Wall clock time and date at job start Wed Apr 1 2020 05:25:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.40197 * 120.36668 * 2 1
4 4 C 1.35351 * 119.94493 * 179.74363 * 3 2 1
5 5 N 1.35762 * 120.70507 * 0.27557 * 4 3 2
6 6 C 1.46493 * 119.62698 * 179.97438 * 5 4 3
7 7 C 1.50697 * 109.47280 * 89.99801 * 6 5 4
8 8 O 1.21285 * 120.00063 * 0.02562 * 7 6 5
9 9 N 1.34777 * 120.00074 * 179.97438 * 7 6 5
10 10 C 1.47761 * 125.82008 * 179.71121 * 9 7 6
11 11 C 1.56201 * 104.00732 * 154.06514 * 10 9 7
12 12 H 1.08994 * 113.91766 * 161.26090 * 11 10 9
13 13 C 1.52879 * 106.67568 * 286.47052 * 11 10 9
14 14 C 1.51601 * 111.55264 * 168.34875 * 13 11 10
15 15 N 1.44317 * 113.11892 * 320.90870 * 14 13 11
16 16 C 1.36936 * 116.35886 * 187.25730 * 15 14 13
17 17 H 1.08004 * 120.00174 * 152.60059 * 16 15 14
18 18 C 1.38813 * 120.00088 * 332.60703 * 16 15 14
19 19 N 1.31626 * 119.99785 * 335.11452 * 18 16 15
20 20 Si 1.86793 * 120.00337 * 155.11894 * 18 16 15
21 21 H 1.48505 * 109.47212 * 359.97438 * 20 18 16
22 22 H 1.48506 * 109.47304 * 119.99612 * 20 18 16
23 23 H 1.48496 * 109.47459 * 239.99966 * 20 18 16
24 24 C 1.44005 * 127.28859 * 7.28700 * 15 14 13
25 25 C 1.49948 * 116.09315 * 2.47686 * 24 15 14
26 26 H 1.08997 * 108.82353 * 141.05220 * 25 24 15
27 27 C 1.47620 * 125.82186 * 0.03120 * 9 7 6
28 28 C 1.34662 * 120.74911 * 359.97438 * 5 4 3
29 29 O 1.22058 * 119.98666 * 179.97438 * 28 5 4
30 30 C 1.36397 * 120.36654 * 180.25064 * 2 1 3
31 31 H 1.09003 * 109.46651 * 90.00195 * 1 2 3
32 32 H 1.08999 * 109.47633 * 209.99998 * 1 2 3
33 33 H 1.09005 * 109.46976 * 330.00623 * 1 2 3
34 34 H 1.07996 * 120.02999 * 0.02562 * 3 2 1
35 35 H 1.07998 * 119.65046 * 180.25082 * 4 3 2
36 36 H 1.09007 * 109.47255 * 209.99583 * 6 5 4
37 37 H 1.08997 * 109.47518 * 329.99809 * 6 5 4
38 38 H 1.08997 * 110.50309 * 272.81517 * 10 9 7
39 39 H 1.09005 * 110.49986 * 35.49351 * 10 9 7
40 40 H 1.08999 * 109.06457 * 47.81165 * 13 11 10
41 41 H 1.09001 * 109.05248 * 288.87693 * 13 11 10
42 42 H 1.09006 * 108.75220 * 199.97216 * 14 13 11
43 43 H 1.09001 * 108.66074 * 81.78594 * 14 13 11
44 44 H 0.96993 * 119.99956 * 180.02562 * 19 18 16
45 45 H 1.08995 * 108.15101 * 240.76120 * 24 15 14
46 46 H 1.08992 * 108.15458 * 124.19914 * 24 15 14
47 47 H 1.08996 * 110.07806 * 299.81552 * 27 9 7
48 48 H 1.08994 * 110.07769 * 61.37046 * 27 9 7
49 49 H 1.08008 * 120.35007 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2158 1.2096 0.0000
4 6 3.5692 1.1997 0.0052
5 7 4.2538 0.0273 0.0049
6 6 5.7187 0.0441 0.0101
7 6 6.2160 0.0466 1.4326
8 8 5.4247 0.0350 2.3517
9 7 7.5401 0.0607 1.6836
10 6 8.1666 0.0709 3.0218
11 6 9.5679 -0.5785 2.7881
12 1 10.2893 -0.3687 3.5778
13 6 9.3295 -2.0747 2.5835
14 6 10.5734 -2.7715 2.0685
15 7 11.3011 -1.9886 1.0989
16 6 12.3485 -2.6130 0.4758
17 1 12.6484 -2.3055 -0.5151
18 6 13.0247 -3.6414 1.1177
19 7 13.0264 -3.7080 2.4323
20 14 13.9324 -4.9306 0.1161
21 1 13.7777 -4.6328 -1.3305
22 1 15.3735 -4.9117 0.4745
23 1 13.3673 -6.2725 0.4079
24 6 11.0497 -0.6240 0.7135
25 6 9.9390 0.0728 1.4409
26 1 10.2353 1.1045 1.6302
27 6 8.6118 0.0753 0.6684
28 6 3.6017 -1.1508 -0.0001
29 8 4.2312 -2.1966 -0.0008
30 6 2.1965 -1.1768 -0.0051
31 1 -0.3633 0.0000 -1.0277
32 1 -0.3634 -0.8899 0.5138
33 1 -0.3633 0.8901 0.5138
34 1 1.6823 2.1486 0.0004
35 1 4.1104 2.1343 0.0093
36 1 6.0940 -0.8405 -0.5044
37 1 6.0736 0.9393 -0.5004
38 1 8.2728 1.0927 3.3859
39 1 7.5816 -0.5259 3.7217
40 1 8.5214 -2.2114 1.8649
41 1 9.0386 -2.5219 3.5340
42 1 10.2811 -3.7155 1.6084
43 1 11.2299 -2.9823 2.9127
44 1 13.4992 -4.4264 2.8809
45 1 10.8201 -0.6088 -0.3518
46 1 11.9659 -0.0537 0.8661
47 1 8.5433 -0.8120 0.0392
48 1 8.5361 0.9747 0.0574
49 1 1.6682 -2.1189 -0.0097
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001088125561.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:49
Heat of formation + Delta-G solvation = 1.133940 kcal
Electronic energy + Delta-G solvation = -30861.798747 eV
Core-core repulsion = 26790.312617 eV
Total energy + Delta-G solvation = -4071.486130 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-41.67232 -40.28457 -38.37905 -37.16089 -35.73034 -35.37863 -32.71439 -31.62227
-30.86528 -30.28936 -29.60320 -28.17812 -26.91038 -25.47073 -23.91595 -23.58789
-22.17474 -21.84962 -21.42580 -19.63067 -18.08853 -17.74890 -17.45510 -17.35371
-17.06506 -16.22353 -15.96654 -15.62503 -14.98924 -14.89912 -14.57464 -14.40253
-14.20788 -13.94751 -13.83999 -13.63586 -13.29852 -13.12093 -12.98100 -12.79646
-12.56172 -12.54016 -12.44316 -12.17574 -11.95953 -11.86427 -11.78757 -11.29639
-11.14222 -10.77268 -10.62505 -10.38380 -10.29042 -10.21495 -10.07692 -9.82898
-9.71492 -9.62530 -9.57233 -8.66535 -8.47028 -8.14784 -6.62437 -5.63338
-3.28458 0.61895 1.70799 2.24809 2.46310 2.96251 3.37719 3.46637
3.48983 3.51394 4.23223 4.25877 4.34801 4.47763 4.50078 4.68518
4.72975 4.84559 4.88364 4.97524 5.03279 5.13963 5.20890 5.28473
5.29451 5.35473 5.50491 5.51050 5.52851 5.64243 5.71577 5.79165
5.83235 5.89256 5.94039 6.10953 6.14413 6.18331 6.28713 6.31108
6.53714 6.57955 6.67641 6.76052 6.81721 6.88647 7.32283 7.43276
7.81302 7.91257 7.92916 8.01478 8.52594 9.28073 9.97787 10.27153
11.22559
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.019783 B = 0.002441 C = 0.002319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1415.024759 B =11469.307788 C =12069.518819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.013 3.987
3 C -0.232 4.232
4 C 0.146 3.854
5 N -0.482 5.482
6 C 0.074 3.926
7 C 0.518 3.482
8 O -0.536 6.536
9 N -0.610 5.610
10 C 0.108 3.892
11 C -0.082 4.082
12 H 0.103 0.897
13 C -0.121 4.121
14 C 0.156 3.844
15 N -0.585 5.585
16 C -0.269 4.269
17 H 0.066 0.934
18 C 0.006 3.994
19 N -0.887 5.887
20 Si 0.897 3.103
21 H -0.277 1.277
22 H -0.291 1.291
23 H -0.289 1.289
24 C 0.176 3.824
25 C -0.097 4.097
26 H 0.074 0.926
27 C 0.103 3.897
28 C 0.520 3.480
29 O -0.546 6.546
30 C -0.246 4.246
31 H 0.080 0.920
32 H 0.073 0.927
33 H 0.073 0.927
34 H 0.144 0.856
35 H 0.160 0.840
36 H 0.131 0.869
37 H 0.120 0.880
38 H 0.066 0.934
39 H 0.078 0.922
40 H 0.048 0.952
41 H 0.056 0.944
42 H 0.018 0.982
43 H 0.081 0.919
44 H 0.252 0.748
45 H 0.014 0.986
46 H 0.025 0.975
47 H 0.077 0.923
48 H 0.069 0.931
49 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.355 14.894 -4.726 25.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.010 3.990
3 C -0.255 4.255
4 C 0.019 3.981
5 N -0.192 5.192
6 C -0.051 4.051
7 C 0.304 3.696
8 O -0.413 6.413
9 N -0.344 5.344
10 C -0.014 4.014
11 C -0.101 4.101
12 H 0.121 0.879
13 C -0.159 4.159
14 C 0.031 3.969
15 N -0.310 5.310
16 C -0.399 4.399
17 H 0.083 0.917
18 C -0.194 4.194
19 N -0.531 5.531
20 Si 0.727 3.273
21 H -0.202 1.202
22 H -0.218 1.218
23 H -0.215 1.215
24 C 0.049 3.951
25 C -0.117 4.117
26 H 0.093 0.907
27 C -0.019 4.019
28 C 0.323 3.677
29 O -0.427 6.427
30 C -0.268 4.268
31 H 0.098 0.902
32 H 0.092 0.908
33 H 0.092 0.908
34 H 0.162 0.838
35 H 0.177 0.823
36 H 0.149 0.851
37 H 0.138 0.862
38 H 0.084 0.916
39 H 0.096 0.904
40 H 0.067 0.933
41 H 0.075 0.925
42 H 0.036 0.964
43 H 0.098 0.902
44 H 0.063 0.937
45 H 0.032 0.968
46 H 0.042 0.958
47 H 0.096 0.904
48 H 0.087 0.913
49 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -20.420 14.117 -4.128 25.165
hybrid contribution 0.572 -0.631 -0.450 0.964
sum -19.847 13.486 -4.578 24.428
Atomic orbital electron populations
1.20919 0.90396 1.03537 1.03003 1.20189 0.96726 0.92665 0.89466
1.20489 0.92291 0.98873 1.13827 1.21868 0.93616 0.89472 0.93176
1.45075 1.07203 1.07327 1.59639 1.21777 0.79518 1.07407 0.96398
1.20208 0.81312 0.77049 0.91009 1.90737 1.54146 1.50253 1.46133
1.48641 1.04414 1.72092 1.09239 1.22731 0.94081 1.00460 0.84129
1.22297 0.94241 0.96337 0.97219 0.87899 1.21593 0.99992 0.93839
1.00507 1.20247 0.90369 0.91288 0.95015 1.42681 1.33687 1.07161
1.47446 1.19140 1.08803 1.14746 0.97197 0.91664 1.24974 0.98161
1.01282 0.94973 1.70001 1.43854 1.32487 1.06767 0.86309 0.78924
0.82031 0.80014 1.20211 1.21818 1.21516 1.19336 0.93796 0.86486
0.95433 1.21497 0.94023 1.00420 0.95729 0.90743 1.22317 0.86637
1.01746 0.91228 1.17118 0.89380 0.82477 0.78768 1.90994 1.69063
1.30193 1.52499 1.21926 0.92220 0.99586 1.13047 0.90156 0.90830
0.90813 0.83789 0.82295 0.85095 0.86174 0.91566 0.90390 0.93341
0.92525 0.96434 0.90154 0.93719 0.96847 0.95758 0.90430 0.91286
0.83556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.68 10.03 36.01 0.36 -0.32 16
2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16
3 C -0.23 -1.76 9.71 -39.88 -0.39 -2.15 16
4 C 0.15 1.23 10.28 -16.84 -0.17 1.06 16
5 N -0.48 -5.79 2.07 -121.07 -0.25 -6.04 16
6 C 0.07 0.84 5.02 -5.20 -0.03 0.81 16
7 C 0.52 7.60 7.92 -10.99 -0.09 7.51 16
8 O -0.54 -9.81 16.69 5.55 0.09 -9.72 16
9 N -0.61 -8.52 2.80 -169.41 -0.47 -8.99 16
10 C 0.11 1.54 6.25 -1.63 -0.01 1.53 16
11 C -0.08 -1.31 3.78 -88.35 -0.33 -1.64 16
12 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16
13 C -0.12 -2.31 4.98 -27.50 -0.14 -2.45 16
14 C 0.16 3.70 5.13 -5.91 -0.03 3.67 16
15 N -0.59 -14.16 3.23 -179.59 -0.58 -14.74 16
16 C -0.27 -7.27 9.26 -15.06 -0.14 -7.41 16
17 H 0.07 1.74 7.94 -52.48 -0.42 1.32 16
18 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16
19 N -0.89 -25.37 10.92 55.49 0.61 -24.77 16
20 Si 0.90 21.66 29.62 -169.99 -5.04 16.62 16
21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
24 C 0.18 3.41 5.67 -6.88 -0.04 3.37 16
25 C -0.10 -1.47 2.68 -91.23 -0.24 -1.71 16
26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16
27 C 0.10 1.32 5.19 -3.14 -0.02 1.31 16
28 C 0.52 7.84 7.40 -15.44 -0.11 7.72 16
29 O -0.55 -10.52 16.64 4.87 0.08 -10.44 16
30 C -0.25 -2.95 9.65 -39.38 -0.38 -3.33 16
31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16
33 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16
34 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16
35 H 0.16 0.76 8.04 -52.49 -0.42 0.34 16
36 H 0.13 1.62 7.39 -51.92 -0.38 1.23 16
37 H 0.12 0.80 8.01 -51.93 -0.42 0.38 16
38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
39 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16
40 H 0.05 0.95 6.77 -51.93 -0.35 0.59 16
41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
42 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16
43 H 0.08 2.17 5.75 -51.93 -0.30 1.87 16
44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
45 H 0.01 0.26 7.78 -51.93 -0.40 -0.14 16
46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
47 H 0.08 1.11 7.83 -51.93 -0.41 0.70 16
48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
49 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16
LS Contribution 390.24 15.07 5.88 5.88
Total: -1.00 -36.10 390.24 -9.85 -45.95
By element:
Atomic # 1 Polarization: 6.39 SS G_CDS: -7.71 Total: -1.32 kcal
Atomic # 6 Polarization: 10.02 SS G_CDS: -2.46 Total: 7.56 kcal
Atomic # 7 Polarization: -53.84 SS G_CDS: -0.70 Total: -54.54 kcal
Atomic # 8 Polarization: -20.33 SS G_CDS: 0.17 Total: -20.16 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.62 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -36.10 -9.85 -45.95 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088125561.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.084 kcal
(2) G-P(sol) polarization free energy of solvation -36.099 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.134 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds