Wall clock time and date at job start Wed Apr 1 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.55675 * 2 1 4 4 N 1.46500 * 109.46920 * 300.20215 * 3 2 1 5 5 S 1.65598 * 119.99523 * 164.99962 * 4 3 2 6 6 O 1.42101 * 104.28071 * 308.93108 * 5 4 3 7 7 O 1.42103 * 104.27787 * 181.07577 * 5 4 3 8 8 C 1.81403 * 104.45114 * 65.00132 * 5 4 3 9 9 C 1.52994 * 109.47158 * 179.97438 * 8 5 4 10 10 C 1.52996 * 109.47119 * 179.97438 * 9 8 5 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.53160 * 109.63713 * 239.74411 * 2 1 3 20 20 C 1.53053 * 109.40448 * 298.73936 * 19 2 1 21 21 O 1.43047 * 109.44077 * 300.66636 * 20 19 2 22 22 C 1.42581 * 113.85221 * 58.72937 * 21 20 19 23 23 C 1.53427 * 113.57441 * 73.88208 * 22 21 20 24 24 C 1.53840 * 86.97146 * 89.48351 * 23 22 21 25 25 C 1.53398 * 113.62053 * 171.80584 * 22 21 20 26 26 C 1.52820 * 112.93944 * 302.90503 * 22 21 20 27 27 H 1.09003 * 109.47054 * 59.99357 * 1 2 3 28 28 H 1.08997 * 109.47524 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47071 * 300.00327 * 1 2 3 30 30 H 1.09007 * 109.46765 * 180.20733 * 3 2 1 31 31 H 1.08994 * 109.47093 * 60.20557 * 3 2 1 32 32 H 0.96997 * 120.00089 * 345.00410 * 4 3 2 33 33 H 1.08998 * 109.46785 * 60.00241 * 8 5 4 34 34 H 1.08994 * 109.46954 * 300.00048 * 8 5 4 35 35 H 1.09004 * 109.46806 * 60.00263 * 9 8 5 36 36 H 1.09000 * 109.47828 * 300.00567 * 9 8 5 37 37 H 1.09004 * 109.47066 * 60.00422 * 10 9 8 38 38 H 1.08994 * 109.47405 * 300.00252 * 10 9 8 39 39 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 40 40 H 1.09001 * 109.48093 * 58.71530 * 19 2 1 41 41 H 1.09004 * 109.48571 * 178.75877 * 19 2 1 42 42 H 1.09002 * 109.47226 * 180.68060 * 20 19 2 43 43 H 1.08998 * 109.47287 * 60.65915 * 20 19 2 44 44 H 1.08993 * 113.63155 * 204.00294 * 23 22 21 45 45 H 1.08996 * 113.62839 * 334.96367 * 23 22 21 46 46 H 1.09008 * 113.60507 * 270.60246 * 24 23 22 47 47 H 1.08995 * 113.68263 * 139.74063 * 24 23 22 48 48 H 1.09002 * 113.62866 * 25.08388 * 25 22 21 49 49 H 1.08993 * 113.63382 * 156.03686 * 25 22 21 50 50 H 1.09004 * 109.56156 * 294.10173 * 26 22 21 51 51 H 1.08994 * 109.56250 * 173.76476 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5508 2.1345 -1.1937 5 16 1.6270 3.7863 -1.2825 6 8 1.0271 4.2304 -0.0733 7 8 1.0499 4.0965 -2.5435 8 6 3.4025 4.1581 -1.2863 9 6 3.6063 5.6723 -1.3671 10 6 5.1038 5.9859 -1.3695 11 6 5.3046 7.4774 -1.4485 12 1 4.4496 8.1358 -1.4921 13 6 6.5798 8.0017 -1.4588 14 7 6.7549 9.3036 -1.5222 15 14 8.0585 6.8629 -1.3828 16 1 8.4680 6.4908 -2.7608 17 1 9.1823 7.5557 -0.7025 18 1 7.7009 5.6372 -0.6245 19 6 2.0447 -0.7268 -1.2460 20 6 1.5618 -2.1790 -1.2234 21 8 2.0482 -2.8242 -0.0430 22 6 1.6343 -2.1972 1.1689 23 6 0.1588 -2.4397 1.5124 24 6 0.6257 -3.6955 2.2683 25 6 1.9882 -2.9992 2.4277 26 6 2.0431 -0.7269 1.2486 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1322 1.4401 -0.0037 31 1 1.6826 1.9550 0.8918 32 1 1.1809 1.6256 -1.9320 33 1 3.8715 3.6823 -2.1475 34 1 3.8550 3.7786 -0.3702 35 1 3.1372 6.1484 -0.5060 36 1 3.1537 6.0515 -2.2833 37 1 5.5733 5.5096 -2.2303 38 1 5.5559 5.6068 -0.4531 39 1 7.6520 9.6725 -1.5298 40 1 1.6643 -0.2311 -2.1392 41 1 3.1345 -0.7062 -1.2548 42 1 1.9376 -2.7006 -2.1037 43 1 0.4720 -2.1997 -1.2262 44 1 -0.2706 -1.6747 2.1592 45 1 -0.4618 -2.6582 0.6434 46 1 0.6629 -4.5904 1.6470 47 1 0.1050 -3.8572 3.2122 48 1 2.8388 -3.6677 2.2951 49 1 2.0643 -2.3888 3.3276 50 1 3.1296 -0.6521 1.2938 51 1 1.6071 -0.2746 2.1393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119433233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:41:04 Heat of formation + Delta-G solvation = -139.626033 kcal Electronic energy + Delta-G solvation = -29390.632674 eV Core-core repulsion = 25416.193934 eV Total energy + Delta-G solvation = -3974.438740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.89840 -38.50087 -38.10973 -37.03970 -36.64304 -36.50491 -34.25257 -34.11266 -30.78420 -30.15578 -28.85679 -27.53769 -26.33071 -25.39045 -24.41703 -23.71008 -22.25087 -20.38332 -20.27872 -19.55261 -18.98193 -18.60153 -17.68884 -17.31589 -17.10500 -16.89361 -16.26397 -16.20183 -15.89426 -15.67569 -15.43091 -15.25340 -14.90859 -14.86596 -14.58820 -14.21608 -14.08939 -13.65559 -13.56114 -13.25766 -13.20939 -13.18999 -13.10390 -13.03548 -12.86442 -12.70098 -12.55322 -12.51463 -12.28946 -12.15981 -11.84760 -11.76240 -11.64835 -11.63559 -11.46245 -11.42016 -11.33908 -11.19138 -10.78029 -10.74488 -10.35203 -10.11845 -8.30359 -6.36322 -0.72571 1.36497 1.39028 1.50605 1.81139 2.35888 2.76714 2.77541 3.04733 3.23618 3.52685 3.59186 3.65523 3.71364 3.77376 3.91417 3.94681 4.01056 4.08149 4.26985 4.31413 4.34284 4.40875 4.45194 4.60794 4.65230 4.71093 4.73759 4.82395 4.84045 4.85120 4.87474 4.90901 4.96000 5.00379 5.01811 5.06723 5.09463 5.15016 5.25436 5.30559 5.33987 5.37612 5.45674 5.45801 5.52150 5.62232 6.11009 6.24767 6.41272 6.72012 7.28257 8.86600 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002366 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.300753 B =11832.441148 C =12727.074463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.060 4.060 3 C 0.114 3.886 4 N -1.106 6.106 5 S 2.626 3.374 6 O -0.992 6.992 7 O -0.996 6.996 8 C -0.610 4.610 9 C -0.104 4.104 10 C -0.005 4.005 11 C -0.544 4.544 12 H 0.029 0.971 13 C -0.001 4.001 14 N -0.952 5.952 15 Si 0.956 3.044 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.237 1.237 19 C -0.147 4.147 20 C 0.056 3.944 21 O -0.375 6.375 22 C 0.090 3.910 23 C -0.159 4.159 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.124 4.124 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.423 0.577 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.267 0.733 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.107 0.893 50 H 0.076 0.924 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 -32.184 5.857 34.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.061 4.061 3 C -0.012 4.012 4 N -0.868 5.868 5 S 2.721 3.279 6 O -0.982 6.982 7 O -0.986 6.986 8 C -0.742 4.742 9 C -0.144 4.144 10 C -0.044 4.044 11 C -0.582 4.582 12 H 0.047 0.953 13 C -0.197 4.197 14 N -0.593 5.593 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.160 1.160 19 C -0.185 4.185 20 C -0.020 4.020 21 O -0.295 6.295 22 C 0.051 3.949 23 C -0.197 4.197 24 C -0.175 4.175 25 C -0.165 4.165 26 C -0.163 4.163 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.261 0.739 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.095 0.905 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.976 -31.541 5.966 34.262 hybrid contribution 0.979 0.342 -0.519 1.160 sum -10.997 -31.199 5.447 33.525 Atomic orbital electron populations 1.22237 0.93905 1.03088 1.02398 1.20699 0.96461 0.92922 0.96052 1.21635 0.99670 0.93088 0.86794 1.55290 1.78762 1.25168 1.27622 1.04263 0.77692 0.73183 0.72712 1.93534 1.74927 1.81010 1.48730 1.93539 1.76740 1.83495 1.44847 1.30508 1.24940 1.04786 1.13918 1.21175 1.00035 0.91097 1.02051 1.19506 0.92979 0.94161 0.97716 1.21567 0.92978 0.92862 1.50812 0.95260 1.26135 1.02893 0.96764 0.93930 1.70086 1.23368 1.13547 1.52265 0.85580 0.77474 0.79670 0.79446 1.19029 1.21168 1.16036 1.22259 1.02155 0.95985 0.98089 1.22728 0.98922 0.92772 0.87582 1.87889 1.74493 1.53459 1.13622 1.22288 0.95013 0.91810 0.85820 1.23613 0.96396 0.98857 1.00812 1.22815 0.96624 0.97247 1.00854 1.23017 0.98296 0.99055 0.96093 1.22095 1.02140 0.94187 0.97835 0.92600 0.90495 0.92344 0.89579 0.90281 0.73933 0.82622 0.82755 0.91920 0.92017 0.95121 0.94890 0.92444 0.89680 0.90591 0.88032 0.92308 0.88356 0.91131 0.90757 0.90436 0.91326 0.87516 0.90521 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 7.21 71.98 0.52 -1.37 16 2 C -0.06 -0.68 0.54 -52.02 -0.03 -0.71 16 3 C 0.11 1.54 5.03 86.38 0.43 1.98 16 4 N -1.11 -18.05 5.22 -187.48 -0.98 -19.03 16 5 S 2.63 67.11 5.46 -56.49 -0.31 66.80 16 6 O -0.99 -32.08 17.50 -127.65 -2.23 -34.32 16 7 O -1.00 -32.39 18.08 -127.65 -2.31 -34.70 16 8 C -0.61 -15.22 6.07 71.98 0.44 -14.79 16 9 C -0.10 -3.92 5.16 30.59 0.16 -3.77 16 10 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 11 C -0.54 -31.48 9.66 25.60 0.25 -31.24 16 12 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 13 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 14 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 15 Si 0.96 43.03 27.47 68.60 1.88 44.91 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 19 C -0.15 -1.56 4.70 30.67 0.14 -1.41 16 20 C 0.06 0.64 6.48 72.00 0.47 1.10 16 21 O -0.38 -5.76 10.45 -148.98 -1.56 -7.32 16 22 C 0.09 1.09 0.98 -10.58 -0.01 1.08 16 23 C -0.16 -1.64 4.96 31.02 0.15 -1.49 16 24 C -0.14 -1.43 8.02 31.16 0.25 -1.18 16 25 C -0.13 -1.38 7.47 31.01 0.23 -1.15 16 26 C -0.12 -1.36 4.17 30.64 0.13 -1.24 16 27 H 0.05 0.70 7.19 -2.39 -0.02 0.68 16 28 H 0.08 0.79 3.20 -2.39 -0.01 0.78 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.19 7.69 -2.39 -0.02 1.17 16 32 H 0.42 5.54 6.49 -96.75 -0.63 4.91 16 33 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.03 1.28 7.58 -2.38 -0.02 1.26 16 38 H 0.03 1.39 7.19 -2.39 -0.02 1.37 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.08 0.74 6.69 -2.39 -0.02 0.72 16 41 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.60 5.76 -2.39 -0.01 0.59 16 44 H 0.10 0.87 7.87 -2.39 -0.02 0.85 16 45 H 0.07 0.76 6.26 -2.39 -0.01 0.75 16 46 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.11 0.86 8.09 -2.39 -0.02 0.84 16 50 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.09 0.83 8.04 -2.39 -0.02 0.81 16 Total: -1.00 -78.86 394.89 -1.26 -80.12 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.23 Total: 17.20 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 3.72 Total: -53.86 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -0.68 Total: -78.84 kcal Atomic # 8 Polarization: -70.24 SS G_CDS: -6.10 Total: -76.34 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Atomic # 16 Polarization: 67.11 SS G_CDS: -0.31 Total: 66.80 kcal Total: -78.86 -1.26 -80.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119433233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.507 kcal (2) G-P(sol) polarization free energy of solvation -78.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds