Wall clock time and date at job start Wed Apr 1 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38399 * 120.85808 * 2 1 4 4 C 1.38317 * 119.30134 * 179.97438 * 3 2 1 5 5 N 1.31954 * 121.08342 * 359.97438 * 4 3 2 6 6 C 1.31668 * 121.88042 * 359.76812 * 5 4 3 7 7 C 1.39562 * 120.56642 * 0.49518 * 6 5 4 8 8 C 1.47836 * 120.56027 * 179.77266 * 7 6 5 9 9 O 1.21552 * 119.99931 * 234.74259 * 8 7 6 10 10 N 1.34777 * 120.00174 * 55.02709 * 8 7 6 11 11 C 1.46923 * 120.62503 * 355.40223 * 10 8 7 12 12 C 1.53626 * 108.54454 * 126.37416 * 11 10 8 13 13 C 1.53045 * 109.24114 * 54.84993 * 12 11 10 14 14 O 1.42900 * 109.45603 * 178.49221 * 13 12 11 15 15 C 1.42895 * 114.00451 * 270.06706 * 14 13 12 16 16 C 1.53947 * 113.74429 * 248.74684 * 15 14 13 17 17 N 1.47813 * 86.03682 * 222.08027 * 16 15 14 18 18 C 1.36932 * 134.45988 * 204.63876 * 17 16 15 19 19 H 1.08000 * 120.00188 * 179.86771 * 18 17 16 20 20 C 1.38817 * 119.99665 * 359.87437 * 18 17 16 21 21 N 1.31615 * 120.00090 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99629 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46929 * 89.99976 * 22 20 18 24 24 H 1.48504 * 109.47037 * 209.99412 * 22 20 18 25 25 H 1.48491 * 109.47558 * 329.99930 * 22 20 18 26 26 C 1.47586 * 91.05013 * 24.54657 * 17 16 15 27 27 C 1.53037 * 109.53603 * 298.51513 * 13 12 11 28 28 C 1.46918 * 120.63226 * 175.68246 * 10 8 7 29 29 H 1.08999 * 109.46847 * 274.46028 * 1 2 3 30 30 H 1.09003 * 109.46852 * 34.45952 * 1 2 3 31 31 H 1.08998 * 109.46827 * 154.45461 * 1 2 3 32 32 H 1.07994 * 120.34703 * 359.95821 * 3 2 1 33 33 H 1.07998 * 119.45230 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.71887 * 180.26371 * 6 5 4 35 35 H 1.09004 * 109.58509 * 246.19829 * 11 10 8 36 36 H 1.09000 * 109.59103 * 6.62826 * 11 10 8 37 37 H 1.09005 * 109.62873 * 294.86133 * 12 11 10 38 38 H 1.08999 * 109.43221 * 174.72097 * 12 11 10 39 39 H 1.09001 * 109.44754 * 58.53026 * 13 12 11 40 40 H 1.09002 * 112.94280 * 20.33310 * 15 14 13 41 41 H 1.09001 * 113.76824 * 336.34279 * 16 15 14 42 42 H 1.08993 * 113.76814 * 107.74227 * 16 15 14 43 43 H 0.97001 * 120.00092 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.77275 * 221.14671 * 26 17 16 45 45 H 1.09007 * 113.76800 * 89.75443 * 26 17 16 46 46 H 1.09005 * 109.49931 * 301.41204 * 27 13 12 47 47 H 1.09010 * 109.52152 * 181.33426 * 27 13 12 48 48 H 1.09005 * 109.59128 * 353.37031 * 28 10 8 49 49 H 1.09004 * 109.58899 * 113.65412 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5996 1.1505 0.0005 5 7 4.2499 0.0023 0.0016 6 6 3.6197 -1.1538 0.0066 7 6 2.2250 -1.2019 0.0008 8 6 1.5176 -2.5000 0.0014 9 8 0.6969 -2.7454 -0.8610 10 7 1.7785 -3.4092 0.9615 11 6 2.8337 -3.1669 1.9548 12 6 2.2301 -3.3289 3.3582 13 6 1.5687 -4.7047 3.4671 14 8 1.0362 -4.8742 4.7823 15 6 1.9539 -5.4557 5.7105 16 6 1.5698 -6.8794 6.1525 17 7 1.9609 -6.4523 7.5125 18 6 2.3901 -7.1056 8.6367 19 1 2.6205 -6.5464 9.5315 20 6 2.5294 -8.4868 8.6262 21 7 2.2483 -9.1682 7.5358 22 14 3.1157 -9.3780 10.1596 23 1 1.9448 -9.7511 10.9934 24 1 3.8547 -10.6048 9.7670 25 1 4.0133 -8.4868 10.9374 26 6 1.7053 -5.0393 7.1715 27 6 0.4379 -4.8115 2.4414 28 6 1.0173 -4.6639 1.0311 29 1 -0.3633 0.0799 1.0246 30 1 -0.3633 0.8474 -0.5815 31 1 -0.3633 -0.9272 -0.4432 32 1 1.6967 2.1345 -0.0007 33 1 4.1559 2.0761 0.0001 34 1 4.1871 -2.0727 0.0116 35 1 3.6393 -3.8878 1.8152 36 1 3.2214 -2.1551 1.8368 37 1 1.4844 -2.5522 3.5280 38 1 3.0200 -3.2449 4.1046 39 1 2.3097 -5.4801 3.2726 40 1 2.9935 -5.3590 5.3974 41 1 0.5072 -7.0997 6.0498 42 1 2.2090 -7.6568 5.7341 43 1 2.3452 -10.1334 7.5286 44 1 2.4525 -4.3502 7.5652 45 1 0.6826 -4.7177 7.3687 46 1 -0.2910 -4.0208 2.6199 47 1 -0.0485 -5.7826 2.5352 48 1 0.2061 -4.6401 0.3034 49 1 1.6773 -5.5041 0.8152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093521193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:34 Heat of formation + Delta-G solvation = -4.100803 kcal Electronic energy + Delta-G solvation = -30201.909638 eV Core-core repulsion = 26130.196513 eV Total energy + Delta-G solvation = -4071.713126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.04546 -40.63928 -40.02641 -38.64175 -36.84667 -34.90614 -34.21129 -33.48614 -32.29661 -31.69067 -29.46164 -28.95913 -26.66872 -26.52050 -25.09848 -24.74958 -24.26900 -23.19666 -22.04247 -21.22347 -20.31796 -18.86739 -18.75745 -17.91762 -17.72518 -17.34047 -17.24275 -16.98235 -16.15575 -15.98256 -15.72413 -15.58414 -15.37416 -15.17132 -14.88043 -14.72094 -14.64446 -14.26574 -13.91974 -13.73022 -13.70741 -13.60593 -13.36963 -13.24338 -13.16566 -12.87882 -12.84874 -12.82187 -12.73175 -12.29703 -12.24754 -11.98373 -11.79352 -11.47735 -11.45269 -11.26979 -10.88225 -10.55688 -10.45930 -10.28790 -10.08713 -9.83261 -8.98185 -7.93256 -5.28427 -0.24010 0.15260 1.44383 1.45654 1.48080 1.56834 1.83423 2.41371 2.67381 2.73389 3.21756 3.26502 3.44634 3.49171 3.61703 3.66852 3.75346 3.81938 3.87622 3.97640 4.05525 4.12846 4.15659 4.27014 4.34344 4.40006 4.46730 4.52274 4.58862 4.63279 4.68881 4.71918 4.76671 4.81366 4.83279 4.85866 4.92296 4.95500 5.10128 5.13150 5.18726 5.21532 5.25607 5.35082 5.41871 5.48366 5.60207 5.87781 6.18959 6.45279 6.84669 6.88197 6.93919 7.56683 8.51540 9.23889 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.002063 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.816314 B =13567.310793 C =14045.994379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.170 4.170 4 C 0.116 3.884 5 N -0.509 5.509 6 C 0.130 3.870 7 C -0.199 4.199 8 C 0.570 3.430 9 O -0.567 6.567 10 N -0.600 5.600 11 C 0.105 3.895 12 C -0.147 4.147 13 C 0.083 3.917 14 O -0.382 6.382 15 C 0.072 3.928 16 C 0.144 3.856 17 N -0.639 5.639 18 C -0.236 4.236 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.264 1.264 26 C 0.120 3.880 27 C -0.123 4.123 28 C 0.119 3.881 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.172 0.828 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.012 0.988 42 H 0.046 0.954 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 21.904 -18.027 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.015 4.015 3 C -0.190 4.190 4 C -0.039 4.039 5 N -0.218 5.218 6 C -0.028 4.028 7 C -0.204 4.204 8 C 0.359 3.641 9 O -0.447 6.447 10 N -0.332 5.332 11 C -0.017 4.017 12 C -0.186 4.186 13 C 0.025 3.975 14 O -0.300 6.300 15 C 0.014 3.986 16 C 0.018 3.982 17 N -0.368 5.368 18 C -0.364 4.364 19 H 0.106 0.894 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.811 3.189 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.189 1.189 26 C -0.005 4.005 27 C -0.161 4.161 28 C -0.003 4.003 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.190 0.810 33 H 0.208 0.792 34 H 0.189 0.811 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.943 21.586 -18.242 28.328 hybrid contribution -0.835 -1.196 0.890 1.708 sum 1.109 20.389 -17.353 26.797 Atomic orbital electron populations 1.21055 0.89328 1.04682 1.03798 1.20612 0.97642 0.91820 0.91420 1.22353 0.95555 0.99088 1.01982 1.23528 0.92293 0.96913 0.91208 1.67780 1.41279 0.98868 1.13854 1.23128 0.89710 0.97395 0.92517 1.20788 0.96072 0.93769 1.09805 1.18345 0.81374 0.83565 0.80857 1.90748 1.36450 1.79255 1.38247 1.48183 1.36729 1.18945 1.29320 1.22179 0.89462 1.03983 0.86044 1.22449 1.01316 0.97582 0.97244 1.22251 0.95881 0.96778 0.82571 1.87940 1.40188 1.81846 1.20053 1.24385 0.93121 0.92852 0.88284 1.22679 0.96105 0.95093 0.84349 1.46083 1.76430 1.03492 1.10749 1.19424 1.36345 0.90182 0.90441 0.89437 1.25711 1.02658 0.96937 1.00832 1.70018 1.55468 1.06217 1.28582 0.85013 0.77727 0.77830 0.78360 1.21473 1.21864 1.18889 1.22863 0.98895 0.87039 0.91668 1.21905 0.97774 1.03577 0.92875 1.21636 0.96847 0.85326 0.96504 0.89554 0.88440 0.91601 0.81016 0.79223 0.81136 0.88474 0.88299 0.91446 0.89427 0.91363 0.88283 0.97031 0.93572 0.94136 0.91383 0.93961 0.91603 0.89773 0.89066 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.75 71.24 0.69 -1.24 16 2 C -0.01 -0.10 5.95 -19.40 -0.12 -0.22 16 3 C -0.17 -1.84 9.82 22.33 0.22 -1.62 16 4 C 0.12 1.34 11.17 84.69 0.95 2.29 16 5 N -0.51 -8.42 10.35 -194.75 -2.01 -10.44 16 6 C 0.13 2.15 8.63 85.04 0.73 2.88 16 7 C -0.20 -3.69 4.88 -19.99 -0.10 -3.79 16 8 C 0.57 12.60 6.61 86.78 0.57 13.17 16 9 O -0.57 -16.19 14.68 -3.88 -0.06 -16.24 16 10 N -0.60 -11.35 2.97 -821.50 -2.44 -13.79 16 11 C 0.11 1.60 5.61 86.51 0.49 2.09 16 12 C -0.15 -2.80 5.71 30.82 0.18 -2.63 16 13 C 0.08 1.98 2.45 30.62 0.07 2.06 16 14 O -0.38 -12.41 10.01 -148.98 -1.49 -13.90 16 15 C 0.07 2.68 4.29 31.25 0.13 2.81 16 16 C 0.14 7.01 7.36 86.44 0.64 7.64 16 17 N -0.64 -33.43 3.70 -720.77 -2.67 -36.10 16 18 C -0.24 -13.34 10.70 84.04 0.90 -12.44 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.95 -57.96 11.39 21.65 0.25 -57.71 16 22 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.12 4.92 8.77 86.48 0.76 5.67 16 27 C -0.12 -2.68 5.73 30.67 0.18 -2.51 16 28 C 0.12 2.28 6.42 86.36 0.55 2.83 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.07 1.34 5.76 -2.39 -0.01 1.32 16 32 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.17 2.24 7.42 -2.91 -0.02 2.22 16 35 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.10 1.37 4.75 -2.39 -0.01 1.36 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.60 7.74 -2.39 -0.02 1.58 16 40 H 0.10 3.31 7.80 -2.39 -0.02 3.29 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.05 2.47 7.17 -2.39 -0.02 2.45 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 48 H 0.09 1.92 7.03 -2.38 -0.02 1.91 16 49 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -74.92 392.79 1.87 -73.05 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.95 Total: 13.97 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 7.32 Total: 13.56 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -6.87 Total: -118.04 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.55 Total: -30.14 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.92 1.87 -73.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093521193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.953 kcal (2) G-P(sol) polarization free energy of solvation -74.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds