 5.18346 5.25917 5.32535 5.41018 5.50524 5.69200 5.94340 6.26260 6.33549 6.44765 6.78147 6.89406 7.22351 8.06470 8.24345 9.12091 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.003379 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.661072 B = 8284.211869 C = 9267.510400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.158 3.842 3 C -0.172 4.172 4 C 0.006 3.994 5 C -0.120 4.120 6 C -0.216 4.216 7 C 0.596 3.404 8 O -0.573 6.573 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.078 4.078 12 H 0.103 0.897 13 C -0.108 4.108 14 C 0.165 3.835 15 N -0.595 5.595 16 C -0.286 4.286 17 H 0.064 0.936 18 C -0.039 4.039 19 N -0.914 5.914 20 Si 0.955 3.045 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.285 1.285 24 C 0.175 3.825 25 C -0.092 4.092 26 H 0.106 0.894 27 C 0.121 3.879 28 C 0.334 3.666 29 O -0.494 6.494 30 N -0.533 5.533 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.188 0.812 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.050 0.950 43 H -0.016 1.016 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 16.480 10.787 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.020 3.980 3 C -0.192 4.192 4 C -0.001 4.001 5 C -0.176 4.176 6 C -0.222 4.222 7 C 0.384 3.616 8 O -0.453 6.453 9 N -0.334 5.334 10 C -0.009 4.009 11 C -0.097 4.097 12 H 0.122 0.878 13 C -0.146 4.146 14 C 0.040 3.960 15 N -0.319 5.319 16 C -0.416 4.416 17 H 0.081 0.919 18 C -0.237 4.237 19 N -0.559 5.559 20 Si 0.784 3.216 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.211 1.211 24 C 0.049 3.951 25 C -0.111 4.111 26 H 0.125 0.875 27 C -0.001 4.001 28 C 0.155 3.845 29 O -0.303 6.303 30 N -0.254 5.254 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.206 0.794 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.002 0.998 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -12.937 15.653 12.019 23.597 hybrid contribution 0.659 -1.149 -1.195 1.784 sum -12.278 14.504 10.823 21.869 Atomic orbital electron populations 1.20934 0.85508 1.05135 1.04557 1.21943 0.98747 0.86811 0.90468 1.22200 0.92841 1.00772 1.03353 1.20618 0.94723 0.93843 0.90966 1.20999 0.99794 0.92646 1.04166 1.20750 0.93602 0.95288 1.12589 1.17577 0.86521 0.75251 0.82243 1.90773 1.70344 1.52252 1.31958 1.48673 1.08164 1.71185 1.05427 1.22731 0.79527 1.01618 0.96975 1.22212 0.99474 0.94124 0.93890 0.87839 1.21400 1.00673 0.95716 0.96834 1.19977 0.98485 0.90721 0.86844 1.42684 1.69906 1.08133 1.11142 1.19378 1.09172 1.14254 0.98784 0.91871 1.25622 0.94670 1.02730 1.00668 1.70134 1.06162 1.31795 1.47776 0.85525 0.77331 0.79374 0.79405 1.19799 1.21975 1.21108 1.19312 0.96779 0.84348 0.94665 1.21419 0.94772 1.01194 0.93726 0.87544 1.22101 0.95893 1.02162 0.79925 1.19170 0.86966 0.84443 0.93904 1.84685 1.76965 1.33457 1.35228 1.67098 1.08761 1.32384 1.17116 0.88733 0.86992 0.90895 0.79439 0.89401 0.91966 0.86693 0.88717 0.91204 0.91863 0.93398 0.93274 0.99794 0.94075 0.96391 0.96863 0.92786 0.88765 0.72675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.16 71.24 0.72 -0.42 16 2 C 0.16 3.00 6.78 42.58 0.29 3.29 16 3 C -0.17 -2.56 9.41 22.32 0.21 -2.35 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -1.66 9.69 71.24 0.69 -0.97 16 6 C -0.22 -5.86 4.85 -19.91 -0.10 -5.96 16 7 C 0.60 18.31 5.46 86.69 0.47 18.78 16 8 O -0.57 -22.01 17.36 -3.97 -0.07 -22.08 16 9 N -0.60 -16.16 2.85 -812.03 -2.31 -18.48 16 10 C 0.11 2.94 6.28 87.26 0.55 3.48 16 11 C -0.08 -2.30 3.72 -9.31 -0.03 -2.34 16 12 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 13 C -0.11 -3.90 5.03 30.10 0.15 -3.75 16 14 C 0.17 7.77 5.14 86.32 0.44 8.21 16 15 N -0.59 -28.40 3.20 -723.59 -2.32 -30.72 16 16 C -0.29 -15.35 9.24 84.03 0.78 -14.58 16 17 H 0.06 3.34 7.94 -2.91 -0.02 3.32 16 18 C -0.04 -2.16 4.94 84.86 0.42 -1.74 16 19 N -0.91 -52.70 10.93 21.65 0.24 -52.46 16 20 Si 0.96 44.32 29.62 68.60 2.03 46.35 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 C 0.17 6.56 5.65 85.98 0.49 7.05 16 25 C -0.09 -2.57 2.68 -11.19 -0.03 -2.60 16 26 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 27 C 0.12 3.01 5.18 86.36 0.45 3.46 16 28 C 0.33 9.94 7.77 85.13 0.66 10.60 16 29 O -0.49 -15.56 13.01 -87.25 -1.14 -16.69 16 30 N -0.53 -14.54 10.28 -296.06 -3.04 -17.58 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.51 8.07 -2.39 -0.02 0.49 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.03 7.19 -2.38 -0.02 1.01 16 37 H 0.11 0.80 8.10 -2.39 -0.02 0.78 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 1.70 6.86 -2.39 -0.02 1.68 16 42 H 0.05 2.69 5.74 -2.38 -0.01 2.68 16 43 H -0.02 -0.84 8.12 -2.38 -0.02 -0.86 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.02 0.67 7.78 -2.38 -0.02 0.65 16 46 H 0.01 0.53 8.11 -2.39 -0.02 0.51 16 47 H 0.05 1.52 7.84 -2.39 -0.02 1.50 16 48 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 49 H 0.41 10.52 9.06 -74.06 -0.67 9.85 16 Total: -1.00 -75.69 390.78 -0.27 -75.96 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.30 Total: 15.51 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.04 Total: 20.18 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.44 Total: -119.24 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.20 Total: -38.77 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.69 -0.27 -75.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088059832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.848 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds