Wall clock time and date at job start Wed Apr 1 2020 05:25:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50691 * 1
3 3 C 1.40197 * 120.37205 * 2 1
4 4 C 1.35347 * 119.95198 * 179.77248 * 3 2 1
5 5 N 1.35755 * 120.70015 * 0.51246 * 4 3 2
6 6 C 1.46502 * 119.62448 * 179.76161 * 5 4 3
7 7 C 1.50700 * 109.47418 * 269.72525 * 6 5 4
8 8 O 1.21284 * 119.99499 * 359.97438 * 7 6 5
9 9 N 1.34771 * 120.00250 * 179.97438 * 7 6 5
10 10 C 1.46506 * 119.99795 * 180.02562 * 9 7 6
11 11 C 1.54322 * 111.69093 * 298.98226 * 10 9 7
12 12 C 1.55053 * 104.06552 * 262.85561 * 11 10 9
13 13 C 1.55062 * 102.11077 * 319.88268 * 12 11 10
14 14 C 1.54323 * 103.93781 * 40.05216 * 13 12 11
15 15 H 1.09001 * 111.69058 * 98.07495 * 14 13 12
16 16 C 1.53777 * 109.05800 * 222.03395 * 14 13 12
17 17 N 1.47212 * 106.37787 * 94.88328 * 16 14 13
18 18 C 1.36939 * 126.70002 * 211.31991 * 17 16 14
19 19 H 1.08001 * 119.99584 * 179.97438 * 18 17 16
20 20 C 1.38813 * 120.00205 * 359.97438 * 18 17 16
21 21 N 1.31615 * 119.99629 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00004 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47160 * 89.99913 * 22 20 18
24 24 H 1.48497 * 109.46833 * 210.00031 * 22 20 18
25 25 H 1.48502 * 109.46753 * 329.99887 * 22 20 18
26 26 C 1.47209 * 106.59492 * 31.28795 * 17 16 14
27 27 C 1.34656 * 120.75388 * 359.48398 * 5 4 3
28 28 O 1.22058 * 119.99149 * 180.27730 * 27 5 4
29 29 C 1.36400 * 120.37046 * 180.02562 * 2 1 3
30 30 H 1.09010 * 109.46855 * 269.97405 * 1 2 3
31 31 H 1.08992 * 109.47287 * 29.97365 * 1 2 3
32 32 H 1.09007 * 109.47570 * 149.97919 * 1 2 3
33 33 H 1.08007 * 120.01787 * 0.04738 * 3 2 1
34 34 H 1.08001 * 119.64413 * 180.27356 * 4 3 2
35 35 H 1.09003 * 109.47175 * 149.72325 * 6 5 4
36 36 H 1.09004 * 109.47339 * 29.72511 * 6 5 4
37 37 H 0.96999 * 120.00241 * 359.97438 * 9 7 6
38 38 H 1.09002 * 110.53497 * 144.17093 * 11 10 9
39 39 H 1.09000 * 110.53530 * 21.53905 * 11 10 9
40 40 H 1.09000 * 110.90133 * 78.07741 * 12 11 10
41 41 H 1.08993 * 110.90960 * 201.67478 * 12 11 10
42 42 H 1.09000 * 110.53495 * 158.67205 * 13 12 11
43 43 H 1.09005 * 110.52989 * 281.29676 * 13 12 11
44 44 H 1.08997 * 110.07037 * 214.10975 * 16 14 13
45 45 H 1.08998 * 110.07525 * 335.65090 * 16 14 13
46 46 H 0.97008 * 119.99678 * 180.02562 * 21 20 18
47 47 H 1.09000 * 110.07789 * 87.94567 * 26 17 16
48 48 H 1.09002 * 110.07413 * 209.48394 * 26 17 16
49 49 H 1.08007 * 120.34668 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2158 1.2096 0.0000
4 6 3.5692 1.1996 0.0047
5 7 4.2537 0.0273 -0.0011
6 6 5.7187 0.0441 -0.0012
7 6 6.2210 0.0500 -1.4220
8 8 5.4328 0.0405 -2.3437
9 7 7.5459 0.0657 -1.6683
10 6 8.0341 0.0719 -3.0496
11 6 7.5839 -1.1876 -3.8193
12 6 8.8021 -2.1422 -3.7251
13 6 9.9938 -1.1691 -3.9182
14 6 9.5852 0.0830 -3.1139
15 1 10.0429 0.0934 -2.1247
16 6 9.9488 1.3397 -3.9221
17 7 8.7343 1.7245 -4.6598
18 6 8.6796 2.3369 -5.8834
19 1 7.7235 2.5711 -6.3277
20 6 9.8530 2.6566 -6.5527
21 7 11.0181 2.3715 -6.0110
22 14 9.7783 3.4926 -8.2215
23 1 9.7747 4.9661 -8.0373
24 1 10.9618 3.0972 -9.0266
25 1 8.5389 3.0789 -8.9273
26 6 7.5903 1.3217 -3.8256
27 6 3.6017 -1.1508 -0.0011
28 8 4.2311 -2.1966 -0.0012
29 6 2.1965 -1.1768 -0.0005
30 1 -0.3633 -0.0005 1.0278
31 1 -0.3633 0.8901 -0.5134
32 1 -0.3634 -0.8898 -0.5142
33 1 1.6821 2.1486 0.0008
34 1 4.1102 2.1344 0.0091
35 1 6.0922 -0.8416 0.5127
36 1 6.0718 0.9382 0.5127
37 1 8.1762 0.0736 -0.9311
38 1 7.3690 -0.9435 -4.8597
39 1 6.7105 -1.6343 -3.3442
40 1 8.8459 -2.6214 -2.7471
41 1 8.7752 -2.8868 -4.5206
42 1 10.9095 -1.6010 -3.5145
43 1 10.1204 -0.9242 -4.9728
44 1 10.2483 2.1434 -3.2495
45 1 10.7553 1.1153 -4.6202
46 1 11.8381 2.5953 -6.4785
47 1 7.3343 2.1211 -3.1303
48 1 6.7330 1.0845 -4.4556
49 1 1.6682 -2.1189 -0.0005
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001099058414.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:58
Heat of formation + Delta-G solvation = -5.987789 kcal
Electronic energy + Delta-G solvation = -31242.898348 eV
Core-core repulsion = 27171.103396 eV
Total energy + Delta-G solvation = -4071.794952 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-41.60848 -40.09290 -38.15131 -37.11825 -35.37201 -34.43750 -33.47937 -31.48829
-30.73147 -29.72557 -29.31923 -28.02912 -26.66699 -24.63889 -24.32478 -23.85680
-22.03348 -21.17965 -20.56114 -19.54709 -18.95742 -17.70865 -17.63201 -17.32192
-16.82381 -16.16836 -15.66444 -15.30791 -15.01177 -14.73434 -14.44351 -14.31304
-14.14552 -13.85096 -13.56857 -13.50908 -13.39028 -13.12665 -12.97451 -12.72209
-12.53022 -12.22433 -11.94604 -11.84832 -11.80853 -11.29555 -11.04851 -10.92942
-10.66641 -10.56275 -10.31212 -10.22729 -10.20790 -10.07990 -10.03079 -9.94989
-9.92461 -9.69279 -9.40230 -8.80518 -8.63814 -8.09320 -6.88293 -5.66512
-3.10960 0.67747 1.76152 2.34309 2.67037 3.22865 3.38992 3.44370
3.46270 3.62202 4.32616 4.41151 4.46080 4.54048 4.67056 4.80036
4.89851 4.95803 5.04002 5.13676 5.18050 5.25520 5.35440 5.37877
5.48128 5.55842 5.63715 5.78063 5.84342 5.87470 5.91033 6.02234
6.11653 6.15147 6.20285 6.26090 6.34941 6.36034 6.39801 6.57323
6.65802 6.75096 6.80904 6.93511 6.97284 7.09452 7.39243 7.60590
7.65034 7.81776 7.95440 8.31718 8.40004 9.19404 9.79607 10.46446
11.34868
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015642 B = 0.002834 C = 0.002570
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.589282 B = 9877.312382 C =10891.075301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.016 3.984
3 C -0.232 4.232
4 C 0.148 3.852
5 N -0.479 5.479
6 C 0.069 3.931
7 C 0.498 3.502
8 O -0.519 6.519
9 N -0.704 5.704
10 C 0.159 3.841
11 C -0.112 4.112
12 C -0.125 4.125
13 C -0.108 4.108
14 C -0.114 4.114
15 H 0.070 0.930
16 C 0.138 3.862
17 N -0.592 5.592
18 C -0.215 4.215
19 H 0.078 0.922
20 C -0.012 4.012
21 N -0.922 5.922
22 Si 0.916 3.084
23 H -0.289 1.289
24 H -0.290 1.290
25 H -0.281 1.281
26 C 0.144 3.856
27 C 0.523 3.477
28 O -0.553 6.553
29 C -0.250 4.250
30 H 0.079 0.921
31 H 0.074 0.926
32 H 0.073 0.927
33 H 0.145 0.855
34 H 0.161 0.839
35 H 0.127 0.873
36 H 0.120 0.880
37 H 0.397 0.603
38 H 0.077 0.923
39 H 0.063 0.937
40 H 0.057 0.943
41 H 0.060 0.940
42 H 0.056 0.944
43 H 0.080 0.920
44 H 0.003 0.997
45 H 0.130 0.870
46 H 0.253 0.747
47 H 0.012 0.988
48 H 0.050 0.950
49 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.985 -3.633 16.717 21.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.012 3.988
3 C -0.255 4.255
4 C 0.021 3.979
5 N -0.190 5.190
6 C -0.057 4.057
7 C 0.282 3.718
8 O -0.394 6.394
9 N -0.356 5.356
10 C 0.072 3.928
11 C -0.150 4.150
12 C -0.162 4.162
13 C -0.146 4.146
14 C -0.134 4.134
15 H 0.088 0.912
16 C 0.013 3.987
17 N -0.316 5.316
18 C -0.343 4.343
19 H 0.096 0.904
20 C -0.207 4.207
21 N -0.572 5.572
22 Si 0.746 3.254
23 H -0.217 1.217
24 H -0.216 1.216
25 H -0.207 1.207
26 C 0.016 3.984
27 C 0.325 3.675
28 O -0.436 6.436
29 C -0.271 4.271
30 H 0.098 0.902
31 H 0.093 0.907
32 H 0.091 0.909
33 H 0.162 0.838
34 H 0.179 0.821
35 H 0.145 0.855
36 H 0.138 0.862
37 H 0.231 0.769
38 H 0.095 0.905
39 H 0.082 0.918
40 H 0.075 0.925
41 H 0.079 0.921
42 H 0.075 0.925
43 H 0.099 0.901
44 H 0.021 0.979
45 H 0.147 0.853
46 H 0.064 0.936
47 H 0.029 0.971
48 H 0.069 0.931
49 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -12.983 -4.225 15.823 20.899
hybrid contribution 0.293 0.646 -0.366 0.798
sum -12.690 -3.579 15.457 20.316
Atomic orbital electron populations
1.20921 0.90444 1.03603 1.02931 1.20194 0.96714 0.92695 0.89213
1.20508 0.92357 0.98900 1.13726 1.21907 0.93630 0.89540 0.92825
1.45012 1.07240 1.07258 1.59452 1.21835 0.79710 1.07065 0.97073
1.20521 0.83282 0.77262 0.90738 1.90765 1.55090 1.48193 1.45354
1.45950 1.05987 1.74619 1.09005 1.21891 0.94225 0.97007 0.79636
1.22634 0.97315 0.94349 1.00709 1.22596 0.95788 0.97426 1.00414
1.22447 0.96505 0.94074 1.01580 1.23105 0.91986 0.99300 0.99045
0.91159 1.22048 0.93030 0.89560 0.94068 1.44443 1.00139 1.69014
1.18006 1.19102 0.93036 1.29950 0.92259 0.90384 1.24755 0.95109
1.01723 0.99089 1.69586 0.96625 1.52898 1.38048 0.86046 0.76998
0.79071 0.83276 1.21658 1.21617 1.20654 1.21443 0.91954 0.91980
0.93052 1.17062 0.89326 0.82432 0.78661 1.90949 1.69161 1.30277
1.53172 1.21895 0.92287 0.99493 1.13459 0.90206 0.90744 0.90852
0.83763 0.82130 0.85480 0.86229 0.76882 0.90454 0.91803 0.92464
0.92132 0.92532 0.90129 0.97874 0.85274 0.93650 0.97072 0.93143
0.83682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.75 10.03 36.00 0.36 -0.39 16
2 C 0.02 0.14 5.89 -104.55 -0.62 -0.47 16
3 C -0.23 -1.95 9.71 -39.88 -0.39 -2.34 16
4 C 0.15 1.36 10.28 -16.85 -0.17 1.18 16
5 N -0.48 -5.72 2.07 -121.06 -0.25 -5.97 16
6 C 0.07 0.72 5.81 -5.19 -0.03 0.69 16
7 C 0.50 7.37 7.21 -10.99 -0.08 7.29 16
8 O -0.52 -9.92 14.43 5.55 0.08 -9.84 16
9 N -0.70 -10.07 5.22 -45.55 -0.24 -10.30 16
10 C 0.16 2.88 0.93 -129.59 -0.12 2.76 16
11 C -0.11 -2.07 5.50 -24.95 -0.14 -2.21 16
12 C -0.12 -2.02 6.93 -24.56 -0.17 -2.19 16
13 C -0.11 -1.90 6.23 -24.95 -0.16 -2.06 16
14 C -0.11 -2.08 3.67 -88.33 -0.32 -2.41 16
15 H 0.07 1.10 7.76 -51.93 -0.40 0.69 16
16 C 0.14 3.25 5.56 -3.25 -0.02 3.23 16
17 N -0.59 -15.08 3.39 -171.22 -0.58 -15.66 16
18 C -0.22 -5.98 10.34 -15.06 -0.16 -6.14 16
19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16
21 N -0.92 -26.21 10.08 55.49 0.56 -25.65 16
22 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16
23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
26 C 0.14 3.17 5.33 -3.31 -0.02 3.16 16
27 C 0.52 7.67 7.40 -15.45 -0.11 7.56 16
28 O -0.55 -10.06 16.64 4.87 0.08 -9.98 16
29 C -0.25 -3.01 9.65 -39.38 -0.38 -3.39 16
30 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16
31 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16
32 H 0.07 0.43 8.09 -51.92 -0.42 0.01 16
33 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16
34 H 0.16 0.98 8.03 -52.49 -0.42 0.55 16
35 H 0.13 1.28 7.39 -51.93 -0.38 0.90 16
36 H 0.12 0.73 8.01 -51.93 -0.42 0.31 16
37 H 0.40 4.30 8.33 -40.82 -0.34 3.96 16
38 H 0.08 1.61 7.56 -51.93 -0.39 1.21 16
39 H 0.06 1.24 6.64 -51.93 -0.34 0.89 16
40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
43 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16
44 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16
45 H 0.13 3.39 4.88 -51.93 -0.25 3.14 16
46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16
47 H 0.01 0.26 8.08 -51.93 -0.42 -0.16 16
48 H 0.05 1.20 7.56 -51.93 -0.39 0.80 16
49 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16
LS Contribution 389.61 15.07 5.87 5.87
Total: -1.00 -35.97 389.61 -9.62 -45.59
By element:
Atomic # 1 Polarization: 12.61 SS G_CDS: -7.51 Total: 5.11 kcal
Atomic # 6 Polarization: 6.48 SS G_CDS: -2.61 Total: 3.86 kcal
Atomic # 7 Polarization: -57.06 SS G_CDS: -0.51 Total: -57.57 kcal
Atomic # 8 Polarization: -19.98 SS G_CDS: 0.16 Total: -19.82 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -35.97 -9.62 -45.59 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099058414.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.601 kcal
(2) G-P(sol) polarization free energy of solvation -35.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.988 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds