Wall clock time and date at job start Wed Apr 1 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38399 * 120.85808 * 2 1 4 4 C 1.38317 * 119.30134 * 179.97438 * 3 2 1 5 5 N 1.31954 * 121.08342 * 359.97438 * 4 3 2 6 6 C 1.31668 * 121.88042 * 359.76812 * 5 4 3 7 7 C 1.39562 * 120.56642 * 0.49518 * 6 5 4 8 8 C 1.47836 * 120.56027 * 179.77266 * 7 6 5 9 9 O 1.21552 * 119.99931 * 234.74259 * 8 7 6 10 10 N 1.34777 * 120.00174 * 55.02709 * 8 7 6 11 11 C 1.46923 * 120.62503 * 355.40223 * 10 8 7 12 12 C 1.53626 * 108.54454 * 126.37416 * 11 10 8 13 13 C 1.53045 * 109.24114 * 54.84993 * 12 11 10 14 14 O 1.42900 * 109.45603 * 178.49221 * 13 12 11 15 15 C 1.42895 * 114.00451 * 270.06706 * 14 13 12 16 16 C 1.53947 * 113.74429 * 248.74684 * 15 14 13 17 17 N 1.47813 * 86.03682 * 222.08027 * 16 15 14 18 18 C 1.36932 * 134.45988 * 204.63876 * 17 16 15 19 19 H 1.08000 * 120.00188 * 179.86771 * 18 17 16 20 20 C 1.38817 * 119.99665 * 359.87437 * 18 17 16 21 21 N 1.31615 * 120.00090 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99629 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46929 * 89.99976 * 22 20 18 24 24 H 1.48504 * 109.47037 * 209.99412 * 22 20 18 25 25 H 1.48491 * 109.47558 * 329.99930 * 22 20 18 26 26 C 1.47586 * 91.05013 * 24.54657 * 17 16 15 27 27 C 1.53037 * 109.53603 * 298.51513 * 13 12 11 28 28 C 1.46918 * 120.63226 * 175.68246 * 10 8 7 29 29 H 1.08999 * 109.46847 * 274.46028 * 1 2 3 30 30 H 1.09003 * 109.46852 * 34.45952 * 1 2 3 31 31 H 1.08998 * 109.46827 * 154.45461 * 1 2 3 32 32 H 1.07994 * 120.34703 * 359.95821 * 3 2 1 33 33 H 1.07998 * 119.45230 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.71887 * 180.26371 * 6 5 4 35 35 H 1.09004 * 109.58509 * 246.19829 * 11 10 8 36 36 H 1.09000 * 109.59103 * 6.62826 * 11 10 8 37 37 H 1.09005 * 109.62873 * 294.86133 * 12 11 10 38 38 H 1.08999 * 109.43221 * 174.72097 * 12 11 10 39 39 H 1.09001 * 109.44754 * 58.53026 * 13 12 11 40 40 H 1.09002 * 112.94280 * 20.33310 * 15 14 13 41 41 H 1.09001 * 113.76824 * 336.34279 * 16 15 14 42 42 H 1.08993 * 113.76814 * 107.74227 * 16 15 14 43 43 H 0.97001 * 120.00092 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.77275 * 221.14671 * 26 17 16 45 45 H 1.09007 * 113.76800 * 89.75443 * 26 17 16 46 46 H 1.09005 * 109.49931 * 301.41204 * 27 13 12 47 47 H 1.09010 * 109.52152 * 181.33426 * 27 13 12 48 48 H 1.09005 * 109.59128 * 353.37031 * 28 10 8 49 49 H 1.09004 * 109.58899 * 113.65412 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5996 1.1505 0.0005 5 7 4.2499 0.0023 0.0016 6 6 3.6197 -1.1538 0.0066 7 6 2.2250 -1.2019 0.0008 8 6 1.5176 -2.5000 0.0014 9 8 0.6969 -2.7454 -0.8610 10 7 1.7785 -3.4092 0.9615 11 6 2.8337 -3.1669 1.9548 12 6 2.2301 -3.3289 3.3582 13 6 1.5687 -4.7047 3.4671 14 8 1.0362 -4.8742 4.7823 15 6 1.9539 -5.4557 5.7105 16 6 1.5698 -6.8794 6.1525 17 7 1.9609 -6.4523 7.5125 18 6 2.3901 -7.1056 8.6367 19 1 2.6205 -6.5464 9.5315 20 6 2.5294 -8.4868 8.6262 21 7 2.2483 -9.1682 7.5358 22 14 3.1157 -9.3780 10.1596 23 1 1.9448 -9.7511 10.9934 24 1 3.8547 -10.6048 9.7670 25 1 4.0133 -8.4868 10.9374 26 6 1.7053 -5.0393 7.1715 27 6 0.4379 -4.8115 2.4414 28 6 1.0173 -4.6639 1.0311 29 1 -0.3633 0.0799 1.0246 30 1 -0.3633 0.8474 -0.5815 31 1 -0.3633 -0.9272 -0.4432 32 1 1.6967 2.1345 -0.0007 33 1 4.1559 2.0761 0.0001 34 1 4.1871 -2.0727 0.0116 35 1 3.6393 -3.8878 1.8152 36 1 3.2214 -2.1551 1.8368 37 1 1.4844 -2.5522 3.5280 38 1 3.0200 -3.2449 4.1046 39 1 2.3097 -5.4801 3.2726 40 1 2.9935 -5.3590 5.3974 41 1 0.5072 -7.0997 6.0498 42 1 2.2090 -7.6568 5.7341 43 1 2.3452 -10.1334 7.5286 44 1 2.4525 -4.3502 7.5652 45 1 0.6826 -4.7177 7.3687 46 1 -0.2910 -4.0208 2.6199 47 1 -0.0485 -5.7826 2.5352 48 1 0.2061 -4.6401 0.3034 49 1 1.6773 -5.5041 0.8152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093521193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:35 Heat of formation + Delta-G solvation = 17.344601 kcal Electronic energy + Delta-G solvation = -30200.979696 eV Core-core repulsion = 26130.196513 eV Total energy + Delta-G solvation = -4070.783183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.32557 -39.77153 -38.71159 -37.41583 -35.54254 -34.28689 -32.82724 -32.06536 -31.31489 -30.94168 -28.37926 -27.47971 -25.71804 -24.80279 -24.10867 -23.76041 -22.89545 -22.47701 -21.15620 -19.72140 -19.25450 -18.01838 -17.05295 -16.95879 -16.78684 -16.54154 -16.28849 -15.37232 -15.03783 -14.93287 -14.65375 -14.52963 -14.39277 -14.12010 -13.80604 -13.66029 -13.52602 -13.28906 -13.13594 -12.90330 -12.75466 -12.54544 -12.22345 -12.05241 -11.94291 -11.76119 -11.46359 -11.23099 -11.15603 -10.91232 -10.71275 -10.56919 -10.48993 -10.26677 -10.01273 -9.93692 -9.80257 -9.57997 -9.50377 -9.00849 -8.82141 -8.75716 -6.92400 -5.79958 -3.12942 0.37418 0.74316 2.25789 2.60741 3.29104 3.37409 3.41832 3.44203 3.85409 3.92693 4.08987 4.22232 4.27645 4.45728 4.51057 4.59793 4.71769 4.80701 4.94448 5.03872 5.05247 5.06530 5.17436 5.19246 5.21020 5.28279 5.35837 5.37783 5.40438 5.48715 5.53024 5.62099 5.66332 5.68773 5.74498 5.80913 5.88033 6.00362 6.14058 6.14774 6.25911 6.38364 6.60172 6.62768 6.99154 7.08291 7.21047 7.43995 7.50192 7.75325 7.84234 7.94965 9.01182 9.67114 10.55765 11.37296 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.002063 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.816314 B =13567.310793 C =14045.994379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.008 3.992 3 C -0.178 4.178 4 C 0.118 3.882 5 N -0.488 5.488 6 C 0.134 3.866 7 C -0.182 4.182 8 C 0.570 3.430 9 O -0.532 6.532 10 N -0.602 5.602 11 C 0.101 3.899 12 C -0.155 4.155 13 C 0.091 3.909 14 O -0.372 6.372 15 C 0.034 3.966 16 C 0.149 3.851 17 N -0.609 5.609 18 C -0.222 4.222 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.121 3.879 27 C -0.130 4.130 28 C 0.114 3.886 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 19.596 -18.077 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 C -0.198 4.198 4 C -0.038 4.038 5 N -0.197 5.197 6 C -0.024 4.024 7 C -0.187 4.187 8 C 0.357 3.643 9 O -0.409 6.409 10 N -0.335 5.335 11 C -0.022 4.022 12 C -0.194 4.194 13 C 0.033 3.967 14 O -0.290 6.290 15 C -0.024 4.024 16 C 0.024 3.976 17 N -0.337 5.337 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.005 4.005 27 C -0.169 4.169 28 C -0.007 4.007 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.602 19.237 -18.298 26.556 hybrid contribution -0.354 -0.582 0.963 1.180 sum 0.248 18.654 -17.335 25.467 Atomic orbital electron populations 1.21089 0.89565 1.05212 1.03355 1.20352 0.97194 0.91344 0.91168 1.22043 0.95607 0.98633 1.03497 1.22965 0.91746 0.96465 0.92639 1.67730 1.40678 0.98237 1.13042 1.22989 0.90027 0.96804 0.92611 1.20819 0.95633 0.94222 1.08016 1.18080 0.81891 0.83054 0.81279 1.90770 1.34794 1.78544 1.36796 1.48124 1.36700 1.19263 1.29376 1.22097 0.89703 1.02681 0.87711 1.22541 1.01469 0.99533 0.95847 1.21959 0.95180 0.95153 0.84453 1.87960 1.40110 1.82446 1.18510 1.25034 0.92247 0.96797 0.88344 1.22746 0.98000 0.92615 0.84278 1.45695 1.76314 1.01074 1.10646 1.18990 1.36983 0.89545 0.89400 0.90080 1.24814 1.01881 0.96054 0.97755 1.69823 1.53969 1.06430 1.26557 0.86089 0.78249 0.79271 0.81972 1.21541 1.21577 1.20558 1.22725 0.98316 0.88991 0.90461 1.21982 0.98320 1.04048 0.92508 1.21691 0.96628 0.84671 0.97743 0.90110 0.90438 0.89007 0.84025 0.82170 0.82145 0.90351 0.89360 0.90760 0.90090 0.91883 0.90202 0.94825 0.90935 0.93576 0.93654 0.94054 0.90821 0.89395 0.88362 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.75 36.01 0.35 -0.70 16 2 C 0.01 0.07 5.95 -103.90 -0.62 -0.55 16 3 C -0.18 -1.21 9.82 -39.49 -0.39 -1.59 16 4 C 0.12 0.85 11.17 -17.47 -0.20 0.65 16 5 N -0.49 -4.54 10.35 -12.91 -0.13 -4.67 16 6 C 0.13 1.20 8.63 -17.13 -0.15 1.05 16 7 C -0.18 -1.77 4.88 -104.82 -0.51 -2.28 16 8 C 0.57 6.38 6.61 -12.33 -0.08 6.30 16 9 O -0.53 -7.43 14.68 5.32 0.08 -7.35 16 10 N -0.60 -5.98 2.97 -173.62 -0.51 -6.50 16 11 C 0.10 0.87 5.61 -3.49 -0.02 0.85 16 12 C -0.16 -1.63 5.71 -26.38 -0.15 -1.78 16 13 C 0.09 1.15 2.45 -26.69 -0.07 1.08 16 14 O -0.37 -6.22 10.01 -35.23 -0.35 -6.58 16 15 C 0.03 0.65 4.29 -25.81 -0.11 0.54 16 16 C 0.15 3.56 7.36 -2.84 -0.02 3.54 16 17 N -0.61 -15.87 3.70 -177.96 -0.66 -16.53 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.32 11.39 55.49 0.63 -26.69 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.12 2.55 8.77 -2.97 -0.03 2.52 16 27 C -0.13 -1.45 5.73 -26.62 -0.15 -1.60 16 28 C 0.11 1.13 6.42 -3.72 -0.02 1.11 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.09 0.92 5.76 -51.93 -0.30 0.62 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.16 1.17 7.42 -52.49 -0.39 0.78 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.70 4.75 -51.93 -0.25 0.46 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 40 H 0.08 1.42 7.80 -51.93 -0.41 1.01 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 48 H 0.10 1.02 7.03 -51.93 -0.36 0.66 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -34.01 392.79 -9.99 -44.01 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.52 Total: -1.02 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.42 Total: 2.37 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.68 Total: -54.39 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.27 Total: -13.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.01 -9.99 -44.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093521193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.350 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds