Wall clock time and date at job start Wed Apr 1 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35918 * 117.00237 * 2 1 4 4 C 1.38860 * 120.40166 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99182 * 180.02562 * 4 3 2 6 6 C 1.31678 * 121.94854 * 359.97438 * 5 4 3 7 7 C 1.39525 * 120.68799 * 0.02562 * 6 5 4 8 8 C 1.47860 * 120.52667 * 179.97438 * 7 6 5 9 9 O 1.21550 * 119.99490 * 216.30410 * 8 7 6 10 10 N 1.34773 * 120.00091 * 36.30447 * 8 7 6 11 11 C 1.47214 * 126.70260 * 4.68214 * 10 8 7 12 12 C 1.54101 * 106.20961 * 148.63892 * 11 10 8 13 13 H 1.09002 * 112.44729 * 141.26940 * 12 11 10 14 14 C 1.53780 * 109.54622 * 266.30539 * 12 11 10 15 15 N 1.47217 * 106.37806 * 131.53961 * 14 12 11 16 16 C 1.36937 * 126.70549 * 148.75080 * 15 14 12 17 17 H 1.07999 * 120.00111 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99844 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47014 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47093 * 119.99850 * 20 18 16 23 23 H 1.48498 * 109.47107 * 240.00332 * 20 18 16 24 24 C 1.47221 * 106.59286 * 328.72470 * 15 14 12 25 25 C 1.53778 * 106.37397 * 31.27592 * 24 15 14 26 26 C 1.53001 * 112.60443 * 103.51258 * 25 24 15 27 27 C 1.47212 * 126.70021 * 184.99262 * 10 8 7 28 28 C 1.38841 * 120.40762 * 179.72316 * 3 2 1 29 29 C 1.50704 * 120.87492 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.47170 * 60.00322 * 1 2 3 31 31 H 1.09000 * 109.46996 * 300.00321 * 1 2 3 32 32 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.50096 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.65554 * 180.02562 * 6 5 4 35 35 H 1.08995 * 110.07489 * 267.95576 * 11 10 8 36 36 H 1.08997 * 110.07481 * 29.49856 * 11 10 8 37 37 H 1.09001 * 110.07513 * 250.76473 * 14 12 11 38 38 H 1.09000 * 110.07873 * 12.25508 * 14 12 11 39 39 H 0.97002 * 119.99920 * 180.02562 * 19 18 16 40 40 H 1.08997 * 110.07276 * 272.04438 * 24 15 14 41 41 H 1.08998 * 110.07170 * 150.50491 * 24 15 14 42 42 H 1.08999 * 109.47193 * 182.60128 * 26 25 24 43 43 H 1.09000 * 109.47063 * 302.59802 * 26 25 24 44 44 H 1.09001 * 109.47092 * 62.59867 * 26 25 24 45 45 H 1.09000 * 110.07706 * 330.50336 * 27 10 8 46 46 H 1.09004 * 110.07868 * 91.98723 * 27 10 8 47 47 H 1.08997 * 109.47063 * 95.23389 * 29 28 3 48 48 H 1.09000 * 109.46396 * 215.22847 * 29 28 3 49 49 H 1.08991 * 109.47283 * 335.23023 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8847 3.5620 -0.0010 6 6 3.1953 3.6891 -0.0006 7 6 4.0198 2.5635 0.0000 8 6 5.4911 2.7103 -0.0001 9 8 6.1800 1.9262 -0.6230 10 7 6.0683 3.7135 0.6905 11 6 5.3900 4.6823 1.5671 12 6 6.4025 5.0469 2.6701 13 1 6.3655 6.1032 2.9364 14 6 6.1806 4.1403 3.8922 15 7 7.5060 3.6251 4.2730 16 6 7.9280 3.3053 5.5359 17 1 8.9300 2.9342 5.6927 18 6 7.0678 3.4583 6.6146 19 7 5.8465 3.9102 6.4235 20 14 7.6437 3.0228 8.3374 21 1 9.0475 2.5414 8.2832 22 1 7.5668 4.2263 9.2040 23 1 6.7749 1.9551 8.8946 24 6 8.2891 3.5201 3.0308 25 6 7.7856 4.6401 2.1050 26 6 8.7489 5.8270 2.0402 27 6 7.4993 4.0583 0.7106 28 6 3.4320 1.2935 0.0058 29 6 4.2808 0.0482 0.0128 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2196 2.3226 -0.0014 34 1 3.6366 4.6747 -0.0006 35 1 5.1144 5.5712 0.9997 36 1 4.5022 4.2297 2.0087 37 1 5.7533 4.7166 4.7129 38 1 5.5185 3.3149 3.6306 39 1 5.2456 4.0174 7.1774 40 1 8.1246 2.5481 2.5658 41 1 9.3490 3.6589 3.2438 42 1 8.3225 6.6070 1.4095 43 1 8.9101 6.2194 3.0443 44 1 9.7004 5.5002 1.6207 45 1 8.1018 3.1648 0.5471 46 1 7.7161 4.8009 -0.0573 47 1 4.5674 -0.2019 -1.0087 48 1 5.1765 0.2225 0.6090 49 1 3.7127 -0.7764 0.4430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091783369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:59 Heat of formation + Delta-G solvation = -18.464230 kcal Electronic energy + Delta-G solvation = -31626.169837 eV Core-core repulsion = 27553.833866 eV Total energy + Delta-G solvation = -4072.335971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.28327 -41.36505 -39.82680 -38.88490 -36.71087 -34.86897 -34.60501 -32.70725 -31.84155 -31.58052 -29.12073 -28.53088 -27.93315 -27.40287 -26.74245 -25.02074 -23.80194 -23.43901 -21.98838 -20.91806 -20.18820 -19.03256 -18.76034 -18.60352 -17.51317 -17.38988 -16.99692 -16.87304 -16.79465 -16.38071 -15.66348 -15.56279 -15.23988 -15.07397 -15.03816 -14.60884 -14.38007 -13.97978 -13.91791 -13.83299 -13.80412 -13.44298 -13.38336 -13.26668 -13.05166 -12.95963 -12.79317 -12.71716 -12.70360 -12.38901 -12.28769 -11.98278 -11.82914 -11.55836 -11.48053 -11.37153 -11.16619 -10.80717 -10.63656 -10.51757 -9.73645 -9.54504 -8.93334 -7.76315 -5.24358 -0.47414 0.05870 1.45563 1.46061 1.48465 1.56332 1.81394 2.22930 2.47573 2.59793 3.17272 3.30055 3.37160 3.38827 3.50771 3.56058 3.61688 3.86589 3.92063 3.98395 4.10400 4.21183 4.27686 4.34680 4.38268 4.39577 4.44955 4.56954 4.59660 4.62828 4.73387 4.75499 4.75614 4.77648 4.85759 4.93328 4.95307 5.03573 5.06792 5.20909 5.21745 5.29106 5.33891 5.45447 5.53357 5.60578 5.81854 6.11769 6.34944 6.38159 6.68966 6.93160 7.09700 7.75881 8.43498 9.22309 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.003589 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.359348 B = 7799.721253 C = 9127.548518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.070 3.930 4 C 0.045 3.955 5 N -0.464 5.464 6 C 0.101 3.899 7 C -0.159 4.159 8 C 0.580 3.420 9 O -0.564 6.564 10 N -0.604 5.604 11 C 0.110 3.890 12 C -0.106 4.106 13 H 0.109 0.891 14 C 0.150 3.850 15 N -0.617 5.617 16 C -0.235 4.235 17 H 0.079 0.921 18 C -0.063 4.063 19 N -0.945 5.945 20 Si 0.978 3.022 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.295 1.295 24 C 0.140 3.860 25 C -0.075 4.075 26 C -0.114 4.114 27 C 0.123 3.877 28 C -0.043 4.043 29 C -0.097 4.097 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.197 0.803 34 H 0.183 0.817 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.092 0.908 38 H -0.030 1.030 39 H 0.248 0.752 40 H -0.003 1.003 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.050 0.950 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 1.071 -15.942 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.022 3.978 4 C -0.113 4.113 5 N -0.173 5.173 6 C -0.057 4.057 7 C -0.165 4.165 8 C 0.369 3.631 9 O -0.444 6.444 10 N -0.335 5.335 11 C -0.012 4.012 12 C -0.126 4.126 13 H 0.127 0.873 14 C 0.025 3.975 15 N -0.340 5.340 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.595 5.595 20 Si 0.807 3.193 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.223 1.223 24 C 0.015 3.985 25 C -0.077 4.077 26 C -0.172 4.172 27 C 0.000 4.000 28 C -0.052 4.052 29 C -0.154 4.154 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.214 0.786 34 H 0.200 0.800 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.110 0.890 38 H -0.013 1.013 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.103 0.897 48 H 0.069 0.931 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.201 1.087 -16.079 18.557 hybrid contribution 0.530 -1.409 1.328 2.007 sum -8.672 -0.322 -14.751 17.114 Atomic orbital electron populations 1.23524 0.75471 1.06376 1.02920 1.86087 1.24093 1.24782 1.88264 1.19709 0.91586 0.87170 0.99352 1.23597 1.02179 0.86235 0.99283 1.67626 1.11577 1.26598 1.11532 1.23214 0.88584 0.98519 0.95412 1.20635 0.93863 0.94788 1.07168 1.17765 0.87116 0.79302 0.78883 1.90740 1.65019 1.42887 1.45791 1.48385 1.09912 1.30068 1.45137 1.22485 0.95489 0.92493 0.90749 1.23040 0.93736 1.01057 0.94807 0.87330 1.21740 0.86376 0.93617 0.95782 1.44804 1.11550 1.75721 1.01968 1.19475 0.97745 1.35835 0.83354 0.90364 1.25551 0.96176 1.02283 1.01562 1.69868 1.06925 1.53122 1.29592 0.85008 0.77580 0.77032 0.79707 1.19350 1.21335 1.22271 1.21574 0.95321 0.94749 0.86899 1.22097 0.96096 0.96355 0.93182 1.21581 0.98073 0.95427 1.02091 1.22177 0.80607 1.00314 0.96862 1.19918 0.92201 0.95538 0.97572 1.20576 0.97825 0.93762 1.03197 0.90577 0.91287 0.85805 0.78642 0.80012 0.86942 0.91456 0.89019 1.01259 0.94238 0.98505 0.93457 0.89705 0.93393 0.91229 0.91746 0.87922 0.89736 0.93083 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.32 -6.77 9.58 -92.63 -0.89 -7.66 16 3 C 0.07 1.74 6.68 22.56 0.15 1.89 16 4 C 0.04 0.97 10.21 84.83 0.87 1.84 16 5 N -0.46 -11.71 10.34 -194.40 -2.01 -13.72 16 6 C 0.10 2.63 9.21 85.03 0.78 3.42 16 7 C -0.16 -4.88 5.42 -20.01 -0.11 -4.99 16 8 C 0.58 19.79 7.02 86.79 0.61 20.40 16 9 O -0.56 -22.10 15.25 -3.87 -0.06 -22.16 16 10 N -0.60 -18.72 3.32 -817.91 -2.71 -21.43 16 11 C 0.11 3.11 4.62 86.62 0.40 3.51 16 12 C -0.11 -3.60 3.68 -9.53 -0.04 -3.64 16 13 H 0.11 3.32 7.88 -2.39 -0.02 3.30 16 14 C 0.15 7.25 5.71 86.51 0.49 7.75 16 15 N -0.62 -31.91 3.39 -695.32 -2.36 -34.27 16 16 C -0.24 -13.27 10.34 84.03 0.87 -12.40 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 19 N -0.95 -55.64 10.08 21.65 0.22 -55.43 16 20 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 C 0.14 5.92 6.38 86.50 0.55 6.47 16 25 C -0.08 -2.38 1.09 -51.02 -0.06 -2.44 16 26 C -0.11 -2.82 8.49 71.98 0.61 -2.21 16 27 C 0.12 3.53 5.97 86.51 0.52 4.05 16 28 C -0.04 -1.30 5.96 -19.30 -0.11 -1.42 16 29 C -0.10 -2.93 8.63 71.24 0.61 -2.31 16 30 H 0.08 0.56 7.67 -2.38 -0.02 0.54 16 31 H 0.07 0.63 7.68 -2.39 -0.02 0.61 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.20 2.69 6.30 -2.91 -0.02 2.68 16 34 H 0.18 3.87 6.01 -2.91 -0.02 3.85 16 35 H 0.11 2.20 7.42 -2.39 -0.02 2.18 16 36 H 0.07 2.12 6.19 -2.39 -0.01 2.10 16 37 H 0.09 5.03 5.45 -2.39 -0.01 5.02 16 38 H -0.03 -1.64 7.42 -2.39 -0.02 -1.66 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.00 -0.13 7.39 -2.39 -0.02 -0.15 16 41 H 0.05 1.92 7.85 -2.39 -0.02 1.90 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 2.09 7.24 -2.39 -0.02 2.07 16 46 H 0.10 2.27 7.87 -2.38 -0.02 2.25 16 47 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.05 1.79 6.87 -2.39 -0.02 1.77 16 49 H 0.08 2.22 7.47 -2.39 -0.02 2.20 16 Total: -1.00 -74.81 381.12 2.92 -71.89 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.97 Total: 17.01 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.73 Total: 18.04 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.86 Total: -124.85 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.95 Total: -29.82 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.81 2.92 -71.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091783369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.423 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds