Wall clock time and date at job start Wed Apr 1 2020 05:25:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50691 * 1
3 3 C 1.40197 * 120.37205 * 2 1
4 4 C 1.35347 * 119.95198 * 179.77248 * 3 2 1
5 5 N 1.35755 * 120.70015 * 0.51246 * 4 3 2
6 6 C 1.46502 * 119.62448 * 179.76161 * 5 4 3
7 7 C 1.50700 * 109.47418 * 269.72525 * 6 5 4
8 8 O 1.21284 * 119.99499 * 359.97438 * 7 6 5
9 9 N 1.34771 * 120.00250 * 179.97438 * 7 6 5
10 10 C 1.46506 * 119.99795 * 180.02562 * 9 7 6
11 11 C 1.54322 * 111.69093 * 298.98226 * 10 9 7
12 12 C 1.55053 * 104.06552 * 262.85561 * 11 10 9
13 13 C 1.55062 * 102.11077 * 319.88268 * 12 11 10
14 14 C 1.54323 * 103.93781 * 40.05216 * 13 12 11
15 15 H 1.09001 * 111.69058 * 98.07495 * 14 13 12
16 16 C 1.53777 * 109.05800 * 222.03395 * 14 13 12
17 17 N 1.47212 * 106.37787 * 94.88328 * 16 14 13
18 18 C 1.36939 * 126.70002 * 211.31991 * 17 16 14
19 19 H 1.08001 * 119.99584 * 179.97438 * 18 17 16
20 20 C 1.38813 * 120.00205 * 359.97438 * 18 17 16
21 21 N 1.31615 * 119.99629 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00004 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47160 * 89.99913 * 22 20 18
24 24 H 1.48497 * 109.46833 * 210.00031 * 22 20 18
25 25 H 1.48502 * 109.46753 * 329.99887 * 22 20 18
26 26 C 1.47209 * 106.59492 * 31.28795 * 17 16 14
27 27 C 1.34656 * 120.75388 * 359.48398 * 5 4 3
28 28 O 1.22058 * 119.99149 * 180.27730 * 27 5 4
29 29 C 1.36400 * 120.37046 * 180.02562 * 2 1 3
30 30 H 1.09010 * 109.46855 * 269.97405 * 1 2 3
31 31 H 1.08992 * 109.47287 * 29.97365 * 1 2 3
32 32 H 1.09007 * 109.47570 * 149.97919 * 1 2 3
33 33 H 1.08007 * 120.01787 * 0.04738 * 3 2 1
34 34 H 1.08001 * 119.64413 * 180.27356 * 4 3 2
35 35 H 1.09003 * 109.47175 * 149.72325 * 6 5 4
36 36 H 1.09004 * 109.47339 * 29.72511 * 6 5 4
37 37 H 0.96999 * 120.00241 * 359.97438 * 9 7 6
38 38 H 1.09002 * 110.53497 * 144.17093 * 11 10 9
39 39 H 1.09000 * 110.53530 * 21.53905 * 11 10 9
40 40 H 1.09000 * 110.90133 * 78.07741 * 12 11 10
41 41 H 1.08993 * 110.90960 * 201.67478 * 12 11 10
42 42 H 1.09000 * 110.53495 * 158.67205 * 13 12 11
43 43 H 1.09005 * 110.52989 * 281.29676 * 13 12 11
44 44 H 1.08997 * 110.07037 * 214.10975 * 16 14 13
45 45 H 1.08998 * 110.07525 * 335.65090 * 16 14 13
46 46 H 0.97008 * 119.99678 * 180.02562 * 21 20 18
47 47 H 1.09000 * 110.07789 * 87.94567 * 26 17 16
48 48 H 1.09002 * 110.07413 * 209.48394 * 26 17 16
49 49 H 1.08007 * 120.34668 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2158 1.2096 0.0000
4 6 3.5692 1.1996 0.0047
5 7 4.2537 0.0273 -0.0011
6 6 5.7187 0.0441 -0.0012
7 6 6.2210 0.0500 -1.4220
8 8 5.4328 0.0405 -2.3437
9 7 7.5459 0.0657 -1.6683
10 6 8.0341 0.0719 -3.0496
11 6 7.5839 -1.1876 -3.8193
12 6 8.8021 -2.1422 -3.7251
13 6 9.9938 -1.1691 -3.9182
14 6 9.5852 0.0830 -3.1139
15 1 10.0429 0.0934 -2.1247
16 6 9.9488 1.3397 -3.9221
17 7 8.7343 1.7245 -4.6598
18 6 8.6796 2.3369 -5.8834
19 1 7.7235 2.5711 -6.3277
20 6 9.8530 2.6566 -6.5527
21 7 11.0181 2.3715 -6.0110
22 14 9.7783 3.4926 -8.2215
23 1 9.7747 4.9661 -8.0373
24 1 10.9618 3.0972 -9.0266
25 1 8.5389 3.0789 -8.9273
26 6 7.5903 1.3217 -3.8256
27 6 3.6017 -1.1508 -0.0011
28 8 4.2311 -2.1966 -0.0012
29 6 2.1965 -1.1768 -0.0005
30 1 -0.3633 -0.0005 1.0278
31 1 -0.3633 0.8901 -0.5134
32 1 -0.3634 -0.8898 -0.5142
33 1 1.6821 2.1486 0.0008
34 1 4.1102 2.1344 0.0091
35 1 6.0922 -0.8416 0.5127
36 1 6.0718 0.9382 0.5127
37 1 8.1762 0.0736 -0.9311
38 1 7.3690 -0.9435 -4.8597
39 1 6.7105 -1.6343 -3.3442
40 1 8.8459 -2.6214 -2.7471
41 1 8.7752 -2.8868 -4.5206
42 1 10.9095 -1.6010 -3.5145
43 1 10.1204 -0.9242 -4.9728
44 1 10.2483 2.1434 -3.2495
45 1 10.7553 1.1153 -4.6202
46 1 11.8381 2.5953 -6.4785
47 1 7.3343 2.1211 -3.1303
48 1 6.7330 1.0845 -4.4556
49 1 1.6682 -2.1189 -0.0005
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099058414.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:57
Heat of formation + Delta-G solvation = -29.921914 kcal
Electronic energy + Delta-G solvation = -31243.936209 eV
Core-core repulsion = 27171.103396 eV
Total energy + Delta-G solvation = -4072.832813 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-42.53839 -41.48450 -39.53735 -38.08274 -36.34634 -36.12609 -34.81105 -33.44525
-31.61995 -31.00803 -30.47902 -29.47807 -27.74512 -26.32844 -26.10565 -24.64699
-23.10607 -22.38562 -22.23353 -20.92432 -20.40284 -19.19287 -18.52647 -18.37773
-18.26401 -17.21209 -16.99260 -16.71721 -16.40961 -16.17237 -15.67686 -15.44285
-15.23071 -15.15921 -15.04168 -14.81216 -14.66205 -14.52077 -14.15344 -13.67205
-13.59954 -13.34706 -13.11962 -13.03063 -12.85630 -12.83359 -12.75202 -12.46204
-12.22236 -12.11837 -12.06278 -11.87833 -11.76019 -11.69414 -11.61257 -11.46474
-11.14915 -11.05828 -10.75986 -10.51105 -10.11874 -8.97470 -8.92585 -7.77611
-5.25293 -0.11276 0.92817 1.45001 1.46442 1.47563 1.52719 1.55597
2.13643 2.47568 2.70746 3.28530 3.37946 3.59602 3.64423 3.72379
3.74506 3.83936 3.86677 3.90355 4.10106 4.18575 4.34509 4.35894
4.37973 4.40970 4.45481 4.57014 4.70142 4.73609 4.78485 4.83235
4.86636 4.91352 4.93094 4.98603 5.04792 5.11293 5.16976 5.23025
5.24823 5.40609 5.45220 5.49327 5.56648 5.66022 5.68964 5.82205
6.06754 6.37352 6.51847 6.98188 7.08907 7.21516 7.73756 8.40197
9.20845
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015642 B = 0.002834 C = 0.002570
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.589282 B = 9877.312382 C =10891.075301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.032 3.968
3 C -0.232 4.232
4 C 0.139 3.861
5 N -0.482 5.482
6 C 0.075 3.925
7 C 0.495 3.505
8 O -0.568 6.568
9 N -0.692 5.692
10 C 0.173 3.827
11 C -0.108 4.108
12 C -0.112 4.112
13 C -0.104 4.104
14 C -0.101 4.101
15 H 0.111 0.889
16 C 0.140 3.860
17 N -0.612 5.612
18 C -0.239 4.239
19 H 0.071 0.929
20 C -0.058 4.058
21 N -0.941 5.941
22 Si 0.978 3.022
23 H -0.285 1.285
24 H -0.288 1.288
25 H -0.276 1.276
26 C 0.148 3.852
27 C 0.504 3.496
28 O -0.609 6.609
29 C -0.291 4.291
30 H 0.100 0.900
31 H 0.091 0.909
32 H 0.072 0.928
33 H 0.180 0.820
34 H 0.198 0.802
35 H 0.133 0.867
36 H 0.174 0.826
37 H 0.419 0.581
38 H 0.042 0.958
39 H 0.053 0.947
40 H 0.084 0.916
41 H 0.068 0.932
42 H 0.087 0.913
43 H 0.041 0.959
44 H -0.013 1.013
45 H 0.103 0.897
46 H 0.250 0.750
47 H 0.009 0.991
48 H 0.022 0.978
49 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.463 -2.652 18.796 23.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.028 3.972
3 C -0.254 4.254
4 C 0.013 3.987
5 N -0.191 5.191
6 C -0.050 4.050
7 C 0.281 3.719
8 O -0.446 6.446
9 N -0.345 5.345
10 C 0.085 3.915
11 C -0.147 4.147
12 C -0.149 4.149
13 C -0.142 4.142
14 C -0.121 4.121
15 H 0.129 0.871
16 C 0.015 3.985
17 N -0.336 5.336
18 C -0.367 4.367
19 H 0.089 0.911
20 C -0.251 4.251
21 N -0.590 5.590
22 Si 0.806 3.194
23 H -0.212 1.212
24 H -0.214 1.214
25 H -0.201 1.201
26 C 0.021 3.979
27 C 0.309 3.691
28 O -0.497 6.497
29 C -0.313 4.313
30 H 0.118 0.882
31 H 0.110 0.890
32 H 0.091 0.909
33 H 0.197 0.803
34 H 0.215 0.785
35 H 0.151 0.849
36 H 0.191 0.809
37 H 0.257 0.743
38 H 0.061 0.939
39 H 0.072 0.928
40 H 0.103 0.897
41 H 0.086 0.914
42 H 0.105 0.895
43 H 0.060 0.940
44 H 0.005 0.995
45 H 0.120 0.880
46 H 0.060 0.940
47 H 0.026 0.974
48 H 0.041 0.959
49 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -13.468 -3.216 17.958 22.677
hybrid contribution 0.328 0.471 -1.026 1.176
sum -13.140 -2.745 16.932 21.608
Atomic orbital electron populations
1.21032 0.88003 1.04450 1.04392 1.20630 0.98519 0.92084 0.85989
1.21039 0.92446 0.99843 1.12065 1.22643 0.94455 0.89731 0.91882
1.45058 1.07939 1.07404 1.58701 1.22014 0.79075 1.09944 0.93975
1.21314 0.82734 0.75611 0.92200 1.90755 1.56266 1.50211 1.47363
1.45716 1.06656 1.74299 1.07862 1.21435 0.94130 0.94535 0.81355
1.22514 0.98233 0.95334 0.98633 1.22552 0.93363 0.96730 1.02250
1.22357 0.98428 0.94122 0.99285 1.23020 0.91942 0.96890 1.00293
0.87090 1.21906 0.91798 0.91245 0.93532 1.44659 1.01867 1.69165
1.17956 1.19339 0.93035 1.30702 0.93657 0.91132 1.25514 0.94800
1.02464 1.02285 1.69821 0.96844 1.53324 1.39029 0.85089 0.76975
0.78034 0.79291 1.21160 1.21440 1.20118 1.21439 0.90278 0.93640
0.92538 1.17478 0.90262 0.82646 0.78689 1.90891 1.70193 1.32083
1.56496 1.21907 0.91656 1.00725 1.16971 0.88207 0.88988 0.90922
0.80294 0.78546 0.84881 0.80862 0.74293 0.93877 0.92780 0.89707
0.91375 0.89472 0.94002 0.99537 0.87997 0.93980 0.97354 0.95929
0.84138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.20 10.03 71.23 0.71 -0.48 16
2 C 0.03 0.54 5.89 -19.82 -0.12 0.43 16
3 C -0.23 -3.20 9.71 22.08 0.21 -2.99 16
4 C 0.14 2.15 10.28 83.42 0.86 3.01 16
5 N -0.48 -10.81 2.07 -655.07 -1.36 -12.17 16
6 C 0.07 1.38 5.81 85.63 0.50 1.88 16
7 C 0.50 14.02 7.21 87.66 0.63 14.65 16
8 O -0.57 -21.92 14.43 -3.04 -0.04 -21.96 16
9 N -0.69 -18.40 5.22 -416.42 -2.17 -20.58 16
10 C 0.17 6.21 0.93 5.04 0.00 6.21 16
11 C -0.11 -4.08 5.50 31.75 0.17 -3.91 16
12 C -0.11 -3.45 6.93 32.00 0.22 -3.22 16
13 C -0.10 -3.52 6.23 31.75 0.20 -3.32 16
14 C -0.10 -3.57 3.67 -9.31 -0.03 -3.60 16
15 H 0.11 3.04 7.76 -2.39 -0.02 3.02 16
16 C 0.14 6.69 5.56 86.51 0.48 7.17 16
17 N -0.61 -32.22 3.39 -695.60 -2.36 -34.57 16
18 C -0.24 -13.73 10.34 84.03 0.87 -12.86 16
19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16
20 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16
21 N -0.94 -54.65 10.08 21.65 0.22 -54.43 16
22 Si 0.98 45.92 29.55 68.60 2.03 47.95 16
23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16
25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
26 C 0.15 6.75 5.33 86.47 0.46 7.21 16
27 C 0.50 15.06 7.40 84.82 0.63 15.69 16
28 O -0.61 -23.12 16.64 -5.51 -0.09 -23.21 16
29 C -0.29 -7.15 9.65 22.40 0.22 -6.94 16
30 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16
31 H 0.09 0.62 8.10 -2.39 -0.02 0.60 16
32 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16
33 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16
34 H 0.20 1.51 8.03 -2.91 -0.02 1.49 16
35 H 0.13 2.41 7.39 -2.39 -0.02 2.39 16
36 H 0.17 1.29 8.01 -2.38 -0.02 1.27 16
37 H 0.42 7.52 8.33 -92.71 -0.77 6.75 16
38 H 0.04 1.89 7.56 -2.39 -0.02 1.87 16
39 H 0.05 2.14 6.64 -2.39 -0.02 2.12 16
40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16
43 H 0.04 1.75 7.57 -2.38 -0.02 1.73 16
44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
45 H 0.10 5.50 4.88 -2.39 -0.01 5.49 16
46 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16
47 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16
48 H 0.02 1.13 7.56 -2.39 -0.02 1.11 16
49 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16
Total: -1.00 -85.46 389.61 2.90 -82.56
By element:
Atomic # 1 Polarization: 20.10 SS G_CDS: 0.19 Total: 20.29 kcal
Atomic # 6 Polarization: 9.64 SS G_CDS: 6.48 Total: 16.12 kcal
Atomic # 7 Polarization: -116.08 SS G_CDS: -5.67 Total: -121.75 kcal
Atomic # 8 Polarization: -45.04 SS G_CDS: -0.14 Total: -45.18 kcal
Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal
Total: -85.46 2.90 -82.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099058414.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.641 kcal
(2) G-P(sol) polarization free energy of solvation -85.459 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds