Wall clock time and date at job start Wed Apr 1 2020 05:25:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.40197 * 120.36668 * 2 1
4 4 C 1.35351 * 119.94493 * 179.74363 * 3 2 1
5 5 N 1.35762 * 120.70507 * 0.27557 * 4 3 2
6 6 C 1.46493 * 119.62698 * 179.97438 * 5 4 3
7 7 C 1.50697 * 109.47280 * 89.99801 * 6 5 4
8 8 O 1.21285 * 120.00063 * 0.02562 * 7 6 5
9 9 N 1.34777 * 120.00074 * 179.97438 * 7 6 5
10 10 C 1.47761 * 125.82008 * 179.71121 * 9 7 6
11 11 C 1.56201 * 104.00732 * 154.06514 * 10 9 7
12 12 H 1.08994 * 113.91766 * 161.26090 * 11 10 9
13 13 C 1.52879 * 106.67568 * 286.47052 * 11 10 9
14 14 C 1.51601 * 111.55264 * 168.34875 * 13 11 10
15 15 N 1.44317 * 113.11892 * 320.90870 * 14 13 11
16 16 C 1.36936 * 116.35886 * 187.25730 * 15 14 13
17 17 H 1.08004 * 120.00174 * 152.60059 * 16 15 14
18 18 C 1.38813 * 120.00088 * 332.60703 * 16 15 14
19 19 N 1.31626 * 119.99785 * 335.11452 * 18 16 15
20 20 Si 1.86793 * 120.00337 * 155.11894 * 18 16 15
21 21 H 1.48505 * 109.47212 * 359.97438 * 20 18 16
22 22 H 1.48506 * 109.47304 * 119.99612 * 20 18 16
23 23 H 1.48496 * 109.47459 * 239.99966 * 20 18 16
24 24 C 1.44005 * 127.28859 * 7.28700 * 15 14 13
25 25 C 1.49948 * 116.09315 * 2.47686 * 24 15 14
26 26 H 1.08997 * 108.82353 * 141.05220 * 25 24 15
27 27 C 1.47620 * 125.82186 * 0.03120 * 9 7 6
28 28 C 1.34662 * 120.74911 * 359.97438 * 5 4 3
29 29 O 1.22058 * 119.98666 * 179.97438 * 28 5 4
30 30 C 1.36397 * 120.36654 * 180.25064 * 2 1 3
31 31 H 1.09003 * 109.46651 * 90.00195 * 1 2 3
32 32 H 1.08999 * 109.47633 * 209.99998 * 1 2 3
33 33 H 1.09005 * 109.46976 * 330.00623 * 1 2 3
34 34 H 1.07996 * 120.02999 * 0.02562 * 3 2 1
35 35 H 1.07998 * 119.65046 * 180.25082 * 4 3 2
36 36 H 1.09007 * 109.47255 * 209.99583 * 6 5 4
37 37 H 1.08997 * 109.47518 * 329.99809 * 6 5 4
38 38 H 1.08997 * 110.50309 * 272.81517 * 10 9 7
39 39 H 1.09005 * 110.49986 * 35.49351 * 10 9 7
40 40 H 1.08999 * 109.06457 * 47.81165 * 13 11 10
41 41 H 1.09001 * 109.05248 * 288.87693 * 13 11 10
42 42 H 1.09006 * 108.75220 * 199.97216 * 14 13 11
43 43 H 1.09001 * 108.66074 * 81.78594 * 14 13 11
44 44 H 0.96993 * 119.99956 * 180.02562 * 19 18 16
45 45 H 1.08995 * 108.15101 * 240.76120 * 24 15 14
46 46 H 1.08992 * 108.15458 * 124.19914 * 24 15 14
47 47 H 1.08996 * 110.07806 * 299.81552 * 27 9 7
48 48 H 1.08994 * 110.07769 * 61.37046 * 27 9 7
49 49 H 1.08008 * 120.35007 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2158 1.2096 0.0000
4 6 3.5692 1.1997 0.0052
5 7 4.2538 0.0273 0.0049
6 6 5.7187 0.0441 0.0101
7 6 6.2160 0.0466 1.4326
8 8 5.4247 0.0350 2.3517
9 7 7.5401 0.0607 1.6836
10 6 8.1666 0.0709 3.0218
11 6 9.5679 -0.5785 2.7881
12 1 10.2893 -0.3687 3.5778
13 6 9.3295 -2.0747 2.5835
14 6 10.5734 -2.7715 2.0685
15 7 11.3011 -1.9886 1.0989
16 6 12.3485 -2.6130 0.4758
17 1 12.6484 -2.3055 -0.5151
18 6 13.0247 -3.6414 1.1177
19 7 13.0264 -3.7080 2.4323
20 14 13.9324 -4.9306 0.1161
21 1 13.7777 -4.6328 -1.3305
22 1 15.3735 -4.9117 0.4745
23 1 13.3673 -6.2725 0.4079
24 6 11.0497 -0.6240 0.7135
25 6 9.9390 0.0728 1.4409
26 1 10.2353 1.1045 1.6302
27 6 8.6118 0.0753 0.6684
28 6 3.6017 -1.1508 -0.0001
29 8 4.2312 -2.1966 -0.0008
30 6 2.1965 -1.1768 -0.0051
31 1 -0.3633 0.0000 -1.0277
32 1 -0.3634 -0.8899 0.5138
33 1 -0.3633 0.8901 0.5138
34 1 1.6823 2.1486 0.0004
35 1 4.1104 2.1343 0.0093
36 1 6.0940 -0.8405 -0.5044
37 1 6.0736 0.9393 -0.5004
38 1 8.2728 1.0927 3.3859
39 1 7.5816 -0.5259 3.7217
40 1 8.5214 -2.2114 1.8649
41 1 9.0386 -2.5219 3.5340
42 1 10.2811 -3.7155 1.6084
43 1 11.2299 -2.9823 2.9127
44 1 13.4992 -4.4264 2.8809
45 1 10.8201 -0.6088 -0.3518
46 1 11.9659 -0.0537 0.8661
47 1 8.5433 -0.8120 0.0392
48 1 8.5361 0.9747 0.0574
49 1 1.6682 -2.1189 -0.0097
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088125561.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:46
Heat of formation + Delta-G solvation = -21.962803 kcal
Electronic energy + Delta-G solvation = -30862.800297 eV
Core-core repulsion = 26790.312617 eV
Total energy + Delta-G solvation = -4072.487680 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 3.10 seconds
Orbital eigenvalues (eV)
-42.58047 -41.48680 -39.67822 -38.13758 -37.33285 -36.24160 -34.30595 -33.17439
-32.23558 -31.36273 -30.52433 -29.40939 -27.85091 -27.03710 -25.21312 -24.66970
-23.59255 -23.20080 -22.49427 -20.68917 -19.51060 -18.96515 -18.58737 -18.44839
-18.30434 -17.29110 -17.01146 -16.91472 -16.65058 -16.06712 -15.85435 -15.65728
-15.42654 -15.18327 -15.04433 -14.75538 -14.61630 -14.18045 -14.16295 -13.85047
-13.80911 -13.58003 -13.38685 -13.31863 -13.03739 -13.00751 -12.91509 -12.86555
-12.56485 -12.47121 -12.21286 -12.06752 -11.85883 -11.56544 -11.40553 -11.23115
-11.18404 -11.12198 -10.62182 -10.54203 -9.76212 -9.00659 -8.67003 -7.70269
-5.40055 -0.13205 0.90557 1.33092 1.42261 1.42617 1.46873 1.56189
1.96454 2.49781 2.64127 3.20901 3.22036 3.46173 3.57768 3.66419
3.71935 3.74496 3.81036 3.86169 4.03449 4.12946 4.13280 4.31215
4.33433 4.38520 4.45447 4.51316 4.60094 4.65343 4.74803 4.78880
4.83603 4.87541 4.88452 4.94502 5.03121 5.04935 5.09475 5.16757
5.24056 5.27164 5.33835 5.40224 5.48002 5.66243 5.68362 5.90252
6.04223 6.33494 6.43502 6.88052 6.97297 7.20779 8.04215 8.23492
9.11292
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.019783 B = 0.002441 C = 0.002319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1415.024759 B =11469.307788 C =12069.518819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.035 3.965
3 C -0.229 4.229
4 C 0.140 3.860
5 N -0.484 5.484
6 C 0.076 3.924
7 C 0.515 3.485
8 O -0.579 6.579
9 N -0.609 5.609
10 C 0.117 3.883
11 C -0.081 4.081
12 H 0.103 0.897
13 C -0.109 4.109
14 C 0.167 3.833
15 N -0.597 5.597
16 C -0.280 4.280
17 H 0.067 0.933
18 C -0.047 4.047
19 N -0.917 5.917
20 Si 0.957 3.043
21 H -0.266 1.266
22 H -0.288 1.288
23 H -0.296 1.296
24 C 0.170 3.830
25 C -0.094 4.094
26 H 0.112 0.888
27 C 0.109 3.891
28 C 0.499 3.501
29 O -0.616 6.616
30 C -0.294 4.294
31 H 0.098 0.902
32 H 0.070 0.930
33 H 0.097 0.903
34 H 0.187 0.813
35 H 0.206 0.794
36 H 0.114 0.886
37 H 0.178 0.822
38 H 0.098 0.902
39 H 0.058 0.942
40 H 0.041 0.959
41 H 0.056 0.944
42 H -0.021 1.021
43 H 0.049 0.951
44 H 0.249 0.751
45 H 0.026 0.974
46 H 0.018 0.982
47 H 0.059 0.941
48 H 0.121 0.879
49 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.925 19.410 -6.136 29.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.031 3.969
3 C -0.250 4.250
4 C 0.014 3.986
5 N -0.193 5.193
6 C -0.048 4.048
7 C 0.303 3.697
8 O -0.459 6.459
9 N -0.342 5.342
10 C -0.005 4.005
11 C -0.100 4.100
12 H 0.121 0.879
13 C -0.147 4.147
14 C 0.041 3.959
15 N -0.321 5.321
16 C -0.410 4.410
17 H 0.085 0.915
18 C -0.244 4.244
19 N -0.562 5.562
20 Si 0.785 3.215
21 H -0.191 1.191
22 H -0.215 1.215
23 H -0.223 1.223
24 C 0.045 3.955
25 C -0.113 4.113
26 H 0.130 0.870
27 C -0.013 4.013
28 C 0.305 3.695
29 O -0.504 6.504
30 C -0.316 4.316
31 H 0.117 0.883
32 H 0.089 0.911
33 H 0.115 0.885
34 H 0.204 0.796
35 H 0.223 0.777
36 H 0.132 0.868
37 H 0.196 0.804
38 H 0.116 0.884
39 H 0.077 0.923
40 H 0.059 0.941
41 H 0.074 0.926
42 H -0.003 1.003
43 H 0.066 0.934
44 H 0.058 0.942
45 H 0.044 0.956
46 H 0.036 0.964
47 H 0.077 0.923
48 H 0.138 0.862
49 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -21.995 18.707 -5.573 29.407
hybrid contribution 0.999 -1.943 -0.025 2.185
sum -20.996 16.764 -5.598 27.445
Atomic orbital electron populations
1.21044 0.87836 1.04594 1.04404 1.20665 0.98594 0.92023 0.85607
1.21088 0.92318 0.99805 1.11834 1.22755 0.94490 0.89557 0.91777
1.45105 1.07692 1.07676 1.58781 1.21943 0.79294 1.09320 0.94281
1.20767 0.80992 0.75962 0.91955 1.90715 1.55137 1.52288 1.47733
1.48685 1.04605 1.71574 1.09340 1.22628 0.92113 1.01532 0.84258
1.22235 0.95762 0.93729 0.98267 0.87887 1.21409 0.97096 0.96367
0.99877 1.19923 0.91585 0.90762 0.93628 1.42903 1.32914 1.09283
1.47034 1.19478 1.08897 1.15183 0.97457 0.91514 1.25704 0.99720
1.03109 0.95849 1.70149 1.45095 1.32904 1.08052 0.85378 0.77700
0.79222 0.79199 1.19068 1.21532 1.22293 1.19508 0.95365 0.84070
0.96577 1.21448 0.93817 1.01413 0.94573 0.86975 1.22365 0.84798
1.03454 0.90675 1.17606 0.90455 0.82689 0.78778 1.90932 1.70342
1.32530 1.56616 1.21871 0.91327 1.00944 1.17431 0.88322 0.91089
0.88461 0.79572 0.77715 0.86761 0.80445 0.88442 0.92300 0.94055
0.92556 1.00294 0.93353 0.94182 0.95647 0.96416 0.92272 0.86155
0.84469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.01 10.03 71.24 0.71 -0.29 16
2 C 0.04 0.55 5.89 -19.82 -0.12 0.44 16
3 C -0.23 -2.52 9.71 22.08 0.21 -2.30 16
4 C 0.14 1.81 10.28 83.42 0.86 2.66 16
5 N -0.48 -10.94 2.07 -655.08 -1.36 -12.30 16
6 C 0.08 1.56 5.02 85.63 0.43 1.99 16
7 C 0.51 14.25 7.92 87.66 0.69 14.94 16
8 O -0.58 -20.83 16.69 -3.05 -0.05 -20.88 16
9 N -0.61 -15.52 2.80 -808.28 -2.27 -17.79 16
10 C 0.12 3.08 6.25 87.25 0.55 3.63 16
11 C -0.08 -2.48 3.78 -9.33 -0.04 -2.52 16
12 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16
13 C -0.11 -4.30 4.98 30.09 0.15 -4.15 16
14 C 0.17 8.32 5.13 86.33 0.44 8.77 16
15 N -0.60 -29.42 3.23 -722.09 -2.33 -31.75 16
16 C -0.28 -15.37 9.26 84.03 0.78 -14.60 16
17 H 0.07 3.58 7.94 -2.91 -0.02 3.55 16
18 C -0.05 -2.65 4.94 84.86 0.42 -2.23 16
19 N -0.92 -54.45 10.92 21.65 0.24 -54.21 16
20 Si 0.96 45.60 29.62 68.60 2.03 47.64 16
21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16
22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16
23 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16
24 C 0.17 6.37 5.67 85.86 0.49 6.86 16
25 C -0.09 -2.54 2.68 -11.19 -0.03 -2.57 16
26 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16
27 C 0.11 2.42 5.19 86.35 0.45 2.87 16
28 C 0.50 15.73 7.40 84.82 0.63 16.35 16
29 O -0.62 -25.87 16.64 -5.50 -0.09 -25.97 16
30 C -0.29 -7.35 9.65 22.40 0.22 -7.13 16
31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16
33 H 0.10 0.40 8.10 -2.38 -0.02 0.38 16
34 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16
35 H 0.21 0.66 8.04 -2.91 -0.02 0.64 16
36 H 0.11 2.81 7.39 -2.38 -0.02 2.79 16
37 H 0.18 1.42 8.01 -2.39 -0.02 1.40 16
38 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.06 1.80 7.93 -2.38 -0.02 1.78 16
40 H 0.04 1.67 6.77 -2.39 -0.02 1.65 16
41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
42 H -0.02 -1.18 8.12 -2.38 -0.02 -1.20 16
43 H 0.05 2.78 5.75 -2.39 -0.01 2.76 16
44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16
45 H 0.03 0.91 7.78 -2.39 -0.02 0.89 16
46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
47 H 0.06 1.58 7.83 -2.39 -0.02 1.56 16
48 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16
49 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16
Total: -1.00 -87.70 390.24 3.96 -83.75
By element:
Atomic # 1 Polarization: 7.85 SS G_CDS: 0.94 Total: 8.79 kcal
Atomic # 6 Polarization: 15.87 SS G_CDS: 6.84 Total: 22.72 kcal
Atomic # 7 Polarization: -110.33 SS G_CDS: -5.72 Total: -116.05 kcal
Atomic # 8 Polarization: -46.70 SS G_CDS: -0.14 Total: -46.85 kcal
Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.64 kcal
Total: -87.70 3.96 -83.75 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088125561.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.785 kcal
(2) G-P(sol) polarization free energy of solvation -87.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.919 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.747 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.10 seconds