Wall clock time and date at job start Wed Apr 1 2020 04:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38357 * 119.41102 * 2 1 4 4 C 1.38338 * 119.45914 * 180.25946 * 3 2 1 5 5 C 1.50693 * 120.82398 * 179.75747 * 4 3 2 6 6 C 1.39987 * 118.34544 * 359.47523 * 4 3 2 7 7 C 1.47524 * 120.59462 * 180.23382 * 6 4 3 8 8 O 1.21589 * 120.00408 * 90.00050 * 7 6 4 9 9 N 1.34778 * 120.00240 * 270.00074 * 7 6 4 10 10 C 1.46493 * 120.00245 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47055 * 179.97438 * 11 10 9 13 13 C 1.29453 * 117.69041 * 95.00472 * 12 11 10 14 14 C 1.50322 * 123.64888 * 180.85560 * 13 12 11 15 15 N 1.47004 * 109.16795 * 349.02196 * 14 13 12 16 16 C 1.36933 * 121.37743 * 222.97222 * 15 14 13 17 17 H 1.08000 * 120.00399 * 155.96875 * 16 15 14 18 18 C 1.38819 * 119.99884 * 335.96692 * 16 15 14 19 19 N 1.31617 * 119.99790 * 344.51924 * 18 16 15 20 20 Si 1.86793 * 120.00252 * 164.51873 * 18 16 15 21 21 H 1.48504 * 109.47011 * 89.99622 * 20 18 16 22 22 H 1.48498 * 109.47418 * 209.99950 * 20 18 16 23 23 H 1.48505 * 109.47146 * 330.00343 * 20 18 16 24 24 C 1.47343 * 117.24918 * 42.94551 * 15 14 13 25 25 C 1.49960 * 117.69631 * 274.74103 * 12 11 10 26 26 C 1.40281 * 118.80922 * 0.25357 * 6 4 3 27 27 O 1.35421 * 119.79890 * 179.97438 * 26 6 4 28 28 N 1.31889 * 119.40458 * 179.72526 * 2 1 3 29 29 H 1.09004 * 109.47226 * 270.27913 * 1 2 3 30 30 H 1.09002 * 109.47169 * 30.27468 * 1 2 3 31 31 H 1.08997 * 109.47671 * 150.27561 * 1 2 3 32 32 H 1.07999 * 120.26821 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46851 * 269.71006 * 5 4 3 34 34 H 1.09001 * 109.47255 * 149.71852 * 5 4 3 35 35 H 1.08994 * 109.47339 * 29.71473 * 5 4 3 36 36 H 0.97001 * 119.99811 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47382 * 300.00000 * 10 9 7 38 38 H 1.08996 * 109.47270 * 60.00355 * 10 9 7 39 39 H 1.09002 * 109.47001 * 300.00322 * 11 10 9 40 40 H 1.09003 * 109.46407 * 60.00390 * 11 10 9 41 41 H 1.08001 * 118.17508 * 0.87474 * 13 12 11 42 42 H 1.09005 * 109.52386 * 108.93021 * 14 13 12 43 43 H 1.09002 * 109.52083 * 229.11262 * 14 13 12 44 44 H 0.96999 * 120.00003 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.77706 * 57.80916 * 24 15 14 46 46 H 1.09000 * 109.77909 * 178.62036 * 24 15 14 47 47 H 1.09010 * 109.31639 * 281.29151 * 25 12 11 48 48 H 1.08998 * 109.31808 * 40.71524 * 25 12 11 49 49 H 0.96706 * 113.99788 * 90.00479 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 -0.0055 5 6 4.3408 2.5011 -0.0111 6 6 4.2355 -0.0250 0.0005 7 6 5.7096 -0.0816 0.0002 8 8 6.3176 -0.0997 1.0531 9 7 6.3827 -0.1133 -1.1670 10 6 7.8465 -0.1690 -1.1673 11 6 8.3557 -0.1965 -2.6099 12 6 9.8616 -0.2531 -2.6101 13 6 10.4198 -1.4174 -2.7035 14 6 11.9079 -1.6306 -2.6978 15 7 12.5821 -0.3317 -2.8377 16 6 13.6606 -0.1739 -3.6665 17 1 13.9008 0.8027 -4.0601 18 6 14.4452 -1.2692 -4.0008 19 7 14.3541 -2.3814 -3.3030 20 14 15.6303 -1.1645 -5.4409 21 1 16.9496 -0.6792 -4.9620 22 1 15.7890 -2.5094 -6.0502 23 1 15.0945 -0.2215 -6.4553 24 6 12.0490 0.7934 -2.0497 25 6 10.6079 1.0436 -2.5081 26 6 3.4757 -1.2042 0.0062 27 8 4.0990 -2.4064 0.0114 28 7 2.1545 -1.1490 0.0055 29 1 -0.3634 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6412 2.1375 -0.0004 33 1 4.5271 2.8085 -1.0402 34 1 5.2912 2.3603 0.5036 35 1 3.7619 3.2710 0.4990 36 1 5.8978 -0.0985 -2.0070 37 1 8.2437 0.7092 -0.6581 38 1 8.1760 -1.0694 -0.6489 39 1 7.9586 -1.0749 -3.1186 40 1 8.0262 0.7038 -3.1286 41 1 9.7809 -2.2837 -2.7907 42 1 12.2056 -2.0962 -1.7582 43 1 12.1864 -2.2771 -3.5300 44 1 14.9026 -3.1467 -3.5363 45 1 12.0642 0.5410 -0.9894 46 1 12.6508 1.6850 -2.2260 47 1 10.6154 1.5329 -3.4822 48 1 10.1092 1.6908 -1.7867 49 1 4.2803 -2.7516 0.8964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160815813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:18 Heat of formation + Delta-G solvation = -13.084478 kcal Electronic energy + Delta-G solvation = -29378.066485 eV Core-core repulsion = 25305.963798 eV Total energy + Delta-G solvation = -4072.102687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = -10.02 seconds Orbital eigenvalues (eV) -41.33053 -39.41735 -37.88879 -37.73459 -35.45994 -34.65332 -33.54086 -32.23623 -31.37961 -29.89773 -29.28787 -28.33674 -27.86212 -25.36931 -23.88478 -23.04485 -22.54504 -22.01996 -21.00568 -20.64771 -18.81821 -18.07898 -17.63024 -17.56289 -16.50901 -16.00108 -15.64643 -15.35197 -15.07036 -14.92668 -14.61658 -14.17602 -14.00393 -13.88134 -13.76746 -13.54946 -13.46757 -13.44018 -13.16532 -12.86858 -12.62544 -12.43574 -12.29644 -12.20941 -12.03960 -12.00491 -11.57773 -11.41835 -11.02078 -10.90914 -10.71276 -10.57225 -10.31006 -10.22407 -10.01617 -9.80885 -9.76108 -9.53026 -9.25200 -9.21059 -8.64029 -7.91270 -6.70804 -5.77206 -3.15754 0.33617 0.64325 2.29679 2.76643 2.88675 3.06787 3.31074 3.38746 3.45442 3.47691 4.00661 4.05740 4.36708 4.51066 4.53136 4.73251 4.83318 4.92740 5.06544 5.08932 5.10690 5.12622 5.17911 5.27932 5.36469 5.41415 5.49648 5.56347 5.57576 5.64274 5.67894 5.78958 5.99045 6.00857 6.04313 6.14764 6.21436 6.28738 6.39969 6.56930 6.79862 6.91809 7.02688 7.23658 7.25810 7.34873 7.42513 7.42957 7.76534 7.89820 7.94524 8.40851 9.22259 9.85256 10.43970 11.33208 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.001825 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.023497 B =15336.282372 C =15751.863689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.187 4.187 4 C 0.012 3.988 5 C -0.127 4.127 6 C -0.204 4.204 7 C 0.574 3.426 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.124 3.876 11 C -0.091 4.091 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.196 3.804 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.909 5.909 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.143 3.857 25 C -0.091 4.091 26 C 0.357 3.643 27 O -0.476 6.476 28 N -0.507 5.507 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.619 7.756 6.295 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.207 4.207 4 C 0.004 3.996 5 C -0.183 4.183 6 C -0.210 4.210 7 C 0.359 3.641 8 O -0.408 6.408 9 N -0.365 5.365 10 C 0.001 3.999 11 C -0.129 4.129 12 C -0.144 4.144 13 C -0.165 4.165 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.375 4.375 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.554 5.554 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.016 3.984 25 C -0.130 4.130 26 C 0.177 3.823 27 O -0.284 6.284 28 N -0.227 5.227 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -28.460 6.823 6.419 29.962 hybrid contribution 0.847 0.409 -0.686 1.164 sum -27.613 7.232 5.734 29.114 Atomic orbital electron populations 1.20814 0.88055 1.04025 1.03599 1.21206 0.97044 0.87039 0.91627 1.21796 0.93609 0.99681 1.05650 1.20284 0.93697 0.94190 0.91393 1.20967 1.00574 0.93043 1.03709 1.20912 0.95004 0.94139 1.10977 1.17752 0.85902 0.76212 0.84284 1.90845 1.69254 1.49495 1.31175 1.46096 1.08249 1.74033 1.08143 1.21513 0.77422 1.02935 0.98034 1.20912 0.95104 1.02251 0.94657 1.20212 0.92285 0.95889 1.06047 1.23136 1.00033 0.95958 0.97342 1.19710 0.83794 0.88391 1.00991 1.44129 1.33059 1.05463 1.49212 1.19169 1.03130 0.95071 1.20089 0.91444 1.24991 0.98095 0.97309 0.99608 1.70016 1.42444 1.03877 1.39112 0.86266 0.80937 0.76857 0.82544 1.21451 1.21593 1.20592 1.20991 0.91568 0.92018 0.93796 1.20788 0.97686 0.94019 1.00467 1.19011 0.86343 0.84465 0.92489 1.84691 1.76594 1.32656 1.34419 1.67070 1.09110 1.30439 1.16056 0.89811 0.90120 0.90025 0.83721 0.89566 0.90324 0.90001 0.76540 0.91049 0.91007 0.91440 0.91471 0.89034 0.94391 0.89138 0.93639 0.95801 0.92576 0.91934 0.92965 0.73223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.16 36.00 0.37 -0.13 16 2 C 0.17 1.35 6.78 -82.53 -0.56 0.79 16 3 C -0.19 -1.29 9.41 -39.50 -0.37 -1.66 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -0.85 9.69 36.00 0.35 -0.50 16 6 C -0.20 -2.20 5.66 -104.69 -0.59 -2.79 16 7 C 0.57 7.26 5.42 -12.47 -0.07 7.19 16 8 O -0.53 -8.64 17.11 5.29 0.09 -8.55 16 9 N -0.72 -7.99 5.55 -61.35 -0.34 -8.33 16 10 C 0.12 1.59 5.66 -4.04 -0.02 1.57 16 11 C -0.09 -1.19 5.32 -27.88 -0.15 -1.34 16 12 C -0.14 -2.47 5.11 -100.99 -0.52 -2.98 16 13 C -0.15 -2.83 9.47 -35.78 -0.34 -3.17 16 14 C 0.20 4.76 5.23 -5.10 -0.03 4.73 16 15 N -0.60 -15.14 3.01 -173.56 -0.52 -15.66 16 16 C -0.25 -6.79 9.71 -15.06 -0.15 -6.93 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 18 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 19 N -0.91 -26.51 11.08 55.49 0.61 -25.89 16 20 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.14 3.02 6.59 -3.43 -0.02 3.00 16 25 C -0.09 -1.59 5.95 -28.09 -0.17 -1.76 16 26 C 0.36 3.98 7.77 -16.61 -0.13 3.85 16 27 O -0.48 -5.11 13.01 -17.95 -0.23 -5.34 16 28 N -0.51 -5.42 10.28 -9.21 -0.09 -5.52 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.69 7.19 -51.93 -0.37 0.31 16 35 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.40 3.65 8.46 -40.82 -0.35 3.30 16 37 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 40 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 41 H 0.09 1.59 7.73 -52.49 -0.41 1.19 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 47 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 48 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 49 H 0.41 2.82 9.06 45.56 0.41 3.23 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -34.61 406.14 -9.39 -44.00 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.90 Total: 3.14 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.10 Total: -0.79 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.34 Total: -55.40 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.14 Total: -13.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.61 -9.39 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160815813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.916 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -10.02 seconds