Wall clock time and date at job start Wed Apr 1 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38084 * 119.58612 * 2 1 4 4 C 1.38786 * 119.29450 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.76263 * 179.97438 * 4 3 2 6 6 C 1.38424 * 118.48238 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.44702 * 179.97438 * 6 4 3 8 8 C 1.50708 * 109.46742 * 89.99899 * 7 6 4 9 9 O 1.21276 * 120.00029 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99724 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99927 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.55698 * 32.09380 * 11 10 8 13 13 C 1.54850 * 110.62152 * 269.02251 * 11 10 8 14 14 C 1.55843 * 103.44635 * 241.50772 * 13 11 10 15 15 H 1.09005 * 116.13069 * 159.14694 * 14 13 11 16 16 C 1.55842 * 105.06471 * 288.17959 * 14 13 11 17 17 C 1.54850 * 103.44887 * 71.82224 * 16 14 13 18 18 C 1.55842 * 110.62896 * 154.99579 * 11 10 8 19 19 H 1.09001 * 115.56003 * 319.67584 * 18 11 10 20 20 N 1.50242 * 101.04890 * 32.94144 * 14 13 11 21 21 C 1.36938 * 130.84118 * 126.01248 * 20 14 13 22 22 H 1.08000 * 119.99950 * 184.77523 * 21 20 14 23 23 C 1.38814 * 119.99676 * 4.78055 * 21 20 14 24 24 N 1.31612 * 120.00193 * 8.96684 * 23 21 20 25 25 Si 1.86803 * 119.99416 * 188.96719 * 23 21 20 26 26 H 1.48501 * 109.47004 * 94.25094 * 25 23 21 27 27 H 1.48502 * 109.46787 * 214.24382 * 25 23 21 28 28 H 1.48492 * 109.47233 * 334.24630 * 25 23 21 29 29 C 1.38882 * 119.11287 * 359.97438 * 6 4 3 30 30 O 1.35672 * 119.68452 * 180.02562 * 29 6 4 31 31 N 1.31941 * 119.58329 * 179.73052 * 2 1 3 32 32 H 1.08993 * 109.47507 * 90.00065 * 1 2 3 33 33 H 1.09005 * 109.47125 * 210.00340 * 1 2 3 34 34 H 1.08995 * 109.46952 * 329.99301 * 1 2 3 35 35 H 1.08002 * 120.35507 * 359.97438 * 3 2 1 36 36 H 1.09004 * 109.46444 * 90.00276 * 5 4 3 37 37 H 1.08992 * 109.47190 * 210.00049 * 5 4 3 38 38 H 1.08998 * 109.46982 * 330.00640 * 5 4 3 39 39 H 1.08997 * 109.47501 * 209.99708 * 7 6 4 40 40 H 1.09001 * 109.47161 * 330.00727 * 7 6 4 41 41 H 0.97007 * 120.00251 * 359.97438 * 10 8 7 42 42 H 1.09001 * 110.62994 * 0.02562 * 13 11 10 43 43 H 1.09000 * 110.62688 * 123.02210 * 13 11 10 44 44 H 1.09008 * 110.62730 * 190.31454 * 16 14 13 45 45 H 1.08997 * 110.62785 * 313.17148 * 16 14 13 46 46 H 1.08996 * 110.62926 * 241.51279 * 17 16 14 47 47 H 1.08997 * 110.62818 * 118.48649 * 17 16 14 48 48 H 0.96998 * 119.99730 * 180.02562 * 24 23 21 49 49 H 0.96701 * 114.00501 * 89.99791 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2008 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4847 0.0000 6 6 4.2305 -0.0263 0.0005 7 6 5.7362 -0.0856 0.0005 8 6 6.2381 -0.1054 1.4214 9 8 5.4506 -0.0748 2.3432 10 7 7.5622 -0.1570 1.6677 11 6 8.0501 -0.1768 3.0490 12 1 7.3419 -0.6923 3.6977 13 6 8.3113 1.2629 3.5558 14 6 9.8378 1.2651 3.8698 15 1 10.3194 2.2424 3.9041 16 6 9.9884 0.3958 5.1544 17 6 9.7272 -1.0439 4.6476 18 6 9.4543 -0.8484 3.1257 19 1 9.5897 -1.7284 2.4968 20 7 10.3490 0.3193 2.8204 21 6 11.3286 0.4739 1.8760 22 1 11.5049 -0.3044 1.1484 23 6 12.0949 1.6312 1.8541 24 7 12.0047 2.4990 2.8395 25 14 13.2543 1.9566 0.4260 26 1 12.5674 2.7969 -0.5876 27 1 14.4619 2.6654 0.9204 28 1 13.6551 0.6663 -0.1901 29 6 3.4803 -1.1951 0.0005 30 8 4.1092 -2.3972 0.0010 31 7 2.1583 -1.1474 0.0054 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 1.6477 2.1356 -0.0004 36 1 4.5409 2.7966 1.0276 37 1 5.3039 2.3366 -0.5134 38 1 3.7791 3.2548 -0.5145 39 1 6.0643 -0.9892 -0.5133 40 1 6.1343 0.7894 -0.5132 41 1 8.1921 -0.1819 0.9304 42 1 8.0775 1.9916 2.7796 43 1 7.7335 1.4631 4.4581 44 1 10.9960 0.4828 5.5610 45 1 9.2482 0.6828 5.9012 46 1 8.8556 -1.4728 5.1419 47 1 10.6052 -1.6709 4.8027 48 1 12.5400 3.3078 2.8239 49 1 4.2913 -2.7455 0.8845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097702085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:32 Heat of formation + Delta-G solvation = -5.498502 kcal Electronic energy + Delta-G solvation = -30985.537287 eV Core-core repulsion = 26913.763553 eV Total energy + Delta-G solvation = -4071.773734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.96495 -39.72327 -38.37648 -37.33224 -34.87965 -33.81114 -32.57531 -32.02892 -30.52024 -29.16609 -28.86071 -27.98245 -27.67968 -25.79603 -24.22991 -22.89556 -21.72297 -20.87079 -19.92708 -19.73395 -18.70374 -18.41184 -17.36306 -17.05050 -16.81582 -16.12827 -15.65712 -15.17477 -14.88002 -14.69622 -14.33708 -14.02102 -13.99085 -13.71020 -13.50244 -13.30985 -13.08246 -13.02682 -12.83225 -12.46283 -12.13335 -12.05462 -11.98669 -11.83426 -11.64956 -11.60199 -11.24270 -11.18751 -10.99150 -10.93903 -10.56316 -10.39392 -10.13088 -9.98633 -9.82185 -9.53495 -9.50729 -9.33815 -9.18240 -8.94566 -8.69125 -8.53851 -6.99629 -5.82081 -3.18423 0.88528 1.11180 2.88761 3.25126 3.32064 3.37657 3.40134 3.58096 3.77770 4.34552 4.36302 4.46564 4.73656 4.74964 5.01590 5.07440 5.12478 5.18093 5.21266 5.29869 5.32167 5.35715 5.47812 5.54989 5.60579 5.61555 5.65556 5.71580 5.83968 5.90574 5.95976 6.01235 6.04986 6.11082 6.19415 6.24762 6.37901 6.42769 6.45232 6.57077 6.70617 6.77332 6.90925 7.07178 7.27029 7.39656 7.42975 7.72901 7.85855 7.93199 8.08391 8.54726 9.00218 9.64642 10.46614 11.28732 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002808 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.114639 B = 9968.554463 C =10578.375276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.147 3.853 3 C -0.184 4.184 4 C -0.011 4.011 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.102 4.102 8 C 0.513 3.487 9 O -0.550 6.550 10 N -0.704 5.704 11 C 0.130 3.870 12 H 0.079 0.921 13 C -0.143 4.143 14 C 0.156 3.844 15 H 0.146 0.854 16 C -0.136 4.136 17 C -0.128 4.128 18 C 0.124 3.876 19 H 0.088 0.912 20 N -0.590 5.590 21 C -0.217 4.217 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.331 3.669 30 O -0.483 6.483 31 N -0.509 5.509 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.404 0.596 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.254 0.746 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 -2.703 -4.310 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.010 3.990 3 C -0.204 4.204 4 C -0.018 4.018 5 C -0.178 4.178 6 C -0.133 4.133 7 C -0.143 4.143 8 C 0.299 3.701 9 O -0.429 6.429 10 N -0.354 5.354 11 C 0.024 3.976 12 H 0.097 0.903 13 C -0.184 4.184 14 C 0.050 3.950 15 H 0.163 0.837 16 C -0.176 4.176 17 C -0.168 4.168 18 C 0.016 3.984 19 H 0.106 0.894 20 N -0.311 5.311 21 C -0.345 4.345 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.563 5.563 25 Si 0.743 3.257 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.152 3.848 30 O -0.290 6.290 31 N -0.229 5.229 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.238 0.762 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -17.638 -3.280 -4.390 18.470 hybrid contribution 1.527 0.744 -0.515 1.775 sum -16.112 -2.536 -4.906 17.032 Atomic orbital electron populations 1.20714 0.88657 1.03539 1.03048 1.20927 0.96620 0.87239 0.94262 1.21763 0.93899 0.99296 1.05414 1.20065 0.93674 0.94927 0.93148 1.20913 0.99969 0.93299 1.03606 1.20114 0.95604 0.92765 1.04804 1.20586 0.91671 1.05882 0.96141 1.20344 0.82779 0.76518 0.90482 1.90674 1.55468 1.50577 1.46181 1.46033 1.06208 1.73171 1.09964 1.22633 0.95986 0.97776 0.81244 0.90274 1.23441 1.00035 0.95378 0.99518 1.23586 0.88845 0.97114 0.85472 0.83679 1.23033 1.00058 0.95601 0.98864 1.22864 0.99649 0.97625 0.96639 1.23176 0.89082 0.91682 0.94472 0.89410 1.46550 1.38537 1.09329 1.36639 1.19002 1.08475 1.02042 1.04965 0.90371 1.24709 0.99658 0.97833 0.98291 1.69588 1.43620 1.12282 1.30855 0.86088 0.80100 0.77867 0.81613 1.21718 1.21809 1.20702 1.18795 0.86551 0.84871 0.94628 1.84678 1.76556 1.33577 1.34177 1.66960 1.09530 1.30703 1.15659 0.90390 0.90450 0.90556 0.84589 0.89827 0.90628 0.90820 0.87322 0.87615 0.76185 0.92397 0.92806 0.92440 0.93468 0.93102 0.92437 0.93562 0.73999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.00 0.37 -0.46 16 2 C 0.15 1.74 6.78 -82.60 -0.56 1.18 16 3 C -0.18 -2.01 9.44 -39.44 -0.37 -2.39 16 4 C -0.01 -0.13 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.23 9.67 36.01 0.35 -0.88 16 6 C -0.13 -1.71 4.40 -104.32 -0.46 -2.17 16 7 C -0.10 -1.25 5.25 -29.03 -0.15 -1.40 16 8 C 0.51 7.78 7.82 -10.98 -0.09 7.69 16 9 O -0.55 -10.08 15.68 5.56 0.09 -9.99 16 10 N -0.70 -11.04 5.07 -51.40 -0.26 -11.30 16 11 C 0.13 2.28 2.80 -65.44 -0.18 2.10 16 12 H 0.08 1.42 7.23 -51.93 -0.38 1.04 16 13 C -0.14 -2.77 6.23 -24.24 -0.15 -2.93 16 14 C 0.16 3.44 4.69 -62.80 -0.29 3.14 16 15 H 0.15 3.69 5.69 -51.93 -0.30 3.39 16 16 C -0.14 -2.65 6.44 -24.24 -0.16 -2.81 16 17 C -0.13 -2.27 6.44 -24.24 -0.16 -2.43 16 18 C 0.12 2.32 5.06 -62.80 -0.32 2.01 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 20 N -0.59 -13.41 2.98 -145.81 -0.44 -13.84 16 21 C -0.22 -5.48 10.56 -15.06 -0.16 -5.64 16 22 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 23 C -0.01 -0.23 5.47 -17.43 -0.10 -0.32 16 24 N -0.92 -25.12 10.61 55.49 0.59 -24.53 16 25 Si 0.91 20.84 29.56 -169.99 -5.03 15.82 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.33 4.67 7.72 -17.12 -0.13 4.54 16 30 O -0.48 -6.17 12.62 -18.72 -0.24 -6.41 16 31 N -0.51 -7.25 10.30 -9.55 -0.10 -7.35 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.73 6.08 -51.93 -0.32 0.41 16 38 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.11 1.19 7.55 -51.93 -0.39 0.80 16 40 H 0.11 1.12 6.07 -51.93 -0.32 0.81 16 41 H 0.40 6.09 8.66 -40.82 -0.35 5.74 16 42 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 43 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 44 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 45 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 46 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.40 3.91 9.06 45.56 0.41 4.33 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -31.64 394.04 -9.23 -40.87 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.61 Total: 12.31 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.18 Total: -1.51 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.21 Total: -57.03 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.15 Total: -16.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.64 -9.23 -40.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097702085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.375 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds