Wall clock time and date at job start Wed Apr 1 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40194 * 120.37001 * 2 1 4 4 C 1.35351 * 119.94618 * 180.02562 * 3 2 1 5 5 N 1.35766 * 120.70259 * 359.97438 * 4 3 2 6 6 C 1.46495 * 119.62182 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47154 * 270.02111 * 6 5 4 8 8 O 1.21284 * 119.99944 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00099 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00029 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47350 * 179.97438 * 11 10 9 13 13 C 1.29459 * 117.69440 * 94.99678 * 12 11 10 14 14 C 1.50313 * 123.64858 * 180.85985 * 13 12 11 15 15 N 1.47002 * 109.17258 * 349.02136 * 14 13 12 16 16 C 1.36939 * 121.38178 * 222.97362 * 15 14 13 17 17 H 1.07997 * 119.99905 * 155.96559 * 16 15 14 18 18 C 1.38811 * 119.99493 * 335.96134 * 16 15 14 19 19 N 1.31616 * 120.00314 * 344.52865 * 18 16 15 20 20 Si 1.86797 * 119.99501 * 164.52432 * 18 16 15 21 21 H 1.48499 * 109.47342 * 60.00270 * 20 18 16 22 22 H 1.48498 * 109.47002 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47406 * 299.99928 * 20 18 16 24 24 C 1.47348 * 117.24602 * 42.94882 * 15 14 13 25 25 C 1.49966 * 117.69376 * 274.73903 * 12 11 10 26 26 C 1.34654 * 120.75051 * 0.02562 * 5 4 3 27 27 O 1.22067 * 119.98708 * 179.97438 * 26 5 4 28 28 C 1.36407 * 120.36237 * 180.25969 * 2 1 3 29 29 H 1.09000 * 109.47320 * 89.99807 * 1 2 3 30 30 H 1.08996 * 109.47354 * 210.00149 * 1 2 3 31 31 H 1.09005 * 109.46990 * 330.00039 * 1 2 3 32 32 H 1.07994 * 120.02761 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.64690 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47565 * 30.02126 * 6 5 4 35 35 H 1.09007 * 109.46823 * 150.02100 * 6 5 4 36 36 H 0.96999 * 119.99892 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.46821 * 299.99480 * 10 9 7 38 38 H 1.09003 * 109.46925 * 59.99365 * 10 9 7 39 39 H 1.09005 * 109.46584 * 299.99944 * 11 10 9 40 40 H 1.08997 * 109.47310 * 59.99180 * 11 10 9 41 41 H 1.07996 * 118.17329 * 0.88160 * 13 12 11 42 42 H 1.09005 * 109.52344 * 108.93145 * 14 13 12 43 43 H 1.09008 * 109.52150 * 229.11352 * 14 13 12 44 44 H 0.96999 * 119.99850 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.77784 * 57.80761 * 24 15 14 46 46 H 1.08996 * 109.77915 * 178.62434 * 24 15 14 47 47 H 1.08997 * 109.31280 * 281.29011 * 25 12 11 48 48 H 1.08996 * 109.31205 * 40.71604 * 25 12 11 49 49 H 1.08003 * 120.34732 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 -0.0005 5 7 4.2538 0.0271 -0.0005 6 6 5.7187 0.0439 -0.0017 7 6 6.2199 0.0496 -1.4229 8 8 5.4311 0.0400 -2.3441 9 7 7.5447 0.0642 -1.6702 10 6 8.0319 0.0703 -3.0518 11 6 9.5618 0.0877 -3.0531 12 6 10.0630 0.0933 -4.4743 13 6 10.3442 1.2384 -5.0086 14 6 10.8348 1.4009 -6.4201 15 7 11.1824 0.0808 -6.9654 16 6 12.3216 -0.1094 -7.7011 17 1 12.7662 -1.0916 -7.7638 18 6 12.9046 0.9603 -8.3664 19 7 12.2236 2.0715 -8.5498 20 14 14.6560 0.8226 -9.0013 21 1 14.7434 -0.2957 -9.9744 22 1 15.0416 2.0917 -9.6691 23 1 15.5757 0.5628 -7.8646 24 6 10.2546 -1.0296 -6.6871 25 6 10.2064 -1.2286 -5.1679 26 6 3.6016 -1.1509 -0.0005 27 8 4.2311 -2.1968 -0.0010 28 6 2.1965 -1.1770 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6824 2.1485 -0.0004 33 1 4.1104 2.1341 -0.0009 34 1 6.0723 0.9380 0.5118 35 1 6.0926 -0.8419 0.5120 36 1 8.1755 0.0715 -0.9334 37 1 7.6780 -0.8234 -3.5657 38 1 7.6583 0.9564 -3.5649 39 1 9.9153 0.9816 -2.5392 40 1 9.9357 -0.7982 -2.5398 41 1 10.2198 2.1263 -4.4065 42 1 10.0506 1.8515 -7.0287 43 1 11.7165 2.0419 -6.4277 44 1 12.6312 2.8191 -9.0144 45 1 9.2614 -0.7832 -7.0623 46 1 10.6151 -1.9401 -7.1656 47 1 11.1242 -1.7128 -4.8347 48 1 9.3559 -1.8620 -4.9160 49 1 1.6681 -2.1189 -0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161375930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:25 Heat of formation + Delta-G solvation = -26.332929 kcal Electronic energy + Delta-G solvation = -29026.647192 eV Core-core repulsion = 24953.970009 eV Total energy + Delta-G solvation = -4072.677183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.52302 -40.60511 -39.46754 -38.10967 -36.87163 -36.18435 -35.16969 -33.23882 -31.70810 -31.41558 -30.68047 -29.96579 -28.03869 -26.78144 -24.69502 -24.66178 -24.00485 -22.73190 -22.48621 -21.71560 -19.48181 -18.78529 -18.53799 -18.48387 -17.58754 -17.09350 -17.01935 -16.70190 -16.63989 -16.28762 -15.76984 -15.55805 -15.25861 -15.18570 -15.08906 -14.96863 -14.74707 -14.33116 -14.17970 -13.93891 -13.59539 -13.41444 -13.34704 -13.22713 -13.01533 -12.89706 -12.83850 -12.77938 -12.58560 -12.46453 -12.38834 -12.21337 -11.91396 -11.69639 -11.40486 -11.19091 -11.09830 -10.68815 -10.59348 -10.21450 -9.50402 -8.99291 -8.76499 -7.89079 -5.31464 -0.12894 0.91103 1.34989 1.44207 1.46172 1.48638 1.52652 1.55646 2.16521 2.50371 2.69438 3.27390 3.56963 3.64736 3.67957 3.74214 3.88233 3.94722 4.06278 4.10441 4.10954 4.17936 4.27132 4.34109 4.40390 4.52754 4.55376 4.66296 4.78699 4.82324 4.83138 4.88232 4.90166 4.94705 5.05592 5.10099 5.15850 5.21493 5.24091 5.32682 5.40013 5.48850 5.49084 5.59454 5.65388 5.85691 6.04283 6.27167 6.32413 6.41855 6.95645 7.11550 7.12174 7.81742 8.36841 9.19358 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.001645 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.576640 B =17019.320431 C =17180.957587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.073 3.927 7 C 0.494 3.506 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.134 3.866 11 C -0.077 4.077 12 C -0.124 4.124 13 C -0.170 4.170 14 C 0.205 3.795 15 N -0.614 5.614 16 C -0.261 4.261 17 H 0.070 0.930 18 C -0.055 4.055 19 N -0.941 5.941 20 Si 0.972 3.028 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.277 1.277 24 C 0.135 3.865 25 C -0.088 4.088 26 C 0.502 3.498 27 O -0.612 6.612 28 C -0.294 4.294 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.205 0.795 34 H 0.181 0.819 35 H 0.131 0.869 36 H 0.422 0.578 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.002 0.998 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.016 0.984 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.267 2.351 26.454 32.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.014 3.986 5 N -0.193 5.193 6 C -0.052 4.052 7 C 0.280 3.720 8 O -0.461 6.461 9 N -0.360 5.360 10 C 0.010 3.990 11 C -0.114 4.114 12 C -0.125 4.125 13 C -0.190 4.190 14 C 0.080 3.920 15 N -0.339 5.339 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.587 5.587 20 Si 0.800 3.200 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.203 1.203 24 C 0.010 3.990 25 C -0.127 4.127 26 C 0.308 3.692 27 O -0.500 6.500 28 C -0.315 4.315 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.199 0.801 33 H 0.221 0.779 34 H 0.198 0.802 35 H 0.149 0.851 36 H 0.260 0.740 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.020 0.980 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.325 1.816 25.711 32.215 hybrid contribution 1.212 -0.146 -0.929 1.534 sum -18.113 1.670 24.783 30.742 Atomic orbital electron populations 1.21043 0.88117 1.04889 1.03975 1.20646 0.98485 0.92173 0.85841 1.21070 0.92603 0.99755 1.12005 1.22711 0.94395 0.89746 0.91705 1.45083 1.08114 1.07385 1.58758 1.22057 0.78937 1.10192 0.93990 1.21342 0.82886 0.75613 0.92148 1.90763 1.56561 1.51024 1.47780 1.45772 1.06514 1.74232 1.09510 1.21164 0.94224 1.01191 0.82470 1.20798 0.92473 1.04581 0.93590 1.20576 1.01061 0.94621 0.96241 1.22837 1.00483 0.98158 0.97492 1.19381 0.96950 0.87106 0.88558 1.44413 1.23397 1.05737 1.60315 1.19507 1.00852 0.95886 1.22854 0.91246 1.25795 1.02797 0.97246 0.99149 1.70188 1.36890 1.05684 1.45972 0.85265 0.80067 0.76612 0.78047 1.20179 1.21913 1.20329 1.21174 0.92088 0.91124 0.94645 1.20740 1.01531 0.94991 0.95401 1.17483 0.90270 0.82742 0.78715 1.90900 1.70227 1.32238 1.56607 1.21911 0.91743 1.00762 1.17126 0.89398 0.90499 0.88275 0.80099 0.77865 0.80186 0.85128 0.73975 0.93380 0.92729 0.88985 0.89119 0.86404 0.98001 0.92495 0.94078 0.96586 0.92425 0.91290 0.90184 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.03 71.24 0.71 -0.17 16 2 C 0.03 0.45 5.89 -19.82 -0.12 0.33 16 3 C -0.23 -2.23 9.71 22.08 0.21 -2.01 16 4 C 0.14 1.45 10.28 83.42 0.86 2.31 16 5 N -0.48 -8.64 2.07 -655.07 -1.36 -10.00 16 6 C 0.07 0.93 5.81 85.63 0.50 1.42 16 7 C 0.49 10.45 7.89 87.66 0.69 11.14 16 8 O -0.58 -19.00 16.43 -3.04 -0.05 -19.05 16 9 N -0.71 -11.74 5.56 -463.05 -2.57 -14.31 16 10 C 0.13 3.09 5.66 86.38 0.49 3.58 16 11 C -0.08 -1.65 5.32 29.85 0.16 -1.49 16 12 C -0.12 -4.02 5.11 -15.14 -0.08 -4.09 16 13 C -0.17 -6.45 9.47 27.10 0.26 -6.20 16 14 C 0.21 10.30 5.23 85.42 0.45 10.75 16 15 N -0.61 -32.16 3.01 -703.02 -2.11 -34.27 16 16 C -0.26 -14.78 9.71 84.03 0.82 -13.96 16 17 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 18 C -0.06 -3.14 5.01 84.86 0.43 -2.72 16 19 N -0.94 -56.69 11.08 21.65 0.24 -56.45 16 20 Si 0.97 45.52 29.58 68.60 2.03 47.55 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.14 5.86 6.59 86.31 0.57 6.43 16 25 C -0.09 -3.01 5.95 29.72 0.18 -2.84 16 26 C 0.50 13.36 7.40 84.82 0.63 13.98 16 27 O -0.61 -21.53 16.64 -5.53 -0.09 -21.62 16 28 C -0.29 -6.39 9.65 22.40 0.22 -6.17 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 31 H 0.10 0.25 8.10 -2.38 -0.02 0.23 16 32 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.20 0.24 8.04 -2.91 -0.02 0.22 16 34 H 0.18 0.08 8.01 -2.39 -0.02 0.06 16 35 H 0.13 1.73 7.39 -2.38 -0.02 1.71 16 36 H 0.42 3.42 8.47 -92.71 -0.79 2.63 16 37 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.62 7.78 -2.38 -0.02 1.60 16 40 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 41 H 0.12 3.77 7.73 -2.91 -0.02 3.75 16 42 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.06 3.18 6.41 -2.38 -0.02 3.17 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 49 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -90.11 405.72 3.21 -86.90 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.17 Total: 10.96 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.96 Total: 10.30 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -5.80 Total: -115.04 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.14 Total: -40.67 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -90.11 3.21 -86.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161375930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.563 kcal (2) G-P(sol) polarization free energy of solvation -90.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds