Wall clock time and date at job start Wed Apr 1 2020 03:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38084 * 119.58612 * 2 1 4 4 C 1.38786 * 119.29450 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.76263 * 179.97438 * 4 3 2 6 6 C 1.38424 * 118.48238 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.44702 * 179.97438 * 6 4 3 8 8 C 1.50708 * 109.46742 * 89.99899 * 7 6 4 9 9 O 1.21276 * 120.00029 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99724 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99927 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.55698 * 32.09380 * 11 10 8 13 13 C 1.54850 * 110.62152 * 269.02251 * 11 10 8 14 14 C 1.55843 * 103.44635 * 241.50772 * 13 11 10 15 15 H 1.09005 * 116.13069 * 159.14694 * 14 13 11 16 16 C 1.55842 * 105.06471 * 288.17959 * 14 13 11 17 17 C 1.54850 * 103.44887 * 71.82224 * 16 14 13 18 18 C 1.55842 * 110.62896 * 154.99579 * 11 10 8 19 19 H 1.09001 * 115.56003 * 319.67584 * 18 11 10 20 20 N 1.50242 * 101.04890 * 32.94144 * 14 13 11 21 21 C 1.36938 * 130.84118 * 126.01248 * 20 14 13 22 22 H 1.08000 * 119.99950 * 184.77523 * 21 20 14 23 23 C 1.38814 * 119.99676 * 4.78055 * 21 20 14 24 24 N 1.31612 * 120.00193 * 8.96684 * 23 21 20 25 25 Si 1.86803 * 119.99416 * 188.96719 * 23 21 20 26 26 H 1.48501 * 109.47004 * 94.25094 * 25 23 21 27 27 H 1.48502 * 109.46787 * 214.24382 * 25 23 21 28 28 H 1.48492 * 109.47233 * 334.24630 * 25 23 21 29 29 C 1.38882 * 119.11287 * 359.97438 * 6 4 3 30 30 O 1.35672 * 119.68452 * 180.02562 * 29 6 4 31 31 N 1.31941 * 119.58329 * 179.73052 * 2 1 3 32 32 H 1.08993 * 109.47507 * 90.00065 * 1 2 3 33 33 H 1.09005 * 109.47125 * 210.00340 * 1 2 3 34 34 H 1.08995 * 109.46952 * 329.99301 * 1 2 3 35 35 H 1.08002 * 120.35507 * 359.97438 * 3 2 1 36 36 H 1.09004 * 109.46444 * 90.00276 * 5 4 3 37 37 H 1.08992 * 109.47190 * 210.00049 * 5 4 3 38 38 H 1.08998 * 109.46982 * 330.00640 * 5 4 3 39 39 H 1.08997 * 109.47501 * 209.99708 * 7 6 4 40 40 H 1.09001 * 109.47161 * 330.00727 * 7 6 4 41 41 H 0.97007 * 120.00251 * 359.97438 * 10 8 7 42 42 H 1.09001 * 110.62994 * 0.02562 * 13 11 10 43 43 H 1.09000 * 110.62688 * 123.02210 * 13 11 10 44 44 H 1.09008 * 110.62730 * 190.31454 * 16 14 13 45 45 H 1.08997 * 110.62785 * 313.17148 * 16 14 13 46 46 H 1.08996 * 110.62926 * 241.51279 * 17 16 14 47 47 H 1.08997 * 110.62818 * 118.48649 * 17 16 14 48 48 H 0.96998 * 119.99730 * 180.02562 * 24 23 21 49 49 H 0.96701 * 114.00501 * 89.99791 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2008 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4847 0.0000 6 6 4.2305 -0.0263 0.0005 7 6 5.7362 -0.0856 0.0005 8 6 6.2381 -0.1054 1.4214 9 8 5.4506 -0.0748 2.3432 10 7 7.5622 -0.1570 1.6677 11 6 8.0501 -0.1768 3.0490 12 1 7.3419 -0.6923 3.6977 13 6 8.3113 1.2629 3.5558 14 6 9.8378 1.2651 3.8698 15 1 10.3194 2.2424 3.9041 16 6 9.9884 0.3958 5.1544 17 6 9.7272 -1.0439 4.6476 18 6 9.4543 -0.8484 3.1257 19 1 9.5897 -1.7284 2.4968 20 7 10.3490 0.3193 2.8204 21 6 11.3286 0.4739 1.8760 22 1 11.5049 -0.3044 1.1484 23 6 12.0949 1.6312 1.8541 24 7 12.0047 2.4990 2.8395 25 14 13.2543 1.9566 0.4260 26 1 12.5674 2.7969 -0.5876 27 1 14.4619 2.6654 0.9204 28 1 13.6551 0.6663 -0.1901 29 6 3.4803 -1.1951 0.0005 30 8 4.1092 -2.3972 0.0010 31 7 2.1583 -1.1474 0.0054 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 1.6477 2.1356 -0.0004 36 1 4.5409 2.7966 1.0276 37 1 5.3039 2.3366 -0.5134 38 1 3.7791 3.2548 -0.5145 39 1 6.0643 -0.9892 -0.5133 40 1 6.1343 0.7894 -0.5132 41 1 8.1921 -0.1819 0.9304 42 1 8.0775 1.9916 2.7796 43 1 7.7335 1.4631 4.4581 44 1 10.9960 0.4828 5.5610 45 1 9.2482 0.6828 5.9012 46 1 8.8556 -1.4728 5.1419 47 1 10.6052 -1.6709 4.8027 48 1 12.5400 3.3078 2.8239 49 1 4.2913 -2.7455 0.8845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097702085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:31 Heat of formation + Delta-G solvation = -27.899898 kcal Electronic energy + Delta-G solvation = -30986.508685 eV Core-core repulsion = 26913.763553 eV Total energy + Delta-G solvation = -4072.745132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.92713 -41.12296 -39.74925 -38.24938 -35.79920 -35.23266 -34.38533 -32.91785 -31.46925 -30.96424 -30.34284 -29.27810 -28.62188 -26.78901 -26.03456 -23.86438 -22.97334 -21.92657 -21.51677 -21.06614 -20.26182 -19.34375 -18.81892 -18.29038 -18.00446 -17.38720 -16.75737 -16.63030 -16.19166 -16.00929 -15.64691 -15.39910 -15.12988 -14.93135 -14.44930 -14.42295 -14.14397 -13.87448 -13.83800 -13.70815 -13.64826 -13.18717 -12.97414 -12.91084 -12.81547 -12.78029 -12.74693 -12.64965 -12.48760 -12.43863 -12.09088 -11.93253 -11.89106 -11.70876 -11.26421 -10.99811 -10.81575 -10.73156 -10.43682 -10.36098 -9.92545 -9.60734 -8.84689 -7.76969 -5.13312 -0.01822 0.20474 1.50577 1.51496 1.59322 1.68457 2.25936 2.50445 2.52658 2.84767 3.38022 3.45013 3.47525 3.67761 3.82872 3.88751 3.95635 4.05659 4.10009 4.25122 4.28529 4.37927 4.45749 4.47268 4.50327 4.56531 4.62495 4.66983 4.71541 4.72904 4.80211 4.81897 4.83928 4.91886 5.00359 5.10281 5.11557 5.17375 5.20726 5.22780 5.33497 5.38827 5.54224 5.62071 5.64593 5.74039 5.90823 6.25270 6.51623 6.68379 6.95643 7.06089 7.31685 7.73896 8.60566 9.32570 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002808 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.114639 B = 9968.554463 C =10578.375276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.134 3.866 3 C -0.183 4.183 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.146 4.146 7 C -0.092 4.092 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.703 5.703 11 C 0.143 3.857 12 H 0.085 0.915 13 C -0.132 4.132 14 C 0.143 3.857 15 H 0.108 0.892 16 C -0.131 4.131 17 C -0.120 4.120 18 C 0.126 3.874 19 H 0.103 0.897 20 N -0.608 5.608 21 C -0.214 4.214 22 H 0.086 0.914 23 C -0.066 4.066 24 N -0.946 5.946 25 Si 0.971 3.029 26 H -0.291 1.291 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.311 3.689 30 O -0.489 6.489 31 N -0.537 5.537 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.168 0.832 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.408 0.592 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.055 0.945 48 H 0.245 0.755 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.578 -3.260 -5.204 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.003 4.003 3 C -0.203 4.203 4 C -0.029 4.029 5 C -0.176 4.176 6 C -0.150 4.150 7 C -0.132 4.132 8 C 0.306 3.694 9 O -0.461 6.461 10 N -0.352 5.352 11 C 0.037 3.963 12 H 0.103 0.897 13 C -0.172 4.172 14 C 0.037 3.963 15 H 0.126 0.874 16 C -0.170 4.170 17 C -0.160 4.160 18 C 0.019 3.981 19 H 0.121 0.879 20 N -0.329 5.329 21 C -0.342 4.342 22 H 0.104 0.896 23 C -0.259 4.259 24 N -0.596 5.596 25 Si 0.801 3.199 26 H -0.218 1.218 27 H -0.232 1.232 28 H -0.194 1.194 29 C 0.132 3.868 30 O -0.298 6.298 31 N -0.258 5.258 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.185 0.815 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.243 0.757 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -19.306 -3.876 -5.293 20.391 hybrid contribution 1.950 0.904 -0.204 2.159 sum -17.356 -2.972 -5.497 18.447 Atomic orbital electron populations 1.20819 0.86198 1.04445 1.04213 1.21604 0.98354 0.87012 0.93289 1.22139 0.93688 1.00343 1.04123 1.20417 0.94542 0.95233 0.92716 1.20940 1.00364 0.93107 1.03144 1.20248 0.95932 0.93087 1.05744 1.20538 0.91335 1.07273 0.94073 1.20765 0.82044 0.75161 0.91401 1.90660 1.56089 1.51872 1.47476 1.45975 1.06663 1.73283 1.09299 1.22368 0.95407 0.96138 0.82419 0.89719 1.23290 0.98144 0.96299 0.99511 1.23421 0.90112 0.95984 0.86801 0.87444 1.22941 0.99433 0.96475 0.98160 1.22824 1.00871 0.96338 0.95966 1.23372 0.88499 0.90987 0.95242 0.87932 1.46718 1.38601 1.11132 1.36491 1.19351 1.08092 1.01721 1.05075 0.89625 1.25403 1.01796 0.98275 1.00397 1.69820 1.44727 1.12524 1.32510 0.85159 0.77870 0.77767 0.79111 1.21807 1.23178 1.19446 1.19041 0.86930 0.85370 0.95437 1.84639 1.76541 1.33515 1.35129 1.67004 1.09814 1.32155 1.16822 0.88962 0.91004 0.88176 0.81492 0.91053 0.90383 0.88341 0.86030 0.85958 0.75705 0.94118 0.91762 0.94743 0.91304 0.90145 0.92579 0.94581 0.72965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.17 71.23 0.72 -0.66 16 2 C 0.13 2.97 6.78 42.50 0.29 3.26 16 3 C -0.18 -3.61 9.44 22.36 0.21 -3.40 16 4 C -0.02 -0.48 5.91 -19.69 -0.12 -0.60 16 5 C -0.12 -2.18 9.67 71.24 0.69 -1.49 16 6 C -0.15 -3.71 4.40 -19.67 -0.09 -3.80 16 7 C -0.09 -2.11 5.25 29.10 0.15 -1.95 16 8 C 0.52 15.00 7.82 87.66 0.69 15.68 16 9 O -0.58 -20.60 15.68 -3.02 -0.05 -20.65 16 10 N -0.70 -20.92 5.07 -434.91 -2.21 -23.13 16 11 C 0.14 4.79 2.80 46.60 0.13 4.92 16 12 H 0.08 2.81 7.23 -2.39 -0.02 2.80 16 13 C -0.13 -5.03 6.23 32.21 0.20 -4.83 16 14 C 0.14 6.35 4.69 46.23 0.22 6.56 16 15 H 0.11 5.68 5.69 -2.38 -0.01 5.67 16 16 C -0.13 -5.01 6.44 32.21 0.21 -4.80 16 17 C -0.12 -4.02 6.44 32.21 0.21 -3.82 16 18 C 0.13 4.47 5.06 46.22 0.23 4.71 16 19 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 20 N -0.61 -27.40 2.98 -615.23 -1.84 -29.23 16 21 C -0.21 -10.73 10.56 84.03 0.89 -9.84 16 22 H 0.09 4.07 7.84 -2.91 -0.02 4.05 16 23 C -0.07 -3.48 5.47 84.86 0.46 -3.01 16 24 N -0.95 -53.51 10.61 21.65 0.23 -53.28 16 25 Si 0.97 43.29 29.56 68.60 2.03 45.32 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 29 C 0.31 8.60 7.72 84.78 0.65 9.25 16 30 O -0.49 -12.30 12.62 -89.89 -1.13 -13.43 16 31 N -0.54 -14.97 10.30 -296.98 -3.06 -18.03 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.10 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.08 1.36 6.08 -2.39 -0.01 1.35 16 38 H 0.10 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.12 2.45 7.55 -2.39 -0.02 2.44 16 40 H 0.12 2.36 6.07 -2.39 -0.01 2.35 16 41 H 0.41 11.63 8.66 -92.70 -0.80 10.83 16 42 H 0.04 1.66 7.98 -2.39 -0.02 1.64 16 43 H 0.06 2.28 7.82 -2.39 -0.02 2.26 16 44 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.07 2.30 7.82 -2.39 -0.02 2.28 16 46 H 0.08 2.24 7.82 -2.39 -0.02 2.23 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 49 H 0.41 7.91 9.06 -74.06 -0.67 7.24 16 Total: -1.00 -69.25 394.04 -0.75 -70.00 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.48 Total: 36.25 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 5.75 Total: 6.18 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -6.87 Total: -123.67 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.18 Total: -34.08 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.25 -0.75 -70.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097702085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.104 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds