Wall clock time and date at job start Wed Apr 1 2020 04:02:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38359 * 119.40954 * 2 1
4 4 C 1.38335 * 119.45882 * 179.97438 * 3 2 1
5 5 C 1.50699 * 120.82098 * 180.02562 * 4 3 2
6 6 C 1.39990 * 118.34809 * 0.02562 * 4 3 2
7 7 C 1.47527 * 120.59291 * 180.02562 * 6 4 3
8 8 O 1.21581 * 120.00308 * 89.99526 * 7 6 4
9 9 N 1.34776 * 119.99734 * 269.99509 * 7 6 4
10 10 C 1.47756 * 125.81914 * 179.71959 * 9 7 6
11 11 C 1.56215 * 103.99751 * 154.03864 * 10 9 7
12 12 H 1.08998 * 113.17661 * 160.94220 * 11 10 9
13 13 C 1.52906 * 107.45508 * 286.25084 * 11 10 9
14 14 C 1.51599 * 111.54860 * 168.71906 * 13 11 10
15 15 N 1.44325 * 113.11930 * 320.92139 * 14 13 11
16 16 C 1.36932 * 116.35562 * 187.24199 * 15 14 13
17 17 H 1.08000 * 120.00052 * 152.51495 * 16 15 14
18 18 C 1.38814 * 120.00060 * 332.50943 * 16 15 14
19 19 N 1.31616 * 120.00250 * 335.10743 * 18 16 15
20 20 Si 1.86802 * 119.99849 * 155.10813 * 18 16 15
21 21 H 1.48502 * 109.47065 * 60.00136 * 20 18 16
22 22 H 1.48498 * 109.47238 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47023 * 300.00119 * 20 18 16
24 24 C 1.43375 * 127.11769 * 6.27486 * 15 14 13
25 25 C 1.49948 * 116.48241 * 4.32233 * 24 15 14
26 26 H 1.09002 * 108.42825 * 139.73760 * 25 24 15
27 27 C 1.47620 * 125.81856 * 0.02562 * 9 7 6
28 28 C 1.40269 * 118.80647 * 359.97394 * 6 4 3
29 29 O 1.35429 * 119.79874 * 180.02562 * 28 6 4
30 30 N 1.31885 * 119.40570 * 179.97438 * 2 1 3
31 31 H 1.09001 * 109.46889 * 270.02717 * 1 2 3
32 32 H 1.08997 * 109.47060 * 30.02643 * 1 2 3
33 33 H 1.08997 * 109.46961 * 150.02262 * 1 2 3
34 34 H 1.08005 * 120.26877 * 359.97305 * 3 2 1
35 35 H 1.09003 * 109.46567 * 90.00660 * 5 4 3
36 36 H 1.09005 * 109.47184 * 209.99951 * 5 4 3
37 37 H 1.08994 * 109.47865 * 330.00455 * 5 4 3
38 38 H 1.08998 * 110.50065 * 272.78227 * 10 9 7
39 39 H 1.08997 * 110.50180 * 35.46207 * 10 9 7
40 40 H 1.08998 * 109.05965 * 289.25341 * 13 11 10
41 41 H 1.09001 * 109.06129 * 48.25694 * 13 11 10
42 42 H 1.09004 * 108.75294 * 81.86479 * 14 13 11
43 43 H 1.09004 * 108.75467 * 200.09984 * 14 13 11
44 44 H 0.97003 * 120.00290 * 179.97438 * 19 18 16
45 45 H 1.09005 * 109.15648 * 241.52742 * 24 15 14
46 46 H 1.08996 * 106.73386 * 125.21423 * 24 15 14
47 47 H 1.08990 * 110.08615 * 299.83825 * 27 9 7
48 48 H 1.09004 * 110.07913 * 61.40206 * 27 9 7
49 49 H 0.96695 * 114.00204 * 270.00110 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2053 0.0000
4 6 3.5698 1.2065 0.0005
5 6 4.3408 2.5013 0.0011
6 6 4.2355 -0.0250 0.0005
7 6 5.7097 -0.0815 0.0016
8 8 6.3164 -0.1052 1.0550
9 7 6.3840 -0.1069 -1.1651
10 6 7.8532 -0.1573 -1.3138
11 6 8.0690 -0.8315 -2.7064
12 1 9.0618 -0.6538 -3.1197
13 6 7.7470 -2.3181 -2.5511
14 6 7.6584 -3.0121 -3.8960
15 7 7.0169 -2.2072 -4.9078
16 6 6.7631 -2.8233 -6.1041
17 1 5.9411 -2.4894 -6.7198
18 6 7.5625 -3.8770 -6.5255
19 7 8.7983 -3.9827 -6.0850
20 14 6.8844 -5.1450 -7.7179
21 1 6.4823 -4.4728 -8.9795
22 1 7.9289 -6.1598 -8.0083
23 1 5.7026 -5.8107 -7.1133
24 6 6.5999 -0.8405 -4.7903
25 6 6.9473 -0.1432 -3.5091
26 1 7.2593 0.8744 -3.7443
27 6 5.7807 -0.0827 -2.5122
28 6 3.4758 -1.2041 0.0005
29 8 4.0991 -2.4064 0.0010
30 7 2.1545 -1.1489 0.0005
31 1 -0.3633 0.0005 1.0277
32 1 -0.3633 0.8897 -0.5142
33 1 -0.3633 -0.8902 -0.5135
34 1 1.6412 2.1376 -0.0004
35 1 4.5263 2.8131 1.0290
36 1 5.2916 2.3583 -0.5124
37 1 3.7623 3.2690 -0.5126
38 1 8.2725 0.8488 -1.3051
39 1 8.2963 -0.7634 -0.5237
40 1 8.5287 -2.7915 -1.9570
41 1 6.7935 -2.4237 -2.0335
42 1 8.6662 -3.2580 -4.2305
43 1 7.0941 -3.9371 -3.7765
44 1 9.3568 -4.7192 -6.3792
45 1 5.5199 -0.7832 -4.9263
46 1 7.0692 -0.2976 -5.6107
47 1 5.1290 -0.9460 -2.6460
48 1 5.2157 0.8388 -2.6527
49 1 4.2805 -2.7558 -0.8822
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088059832.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:02:37
Heat of formation + Delta-G solvation = -34.115075 kcal
Electronic energy + Delta-G solvation = -31809.604735 eV
Core-core repulsion = 27736.590093 eV
Total energy + Delta-G solvation = -4073.014642 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-42.24612 -41.18280 -39.57743 -38.49870 -37.32656 -35.33914 -34.20267 -33.16147
-32.79893 -32.04608 -29.91971 -29.03301 -28.40075 -27.16771 -25.50886 -24.38621
-23.56940 -23.19834 -22.41628 -20.77228 -19.60150 -19.46010 -18.92091 -18.62232
-18.25620 -17.24831 -16.95445 -16.84959 -16.57007 -15.82918 -15.63058 -15.41208
-15.30379 -15.11272 -14.76909 -14.55281 -14.26976 -14.20091 -14.00728 -13.96785
-13.81811 -13.68286 -13.36230 -13.24562 -13.01618 -12.99677 -12.89323 -12.85253
-12.65748 -12.54436 -12.24077 -12.07680 -11.87278 -11.57454 -11.45848 -11.25239
-11.19293 -10.63820 -10.55568 -10.52132 -9.88104 -9.80081 -8.65054 -7.69684
-5.38847 -0.31822 0.01301 1.30763 1.45484 1.49500 1.55163 1.77978
2.29030 2.51063 2.54122 3.14926 3.21704 3.44207 3.46533 3.53932
3.66681 3.74615 3.82335 3.96178 4.11706 4.15108 4.23978 4.26675
4.44939 4.48106 4.49112 4.56281 4.60754 4.63264 4.64924 4.75805
4.80378 4.85828 4.94242 4.94832 4.99629 5.03341 5.05209 5.09961
5.17331 5.18346 5.25917 5.32535 5.41018 5.50524 5.69200 5.94340
6.26260 6.33549 6.44765 6.78147 6.89406 7.22351 8.06470 8.24345
9.12091
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013275 B = 0.003379 C = 0.003021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2108.661072 B = 8284.211869 C = 9267.510400
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C 0.158 3.842
3 C -0.172 4.172
4 C 0.006 3.994
5 C -0.120 4.120
6 C -0.216 4.216
7 C 0.596 3.404
8 O -0.573 6.573
9 N -0.602 5.602
10 C 0.113 3.887
11 C -0.078 4.078
12 H 0.103 0.897
13 C -0.108 4.108
14 C 0.165 3.835
15 N -0.595 5.595
16 C -0.286 4.286
17 H 0.064 0.936
18 C -0.039 4.039
19 N -0.914 5.914
20 Si 0.955 3.045
21 H -0.273 1.273
22 H -0.294 1.294
23 H -0.285 1.285
24 C 0.175 3.825
25 C -0.092 4.092
26 H 0.106 0.894
27 C 0.121 3.879
28 C 0.334 3.666
29 O -0.494 6.494
30 N -0.533 5.533
31 H 0.094 0.906
32 H 0.112 0.888
33 H 0.072 0.928
34 H 0.188 0.812
35 H 0.088 0.912
36 H 0.061 0.939
37 H 0.115 0.885
38 H 0.095 0.905
39 H 0.069 0.931
40 H 0.063 0.937
41 H 0.047 0.953
42 H 0.050 0.950
43 H -0.016 1.016
44 H 0.250 0.750
45 H 0.018 0.982
46 H 0.013 0.987
47 H 0.054 0.946
48 H 0.094 0.906
49 H 0.413 0.587
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.923 16.480 10.787 23.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.020 3.980
3 C -0.192 4.192
4 C -0.001 4.001
5 C -0.176 4.176
6 C -0.222 4.222
7 C 0.384 3.616
8 O -0.453 6.453
9 N -0.334 5.334
10 C -0.009 4.009
11 C -0.097 4.097
12 H 0.122 0.878
13 C -0.146 4.146
14 C 0.040 3.960
15 N -0.319 5.319
16 C -0.416 4.416
17 H 0.081 0.919
18 C -0.237 4.237
19 N -0.559 5.559
20 Si 0.784 3.216
21 H -0.198 1.198
22 H -0.220 1.220
23 H -0.211 1.211
24 C 0.049 3.951
25 C -0.111 4.111
26 H 0.125 0.875
27 C -0.001 4.001
28 C 0.155 3.845
29 O -0.303 6.303
30 N -0.254 5.254
31 H 0.113 0.887
32 H 0.130 0.870
33 H 0.091 0.909
34 H 0.206 0.794
35 H 0.106 0.894
36 H 0.080 0.920
37 H 0.133 0.867
38 H 0.113 0.887
39 H 0.088 0.912
40 H 0.081 0.919
41 H 0.066 0.934
42 H 0.067 0.933
43 H 0.002 0.998
44 H 0.059 0.941
45 H 0.036 0.964
46 H 0.031 0.969
47 H 0.072 0.928
48 H 0.112 0.888
49 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges -12.937 15.653 12.019 23.597
hybrid contribution 0.659 -1.149 -1.195 1.784
sum -12.278 14.504 10.823 21.869
Atomic orbital electron populations
1.20934 0.85508 1.05135 1.04557 1.21943 0.98747 0.86811 0.90468
1.22200 0.92841 1.00772 1.03353 1.20618 0.94723 0.93843 0.90966
1.20999 0.99794 0.92646 1.04166 1.20750 0.93602 0.95288 1.12589
1.17577 0.86521 0.75251 0.82243 1.90773 1.70344 1.52252 1.31958
1.48673 1.08164 1.71185 1.05427 1.22731 0.79527 1.01618 0.96975
1.22212 0.99474 0.94124 0.93890 0.87839 1.21400 1.00673 0.95716
0.96834 1.19977 0.98485 0.90721 0.86844 1.42684 1.69906 1.08133
1.11142 1.19378 1.09172 1.14254 0.98784 0.91871 1.25622 0.94670
1.02730 1.00668 1.70134 1.06162 1.31795 1.47776 0.85525 0.77331
0.79374 0.79405 1.19799 1.21975 1.21108 1.19312 0.96779 0.84348
0.94665 1.21419 0.94772 1.01194 0.93726 0.87544 1.22101 0.95893
1.02162 0.79925 1.19170 0.86966 0.84443 0.93904 1.84685 1.76965
1.33457 1.35228 1.67098 1.08761 1.32384 1.17116 0.88733 0.86992
0.90895 0.79439 0.89401 0.91966 0.86693 0.88717 0.91204 0.91863
0.93398 0.93274 0.99794 0.94075 0.96391 0.96863 0.92786 0.88765
0.72675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.14 10.16 71.24 0.72 -0.42 16
2 C 0.16 3.00 6.78 42.58 0.29 3.29 16
3 C -0.17 -2.56 9.41 22.32 0.21 -2.35 16
4 C 0.01 0.13 5.95 -19.42 -0.12 0.01 16
5 C -0.12 -1.66 9.69 71.24 0.69 -0.97 16
6 C -0.22 -5.86 4.85 -19.91 -0.10 -5.96 16
7 C 0.60 18.31 5.46 86.69 0.47 18.78 16
8 O -0.57 -22.01 17.36 -3.97 -0.07 -22.08 16
9 N -0.60 -16.16 2.85 -812.03 -2.31 -18.48 16
10 C 0.11 2.94 6.28 87.26 0.55 3.48 16
11 C -0.08 -2.30 3.72 -9.31 -0.03 -2.34 16
12 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16
13 C -0.11 -3.90 5.03 30.10 0.15 -3.75 16
14 C 0.17 7.77 5.14 86.32 0.44 8.21 16
15 N -0.59 -28.40 3.20 -723.59 -2.32 -30.72 16
16 C -0.29 -15.35 9.24 84.03 0.78 -14.58 16
17 H 0.06 3.34 7.94 -2.91 -0.02 3.32 16
18 C -0.04 -2.16 4.94 84.86 0.42 -1.74 16
19 N -0.91 -52.70 10.93 21.65 0.24 -52.46 16
20 Si 0.96 44.32 29.62 68.60 2.03 46.35 16
21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16
23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16
24 C 0.17 6.56 5.65 85.98 0.49 7.05 16
25 C -0.09 -2.57 2.68 -11.19 -0.03 -2.60 16
26 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16
27 C 0.12 3.01 5.18 86.36 0.45 3.46 16
28 C 0.33 9.94 7.77 85.13 0.66 10.60 16
29 O -0.49 -15.56 13.01 -87.25 -1.14 -16.69 16
30 N -0.53 -14.54 10.28 -296.06 -3.04 -17.58 16
31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
32 H 0.11 0.51 8.07 -2.39 -0.02 0.49 16
33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
34 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16
35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.06 1.03 7.19 -2.38 -0.02 1.01 16
37 H 0.11 0.80 8.10 -2.39 -0.02 0.78 16
38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
39 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16
40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
41 H 0.05 1.70 6.86 -2.39 -0.02 1.68 16
42 H 0.05 2.69 5.74 -2.38 -0.01 2.68 16
43 H -0.02 -0.84 8.12 -2.38 -0.02 -0.86 16
44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16
45 H 0.02 0.67 7.78 -2.38 -0.02 0.65 16
46 H 0.01 0.53 8.11 -2.39 -0.02 0.51 16
47 H 0.05 1.52 7.84 -2.39 -0.02 1.50 16
48 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16
49 H 0.41 10.52 9.06 -74.06 -0.67 9.85 16
Total: -1.00 -75.69 390.78 -0.27 -75.96
By element:
Atomic # 1 Polarization: 15.21 SS G_CDS: 0.30 Total: 15.51 kcal
Atomic # 6 Polarization: 14.14 SS G_CDS: 6.04 Total: 20.18 kcal
Atomic # 7 Polarization: -111.80 SS G_CDS: -7.44 Total: -119.24 kcal
Atomic # 8 Polarization: -37.56 SS G_CDS: -1.20 Total: -38.77 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal
Total: -75.69 -0.27 -75.96 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088059832.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.848 kcal
(2) G-P(sol) polarization free energy of solvation -75.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds