Wall clock time and date at job start Wed Apr 1 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.55675 * 2 1 4 4 N 1.46500 * 109.46920 * 300.20215 * 3 2 1 5 5 S 1.65598 * 119.99523 * 164.99962 * 4 3 2 6 6 O 1.42101 * 104.28071 * 308.93108 * 5 4 3 7 7 O 1.42103 * 104.27787 * 181.07577 * 5 4 3 8 8 C 1.81403 * 104.45114 * 65.00132 * 5 4 3 9 9 C 1.52994 * 109.47158 * 179.97438 * 8 5 4 10 10 C 1.52996 * 109.47119 * 179.97438 * 9 8 5 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.53160 * 109.63713 * 239.74411 * 2 1 3 20 20 C 1.53053 * 109.40448 * 298.73936 * 19 2 1 21 21 O 1.43047 * 109.44077 * 300.66636 * 20 19 2 22 22 C 1.42581 * 113.85221 * 58.72937 * 21 20 19 23 23 C 1.53427 * 113.57441 * 73.88208 * 22 21 20 24 24 C 1.53840 * 86.97146 * 89.48351 * 23 22 21 25 25 C 1.53398 * 113.62053 * 171.80584 * 22 21 20 26 26 C 1.52820 * 112.93944 * 302.90503 * 22 21 20 27 27 H 1.09003 * 109.47054 * 59.99357 * 1 2 3 28 28 H 1.08997 * 109.47524 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47071 * 300.00327 * 1 2 3 30 30 H 1.09007 * 109.46765 * 180.20733 * 3 2 1 31 31 H 1.08994 * 109.47093 * 60.20557 * 3 2 1 32 32 H 0.96997 * 120.00089 * 345.00410 * 4 3 2 33 33 H 1.08998 * 109.46785 * 60.00241 * 8 5 4 34 34 H 1.08994 * 109.46954 * 300.00048 * 8 5 4 35 35 H 1.09004 * 109.46806 * 60.00263 * 9 8 5 36 36 H 1.09000 * 109.47828 * 300.00567 * 9 8 5 37 37 H 1.09004 * 109.47066 * 60.00422 * 10 9 8 38 38 H 1.08994 * 109.47405 * 300.00252 * 10 9 8 39 39 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 40 40 H 1.09001 * 109.48093 * 58.71530 * 19 2 1 41 41 H 1.09004 * 109.48571 * 178.75877 * 19 2 1 42 42 H 1.09002 * 109.47226 * 180.68060 * 20 19 2 43 43 H 1.08998 * 109.47287 * 60.65915 * 20 19 2 44 44 H 1.08993 * 113.63155 * 204.00294 * 23 22 21 45 45 H 1.08996 * 113.62839 * 334.96367 * 23 22 21 46 46 H 1.09008 * 113.60507 * 270.60246 * 24 23 22 47 47 H 1.08995 * 113.68263 * 139.74063 * 24 23 22 48 48 H 1.09002 * 113.62866 * 25.08388 * 25 22 21 49 49 H 1.08993 * 113.63382 * 156.03686 * 25 22 21 50 50 H 1.09004 * 109.56156 * 294.10173 * 26 22 21 51 51 H 1.08994 * 109.56250 * 173.76476 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5508 2.1345 -1.1937 5 16 1.6270 3.7863 -1.2825 6 8 1.0271 4.2304 -0.0733 7 8 1.0499 4.0965 -2.5435 8 6 3.4025 4.1581 -1.2863 9 6 3.6063 5.6723 -1.3671 10 6 5.1038 5.9859 -1.3695 11 6 5.3046 7.4774 -1.4485 12 1 4.4496 8.1358 -1.4921 13 6 6.5798 8.0017 -1.4588 14 7 6.7549 9.3036 -1.5222 15 14 8.0585 6.8629 -1.3828 16 1 8.4680 6.4908 -2.7608 17 1 9.1823 7.5557 -0.7025 18 1 7.7009 5.6372 -0.6245 19 6 2.0447 -0.7268 -1.2460 20 6 1.5618 -2.1790 -1.2234 21 8 2.0482 -2.8242 -0.0430 22 6 1.6343 -2.1972 1.1689 23 6 0.1588 -2.4397 1.5124 24 6 0.6257 -3.6955 2.2683 25 6 1.9882 -2.9992 2.4277 26 6 2.0431 -0.7269 1.2486 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1322 1.4401 -0.0037 31 1 1.6826 1.9550 0.8918 32 1 1.1809 1.6256 -1.9320 33 1 3.8715 3.6823 -2.1475 34 1 3.8550 3.7786 -0.3702 35 1 3.1372 6.1484 -0.5060 36 1 3.1537 6.0515 -2.2833 37 1 5.5733 5.5096 -2.2303 38 1 5.5559 5.6068 -0.4531 39 1 7.6520 9.6725 -1.5298 40 1 1.6643 -0.2311 -2.1392 41 1 3.1345 -0.7062 -1.2548 42 1 1.9376 -2.7006 -2.1037 43 1 0.4720 -2.1997 -1.2262 44 1 -0.2706 -1.6747 2.1592 45 1 -0.4618 -2.6582 0.6434 46 1 0.6629 -4.5904 1.6470 47 1 0.1050 -3.8572 3.2122 48 1 2.8388 -3.6677 2.2951 49 1 2.0643 -2.3888 3.3276 50 1 3.1296 -0.6521 1.2938 51 1 1.6071 -0.2746 2.1393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119433233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:41:05 Heat of formation + Delta-G solvation = -114.147541 kcal Electronic energy + Delta-G solvation = -29389.527844 eV Core-core repulsion = 25416.193934 eV Total energy + Delta-G solvation = -3973.333910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.39455 -37.89277 -36.94536 -36.10691 -35.81201 -34.83099 -33.40768 -32.22924 -30.29671 -28.43285 -28.31181 -26.93160 -25.83298 -23.94274 -23.60248 -23.18083 -20.54378 -19.78894 -19.30507 -19.02783 -17.61842 -17.01266 -16.84682 -16.68749 -16.08557 -15.93243 -15.46471 -15.17911 -15.01997 -14.73187 -14.35381 -14.29455 -14.18226 -14.01778 -13.66495 -13.05214 -12.85379 -12.75996 -12.39343 -12.35926 -12.18316 -12.15155 -12.03548 -11.94994 -11.87195 -11.71373 -11.60812 -11.56899 -11.26405 -11.17854 -11.01096 -10.97710 -10.95818 -10.73939 -10.24920 -10.11217 -9.94463 -9.83505 -9.63448 -9.39520 -9.26457 -8.60125 -6.09744 -4.09074 0.37551 2.77005 3.24174 3.25414 3.33035 3.34839 3.84776 4.01164 4.12977 4.14684 4.25814 4.33584 4.38970 4.40041 4.49245 4.57717 4.78361 4.80110 4.90744 4.93639 5.06191 5.07443 5.17444 5.22190 5.23465 5.24453 5.31305 5.32002 5.36995 5.43133 5.49301 5.51285 5.52364 5.61785 5.67223 5.73113 5.74787 5.82826 5.88264 5.91014 6.03323 6.12056 6.24483 6.64905 6.80718 6.90451 7.10791 7.24771 7.69600 8.46221 8.94655 9.51289 11.03526 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002366 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.300753 B =11832.441148 C =12727.074463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.065 4.065 3 C 0.124 3.876 4 N -1.123 6.123 5 S 2.603 3.397 6 O -0.960 6.960 7 O -0.962 6.962 8 C -0.615 4.615 9 C -0.098 4.098 10 C -0.004 4.004 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.067 3.933 14 N -0.900 5.900 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.148 4.148 20 C 0.059 3.941 21 O -0.356 6.356 22 C 0.096 3.904 23 C -0.162 4.162 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.125 4.125 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.015 0.985 38 H 0.020 0.980 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -29.132 5.448 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.066 4.066 3 C -0.003 4.003 4 N -0.882 5.882 5 S 2.699 3.301 6 O -0.949 6.949 7 O -0.952 6.952 8 C -0.747 4.747 9 C -0.137 4.137 10 C -0.043 4.043 11 C -0.565 4.565 12 H 0.093 0.907 13 C -0.135 4.135 14 N -0.538 5.538 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.186 4.186 20 C -0.017 4.017 21 O -0.275 6.275 22 C 0.056 3.944 23 C -0.200 4.200 24 C -0.176 4.176 25 C -0.163 4.163 26 C -0.163 4.163 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.113 0.887 50 H 0.095 0.905 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.831 -28.476 5.564 31.725 hybrid contribution 1.338 -0.629 -0.400 1.532 sum -11.493 -29.104 5.164 31.715 Atomic orbital electron populations 1.22212 0.93788 1.02671 1.02762 1.20743 0.96590 0.93730 0.95551 1.21375 0.98413 0.92692 0.87776 1.55731 1.78879 1.26897 1.26698 1.05206 0.78219 0.72484 0.74236 1.93574 1.74110 1.79723 1.47535 1.93587 1.75899 1.82293 1.43440 1.30595 1.24238 1.08750 1.11112 1.21310 1.02641 0.86999 1.02752 1.19528 0.90110 0.97931 0.96723 1.21135 0.94105 0.90095 1.51183 0.90732 1.25033 0.98992 0.94961 0.94466 1.69910 1.22353 1.10996 1.50584 0.86770 0.82519 0.81338 0.78587 1.20229 1.21260 1.19067 1.22255 1.02253 0.96055 0.98000 1.22626 0.98604 0.92677 0.87790 1.87912 1.74070 1.52698 1.12804 1.22181 0.94466 0.91685 0.86037 1.23622 0.96893 0.98670 1.00797 1.22830 0.96612 0.97579 1.00551 1.22958 0.98531 0.99044 0.95814 1.22088 1.02118 0.94402 0.97727 0.92243 0.91249 0.91953 0.91532 0.89837 0.75188 0.85298 0.85543 0.90975 0.90999 0.96628 0.96199 0.92616 0.90539 0.90445 0.88756 0.92735 0.89078 0.90888 0.89963 0.91370 0.90512 0.88735 0.90492 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 7.21 37.16 0.27 -0.82 16 2 C -0.06 -0.45 0.54 -154.26 -0.08 -0.53 16 3 C 0.12 1.02 5.03 -4.04 -0.02 1.00 16 4 N -1.12 -10.58 5.22 -10.61 -0.06 -10.64 16 5 S 2.60 35.34 5.46 -107.50 -0.59 34.76 16 6 O -0.96 -15.95 17.50 -57.54 -1.01 -16.95 16 7 O -0.96 -16.07 18.08 -57.54 -1.04 -17.11 16 8 C -0.62 -8.58 6.07 37.15 0.23 -8.35 16 9 C -0.10 -1.88 5.16 -26.74 -0.14 -2.02 16 10 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 11 C -0.53 -14.97 9.66 -34.44 -0.33 -15.31 16 12 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 15 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 19 C -0.15 -0.97 4.70 -26.62 -0.13 -1.10 16 20 C 0.06 0.39 6.48 37.18 0.24 0.64 16 21 O -0.36 -3.01 10.45 -35.23 -0.37 -3.38 16 22 C 0.10 0.67 0.98 -90.29 -0.09 0.58 16 23 C -0.16 -0.98 4.96 -26.07 -0.13 -1.11 16 24 C -0.14 -0.82 8.02 -25.85 -0.21 -1.02 16 25 C -0.13 -0.78 7.47 -26.08 -0.19 -0.98 16 26 C -0.13 -0.83 4.17 -26.66 -0.11 -0.94 16 27 H 0.06 0.43 7.19 -51.93 -0.37 0.05 16 28 H 0.07 0.42 3.20 -51.93 -0.17 0.26 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 32 H 0.41 3.24 6.49 -34.47 -0.22 3.01 16 33 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 34 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.02 0.35 7.58 -51.93 -0.39 -0.04 16 38 H 0.02 0.45 7.19 -51.93 -0.37 0.08 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 0.44 6.69 -51.93 -0.35 0.09 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.33 5.76 -51.93 -0.30 0.03 16 44 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 45 H 0.07 0.45 6.26 -51.93 -0.33 0.13 16 46 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -35.72 394.89 -10.71 -46.43 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.81 Total: -0.54 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -0.91 Total: -28.33 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.72 Total: -37.52 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -2.41 Total: -37.44 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 35.34 SS G_CDS: -0.59 Total: 34.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.72 -10.71 -46.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119433233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.714 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds