Wall clock time and date at job start Wed Apr 1 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38357 * 119.41102 * 2 1 4 4 C 1.38338 * 119.45914 * 180.25946 * 3 2 1 5 5 C 1.50693 * 120.82398 * 179.75747 * 4 3 2 6 6 C 1.39987 * 118.34544 * 359.47523 * 4 3 2 7 7 C 1.47524 * 120.59462 * 180.23382 * 6 4 3 8 8 O 1.21589 * 120.00408 * 90.00050 * 7 6 4 9 9 N 1.34778 * 120.00240 * 270.00074 * 7 6 4 10 10 C 1.46493 * 120.00245 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47055 * 179.97438 * 11 10 9 13 13 C 1.29453 * 117.69041 * 95.00472 * 12 11 10 14 14 C 1.50322 * 123.64888 * 180.85560 * 13 12 11 15 15 N 1.47004 * 109.16795 * 349.02196 * 14 13 12 16 16 C 1.36933 * 121.37743 * 222.97222 * 15 14 13 17 17 H 1.08000 * 120.00399 * 155.96875 * 16 15 14 18 18 C 1.38819 * 119.99884 * 335.96692 * 16 15 14 19 19 N 1.31617 * 119.99790 * 344.51924 * 18 16 15 20 20 Si 1.86793 * 120.00252 * 164.51873 * 18 16 15 21 21 H 1.48504 * 109.47011 * 89.99622 * 20 18 16 22 22 H 1.48498 * 109.47418 * 209.99950 * 20 18 16 23 23 H 1.48505 * 109.47146 * 330.00343 * 20 18 16 24 24 C 1.47343 * 117.24918 * 42.94551 * 15 14 13 25 25 C 1.49960 * 117.69631 * 274.74103 * 12 11 10 26 26 C 1.40281 * 118.80922 * 0.25357 * 6 4 3 27 27 O 1.35421 * 119.79890 * 179.97438 * 26 6 4 28 28 N 1.31889 * 119.40458 * 179.72526 * 2 1 3 29 29 H 1.09004 * 109.47226 * 270.27913 * 1 2 3 30 30 H 1.09002 * 109.47169 * 30.27468 * 1 2 3 31 31 H 1.08997 * 109.47671 * 150.27561 * 1 2 3 32 32 H 1.07999 * 120.26821 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46851 * 269.71006 * 5 4 3 34 34 H 1.09001 * 109.47255 * 149.71852 * 5 4 3 35 35 H 1.08994 * 109.47339 * 29.71473 * 5 4 3 36 36 H 0.97001 * 119.99811 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47382 * 300.00000 * 10 9 7 38 38 H 1.08996 * 109.47270 * 60.00355 * 10 9 7 39 39 H 1.09002 * 109.47001 * 300.00322 * 11 10 9 40 40 H 1.09003 * 109.46407 * 60.00390 * 11 10 9 41 41 H 1.08001 * 118.17508 * 0.87474 * 13 12 11 42 42 H 1.09005 * 109.52386 * 108.93021 * 14 13 12 43 43 H 1.09002 * 109.52083 * 229.11262 * 14 13 12 44 44 H 0.96999 * 120.00003 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.77706 * 57.80916 * 24 15 14 46 46 H 1.09000 * 109.77909 * 178.62036 * 24 15 14 47 47 H 1.09010 * 109.31639 * 281.29151 * 25 12 11 48 48 H 1.08998 * 109.31808 * 40.71524 * 25 12 11 49 49 H 0.96706 * 113.99788 * 90.00479 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 -0.0055 5 6 4.3408 2.5011 -0.0111 6 6 4.2355 -0.0250 0.0005 7 6 5.7096 -0.0816 0.0002 8 8 6.3176 -0.0997 1.0531 9 7 6.3827 -0.1133 -1.1670 10 6 7.8465 -0.1690 -1.1673 11 6 8.3557 -0.1965 -2.6099 12 6 9.8616 -0.2531 -2.6101 13 6 10.4198 -1.4174 -2.7035 14 6 11.9079 -1.6306 -2.6978 15 7 12.5821 -0.3317 -2.8377 16 6 13.6606 -0.1739 -3.6665 17 1 13.9008 0.8027 -4.0601 18 6 14.4452 -1.2692 -4.0008 19 7 14.3541 -2.3814 -3.3030 20 14 15.6303 -1.1645 -5.4409 21 1 16.9496 -0.6792 -4.9620 22 1 15.7890 -2.5094 -6.0502 23 1 15.0945 -0.2215 -6.4553 24 6 12.0490 0.7934 -2.0497 25 6 10.6079 1.0436 -2.5081 26 6 3.4757 -1.2042 0.0062 27 8 4.0990 -2.4064 0.0114 28 7 2.1545 -1.1490 0.0055 29 1 -0.3634 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6412 2.1375 -0.0004 33 1 4.5271 2.8085 -1.0402 34 1 5.2912 2.3603 0.5036 35 1 3.7619 3.2710 0.4990 36 1 5.8978 -0.0985 -2.0070 37 1 8.2437 0.7092 -0.6581 38 1 8.1760 -1.0694 -0.6489 39 1 7.9586 -1.0749 -3.1186 40 1 8.0262 0.7038 -3.1286 41 1 9.7809 -2.2837 -2.7907 42 1 12.2056 -2.0962 -1.7582 43 1 12.1864 -2.2771 -3.5300 44 1 14.9026 -3.1467 -3.5363 45 1 12.0642 0.5410 -0.9894 46 1 12.6508 1.6850 -2.2260 47 1 10.6154 1.5329 -3.4822 48 1 10.1092 1.6908 -1.7867 49 1 4.2803 -2.7516 0.8964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160815813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:43 Heat of formation + Delta-G solvation = -39.256976 kcal Electronic energy + Delta-G solvation = -29379.201409 eV Core-core repulsion = 25305.963798 eV Total energy + Delta-G solvation = -4073.237612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 10.46 seconds Orbital eigenvalues (eV) -42.05833 -40.37382 -39.44037 -38.45211 -36.78692 -35.34956 -35.05665 -33.20243 -32.77613 -31.50660 -30.51361 -29.25264 -28.45458 -27.04248 -24.94400 -24.42763 -23.89018 -22.80829 -22.48907 -21.58716 -19.53324 -19.47760 -18.93855 -18.29486 -17.71046 -17.21107 -16.97865 -16.65305 -16.29171 -15.89730 -15.67385 -15.41047 -15.25956 -15.13579 -14.83876 -14.74268 -14.31406 -14.21127 -14.05031 -13.94691 -13.81091 -13.40453 -13.25089 -13.20832 -12.99243 -12.89203 -12.84490 -12.78397 -12.64148 -12.57648 -12.38972 -12.19347 -11.92246 -11.68511 -11.50793 -11.17826 -10.68466 -10.65375 -10.51080 -10.23090 -9.88787 -9.50051 -8.75350 -7.88408 -5.30415 -0.32314 0.01883 1.33960 1.39916 1.46052 1.47405 1.57258 2.06198 2.26673 2.50752 2.62674 3.28442 3.38266 3.53974 3.59437 3.67497 3.93592 3.97107 4.06666 4.08614 4.18715 4.27094 4.28863 4.50885 4.55367 4.56970 4.57908 4.65483 4.67145 4.81063 4.85801 4.89571 4.95423 4.96189 5.01635 5.03506 5.12186 5.16453 5.19063 5.23281 5.29373 5.41312 5.49812 5.50512 5.60510 5.87117 6.26627 6.33255 6.35458 6.37302 6.78705 7.02127 7.12661 7.83030 8.38017 9.20293 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.001825 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.023497 B =15336.282372 C =15751.863689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.176 4.176 4 C 0.009 3.991 5 C -0.124 4.124 6 C -0.222 4.222 7 C 0.580 3.420 8 O -0.575 6.575 9 N -0.702 5.702 10 C 0.132 3.868 11 C -0.079 4.079 12 C -0.119 4.119 13 C -0.175 4.175 14 C 0.207 3.793 15 N -0.615 5.615 16 C -0.257 4.257 17 H 0.072 0.928 18 C -0.058 4.058 19 N -0.942 5.942 20 Si 0.971 3.029 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.269 1.269 24 C 0.135 3.865 25 C -0.086 4.086 26 C 0.340 3.660 27 O -0.491 6.491 28 N -0.532 5.532 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.414 0.586 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.002 0.998 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.018 0.982 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.706 10.635 5.282 33.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.195 4.195 4 C 0.002 3.998 5 C -0.180 4.180 6 C -0.229 4.229 7 C 0.365 3.635 8 O -0.454 6.454 9 N -0.353 5.353 10 C 0.009 3.991 11 C -0.116 4.116 12 C -0.120 4.120 13 C -0.194 4.194 14 C 0.082 3.918 15 N -0.339 5.339 16 C -0.387 4.387 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.589 5.589 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.194 1.194 24 C 0.009 3.991 25 C -0.125 4.125 26 C 0.161 3.839 27 O -0.302 6.302 28 N -0.253 5.253 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.201 0.799 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.250 0.750 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -31.583 9.730 5.391 33.484 hybrid contribution 1.723 -0.392 -0.295 1.791 sum -29.860 9.338 5.097 31.699 Atomic orbital electron populations 1.20939 0.85638 1.05063 1.04643 1.21893 0.98660 0.86796 0.90286 1.22184 0.92917 1.00800 1.03616 1.20596 0.94648 0.93917 0.90688 1.21017 0.99552 0.92768 1.04687 1.20805 0.93607 0.95208 1.13264 1.18020 0.86727 0.74983 0.83741 1.90816 1.70367 1.51554 1.32706 1.45926 1.07524 1.73266 1.08561 1.21261 0.78447 1.01809 0.97577 1.20804 0.91562 1.04288 0.94975 1.20562 0.94877 0.94772 1.01764 1.22824 0.97107 0.98003 1.01488 1.19342 0.87117 0.87550 0.97837 1.44419 1.33032 1.06711 1.49724 1.19543 1.03608 0.95284 1.20301 0.91012 1.25812 1.00192 0.97105 1.02145 1.70199 1.43537 1.04458 1.40691 0.85213 0.78758 0.76632 0.79481 1.21094 1.21979 1.19402 1.21203 0.94010 0.90762 0.93092 1.20749 0.95245 0.94783 1.01687 1.19143 0.86801 0.84490 0.93445 1.84639 1.76809 1.33070 1.35632 1.67120 1.08881 1.32111 1.17218 0.88621 0.87281 0.90776 0.79862 0.87996 0.92703 0.87508 0.75002 0.91385 0.93150 0.90285 0.88605 0.87198 0.98021 0.92725 0.94177 0.96393 0.92140 0.91176 0.89379 0.72042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 71.23 0.72 0.07 16 2 C 0.16 2.19 6.78 42.58 0.29 2.48 16 3 C -0.18 -1.81 9.41 22.32 0.21 -1.60 16 4 C 0.01 0.14 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.31 9.69 71.23 0.69 -0.62 16 6 C -0.22 -4.60 5.66 -19.91 -0.11 -4.71 16 7 C 0.58 14.37 5.42 86.69 0.47 14.84 16 8 O -0.57 -18.97 17.11 -4.00 -0.07 -19.04 16 9 N -0.70 -14.61 5.55 -466.28 -2.59 -17.20 16 10 C 0.13 3.19 5.66 86.38 0.49 3.68 16 11 C -0.08 -1.80 5.32 29.85 0.16 -1.65 16 12 C -0.12 -3.88 5.11 -15.14 -0.08 -3.96 16 13 C -0.17 -6.86 9.47 27.11 0.26 -6.60 16 14 C 0.21 10.54 5.23 85.42 0.45 10.98 16 15 N -0.61 -32.01 3.01 -703.02 -2.11 -34.12 16 16 C -0.26 -14.50 9.71 84.04 0.82 -13.68 16 17 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 18 C -0.06 -3.32 5.01 84.86 0.43 -2.90 16 19 N -0.94 -57.31 11.08 21.65 0.24 -57.07 16 20 Si 0.97 45.72 29.58 68.60 2.03 47.75 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.13 5.66 6.59 86.31 0.57 6.23 16 25 C -0.09 -2.81 5.95 29.71 0.18 -2.64 16 26 C 0.34 7.52 7.77 85.13 0.66 8.18 16 27 O -0.49 -10.84 13.01 -87.16 -1.13 -11.97 16 28 N -0.53 -10.93 10.28 -296.07 -3.04 -13.98 16 29 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.11 0.06 8.07 -2.39 -0.02 0.04 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.87 7.19 -2.39 -0.02 0.86 16 35 H 0.11 0.58 8.10 -2.39 -0.02 0.56 16 36 H 0.41 6.53 8.46 -92.71 -0.78 5.75 16 37 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.71 7.78 -2.39 -0.02 1.70 16 40 H 0.10 1.75 8.11 -2.39 -0.02 1.73 16 41 H 0.11 3.84 7.73 -2.91 -0.02 3.81 16 42 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 43 H 0.05 3.12 6.41 -2.39 -0.02 3.10 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 47 H 0.07 2.26 8.14 -2.38 -0.02 2.25 16 48 H 0.09 2.31 8.10 -2.39 -0.02 2.29 16 49 H 0.42 6.29 9.06 -74.05 -0.67 5.62 16 Total: -1.00 -79.41 406.14 -1.08 -80.49 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.48 Total: 17.02 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.08 Total: 8.13 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -7.51 Total: -122.36 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.20 Total: -31.02 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.41 -1.08 -80.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160815813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.231 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.46 seconds