Wall clock time and date at job start Wed Apr 1 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35918 * 117.00237 * 2 1 4 4 C 1.38860 * 120.40166 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99182 * 180.02562 * 4 3 2 6 6 C 1.31678 * 121.94854 * 359.97438 * 5 4 3 7 7 C 1.39525 * 120.68799 * 0.02562 * 6 5 4 8 8 C 1.47860 * 120.52667 * 179.97438 * 7 6 5 9 9 O 1.21550 * 119.99490 * 216.30410 * 8 7 6 10 10 N 1.34773 * 120.00091 * 36.30447 * 8 7 6 11 11 C 1.47214 * 126.70260 * 4.68214 * 10 8 7 12 12 C 1.54101 * 106.20961 * 148.63892 * 11 10 8 13 13 H 1.09002 * 112.44729 * 141.26940 * 12 11 10 14 14 C 1.53780 * 109.54622 * 266.30539 * 12 11 10 15 15 N 1.47217 * 106.37806 * 131.53961 * 14 12 11 16 16 C 1.36937 * 126.70549 * 148.75080 * 15 14 12 17 17 H 1.07999 * 120.00111 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99844 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47014 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47093 * 119.99850 * 20 18 16 23 23 H 1.48498 * 109.47107 * 240.00332 * 20 18 16 24 24 C 1.47221 * 106.59286 * 328.72470 * 15 14 12 25 25 C 1.53778 * 106.37397 * 31.27592 * 24 15 14 26 26 C 1.53001 * 112.60443 * 103.51258 * 25 24 15 27 27 C 1.47212 * 126.70021 * 184.99262 * 10 8 7 28 28 C 1.38841 * 120.40762 * 179.72316 * 3 2 1 29 29 C 1.50704 * 120.87492 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.47170 * 60.00322 * 1 2 3 31 31 H 1.09000 * 109.46996 * 300.00321 * 1 2 3 32 32 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.50096 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.65554 * 180.02562 * 6 5 4 35 35 H 1.08995 * 110.07489 * 267.95576 * 11 10 8 36 36 H 1.08997 * 110.07481 * 29.49856 * 11 10 8 37 37 H 1.09001 * 110.07513 * 250.76473 * 14 12 11 38 38 H 1.09000 * 110.07873 * 12.25508 * 14 12 11 39 39 H 0.97002 * 119.99920 * 180.02562 * 19 18 16 40 40 H 1.08997 * 110.07276 * 272.04438 * 24 15 14 41 41 H 1.08998 * 110.07170 * 150.50491 * 24 15 14 42 42 H 1.08999 * 109.47193 * 182.60128 * 26 25 24 43 43 H 1.09000 * 109.47063 * 302.59802 * 26 25 24 44 44 H 1.09001 * 109.47092 * 62.59867 * 26 25 24 45 45 H 1.09000 * 110.07706 * 330.50336 * 27 10 8 46 46 H 1.09004 * 110.07868 * 91.98723 * 27 10 8 47 47 H 1.08997 * 109.47063 * 95.23389 * 29 28 3 48 48 H 1.09000 * 109.46396 * 215.22847 * 29 28 3 49 49 H 1.08991 * 109.47283 * 335.23023 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8847 3.5620 -0.0010 6 6 3.1953 3.6891 -0.0006 7 6 4.0198 2.5635 0.0000 8 6 5.4911 2.7103 -0.0001 9 8 6.1800 1.9262 -0.6230 10 7 6.0683 3.7135 0.6905 11 6 5.3900 4.6823 1.5671 12 6 6.4025 5.0469 2.6701 13 1 6.3655 6.1032 2.9364 14 6 6.1806 4.1403 3.8922 15 7 7.5060 3.6251 4.2730 16 6 7.9280 3.3053 5.5359 17 1 8.9300 2.9342 5.6927 18 6 7.0678 3.4583 6.6146 19 7 5.8465 3.9102 6.4235 20 14 7.6437 3.0228 8.3374 21 1 9.0475 2.5414 8.2832 22 1 7.5668 4.2263 9.2040 23 1 6.7749 1.9551 8.8946 24 6 8.2891 3.5201 3.0308 25 6 7.7856 4.6401 2.1050 26 6 8.7489 5.8270 2.0402 27 6 7.4993 4.0583 0.7106 28 6 3.4320 1.2935 0.0058 29 6 4.2808 0.0482 0.0128 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2196 2.3226 -0.0014 34 1 3.6366 4.6747 -0.0006 35 1 5.1144 5.5712 0.9997 36 1 4.5022 4.2297 2.0087 37 1 5.7533 4.7166 4.7129 38 1 5.5185 3.3149 3.6306 39 1 5.2456 4.0174 7.1774 40 1 8.1246 2.5481 2.5658 41 1 9.3490 3.6589 3.2438 42 1 8.3225 6.6070 1.4095 43 1 8.9101 6.2194 3.0443 44 1 9.7004 5.5002 1.6207 45 1 8.1018 3.1648 0.5471 46 1 7.7161 4.8009 -0.0573 47 1 4.5674 -0.2019 -1.0087 48 1 5.1765 0.2225 0.6090 49 1 3.7127 -0.7764 0.4430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091783369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:01 Heat of formation + Delta-G solvation = 2.628276 kcal Electronic energy + Delta-G solvation = -31625.255197 eV Core-core repulsion = 27553.833866 eV Total energy + Delta-G solvation = -4071.421331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.18894 -40.13407 -38.60801 -37.81728 -35.07512 -33.79244 -32.98816 -31.11306 -30.62678 -30.03328 -28.05574 -27.84443 -26.48838 -25.87401 -25.17490 -23.79956 -22.41229 -22.32263 -20.27182 -19.74722 -18.80738 -17.90488 -17.60811 -16.88212 -16.51428 -16.26127 -16.01350 -15.60026 -15.31728 -14.76342 -14.46545 -14.16881 -13.97971 -13.72137 -13.57428 -13.40729 -13.06980 -12.85950 -12.79982 -12.63956 -12.53289 -12.23563 -12.09675 -11.83021 -11.78305 -11.70988 -11.61464 -11.38971 -11.00112 -10.93880 -10.80862 -10.26746 -10.14309 -10.08303 -9.97632 -9.77424 -9.54167 -9.49898 -9.39341 -8.74454 -8.60587 -8.46904 -6.90210 -5.67208 -3.11899 0.58516 1.09184 2.65998 2.89582 3.19292 3.37431 3.43281 3.45481 3.65112 4.20441 4.35056 4.44983 4.47456 4.63305 4.69822 4.84547 4.87816 4.89208 5.08818 5.11532 5.20769 5.24038 5.41291 5.45858 5.50432 5.57401 5.61055 5.65881 5.72560 5.74960 5.87178 5.96598 6.01010 6.05177 6.10889 6.15330 6.25589 6.32657 6.36779 6.40593 6.51875 6.63381 6.78438 6.91419 6.94064 7.41212 7.58113 7.64383 7.70735 7.79557 8.20031 8.36136 9.17990 9.78902 10.46515 11.34062 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.003589 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.359348 B = 7799.721253 C = 9127.548518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.067 3.933 4 C 0.038 3.962 5 N -0.455 5.455 6 C 0.100 3.900 7 C -0.142 4.142 8 C 0.584 3.416 9 O -0.533 6.533 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.115 4.115 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.595 5.595 16 C -0.217 4.217 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.145 3.855 25 C -0.087 4.087 26 C -0.121 4.121 27 C 0.120 3.880 28 C -0.016 4.016 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.006 0.994 39 H 0.252 0.748 40 H 0.019 0.981 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 -0.432 -14.678 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.020 3.980 4 C -0.120 4.120 5 N -0.164 5.164 6 C -0.058 4.058 7 C -0.147 4.147 8 C 0.372 3.628 9 O -0.411 6.411 10 N -0.333 5.333 11 C -0.019 4.019 12 C -0.135 4.135 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.318 5.318 16 C -0.345 4.345 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.018 3.982 25 C -0.089 4.089 26 C -0.179 4.179 27 C -0.002 4.002 28 C -0.025 4.025 29 C -0.163 4.163 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.141 0.859 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.305 -0.431 -14.799 16.975 hybrid contribution 0.329 -0.808 0.911 1.261 sum -7.976 -1.239 -13.888 16.063 Atomic orbital electron populations 1.23141 0.77993 1.04447 1.01583 1.86092 1.21515 1.25545 1.88641 1.19697 0.92201 0.86067 1.00067 1.23039 1.00622 0.87110 1.01210 1.67541 1.11791 1.25911 1.11194 1.23000 0.88527 0.98357 0.95950 1.20660 0.94669 0.93877 1.05455 1.17472 0.86391 0.79742 0.79235 1.90771 1.64154 1.41911 1.44258 1.48304 1.09481 1.30086 1.45438 1.22458 0.97051 0.91228 0.91200 1.23171 0.92186 1.01584 0.96605 0.89239 1.21968 0.87591 0.94379 0.94232 1.44504 1.10351 1.75557 1.01363 1.19147 0.97592 1.35915 0.81881 0.90320 1.24759 0.95949 1.01887 0.98096 1.69604 1.06100 1.52289 1.29063 0.85985 0.77708 0.77583 0.84165 1.20519 1.21713 1.21781 1.21422 0.95328 0.93873 0.87601 1.22175 0.96239 0.96853 0.93666 1.21612 0.97876 0.96147 1.02267 1.22125 0.81088 1.00095 0.96917 1.19733 0.90883 0.95660 0.96246 1.20711 0.98832 0.93114 1.03622 0.92427 0.92249 0.87822 0.82159 0.81773 0.91674 0.90121 0.85937 0.97655 0.93712 0.96378 0.93854 0.93010 0.91595 0.92876 0.90122 0.91675 0.89856 0.90265 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.44 9.58 -19.48 -0.19 -3.63 16 3 C 0.07 0.87 6.68 -39.13 -0.26 0.61 16 4 C 0.04 0.45 10.21 -17.30 -0.18 0.27 16 5 N -0.46 -6.18 10.34 -12.80 -0.13 -6.31 16 6 C 0.10 1.38 9.21 -17.14 -0.16 1.22 16 7 C -0.14 -2.16 5.42 -104.84 -0.57 -2.73 16 8 C 0.58 9.84 7.02 -12.32 -0.09 9.75 16 9 O -0.53 -10.12 15.25 5.32 0.08 -10.04 16 10 N -0.60 -9.57 3.32 -172.49 -0.57 -10.14 16 11 C 0.10 1.55 4.62 -3.08 -0.01 1.53 16 12 C -0.11 -2.01 3.68 -88.66 -0.33 -2.34 16 13 H 0.09 1.48 7.88 -51.93 -0.41 1.07 16 14 C 0.14 3.35 5.71 -3.24 -0.02 3.33 16 15 N -0.59 -14.87 3.39 -171.13 -0.58 -15.45 16 16 C -0.22 -5.95 10.34 -15.06 -0.16 -6.10 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.25 10.08 55.49 0.56 -25.69 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.14 2.98 6.38 -3.24 -0.02 2.96 16 25 C -0.09 -1.44 1.09 -152.72 -0.17 -1.61 16 26 C -0.12 -1.69 8.49 37.16 0.32 -1.37 16 27 C 0.12 1.83 5.97 -3.25 -0.02 1.81 16 28 C -0.02 -0.24 5.96 -103.76 -0.62 -0.86 16 29 C -0.11 -1.52 8.63 36.01 0.31 -1.21 16 30 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.06 0.35 7.68 -51.93 -0.40 -0.04 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.16 1.38 6.30 -52.49 -0.33 1.05 16 34 H 0.17 1.95 6.01 -52.49 -0.32 1.63 16 35 H 0.07 0.77 7.42 -51.93 -0.39 0.39 16 36 H 0.08 1.28 6.19 -51.93 -0.32 0.96 16 37 H 0.12 3.23 5.45 -51.93 -0.28 2.95 16 38 H 0.01 0.14 7.42 -51.93 -0.39 -0.24 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.40 7.39 -51.93 -0.38 0.02 16 41 H 0.04 0.87 7.85 -51.93 -0.41 0.46 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.32 7.24 -51.93 -0.38 0.94 16 46 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 47 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.08 1.28 6.87 -51.93 -0.36 0.93 16 49 H 0.07 0.95 7.47 -51.93 -0.39 0.56 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -32.46 381.12 -8.39 -40.84 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.21 Total: 1.86 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.07 Total: 6.00 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.73 Total: -57.60 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.46 -8.39 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091783369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.472 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds