Wall clock time and date at job start Wed Apr 1 2020 04:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37991 * 120.81827 * 2 1 4 4 C 1.39134 * 119.26586 * 179.73241 * 3 2 1 5 5 O 1.35498 * 119.52560 * 180.25454 * 4 3 2 6 6 N 1.32429 * 120.94491 * 0.55802 * 4 3 2 7 7 C 1.31646 * 121.80113 * 359.71766 * 6 4 3 8 8 C 1.50700 * 119.68721 * 180.02562 * 7 6 4 9 9 C 1.39563 * 120.62477 * 0.02562 * 7 6 4 10 10 C 1.47614 * 120.49547 * 180.02562 * 9 7 6 11 11 O 1.21586 * 119.99574 * 269.96957 * 10 9 7 12 12 N 1.34773 * 119.99973 * 89.97611 * 10 9 7 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46993 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.29449 * 117.69465 * 94.99811 * 15 14 13 17 17 C 1.50326 * 123.64870 * 180.85932 * 16 15 14 18 18 N 1.47007 * 109.16490 * 349.02140 * 17 16 15 19 19 C 1.36938 * 121.37499 * 222.96898 * 18 17 16 20 20 H 1.08001 * 119.99712 * 155.97394 * 19 18 17 21 21 C 1.38812 * 120.00143 * 335.97123 * 19 18 17 22 22 N 1.31615 * 119.99893 * 344.51701 * 21 19 18 23 23 Si 1.86801 * 119.99906 * 164.51207 * 21 19 18 24 24 H 1.48494 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46826 * 120.00527 * 23 21 19 26 26 H 1.48502 * 109.46799 * 239.99944 * 23 21 19 27 27 C 1.47337 * 117.25037 * 42.95014 * 18 17 16 28 28 C 1.49966 * 117.68785 * 274.74050 * 15 14 13 29 29 H 1.08998 * 109.47417 * 269.71755 * 1 2 3 30 30 H 1.08998 * 109.47005 * 149.72056 * 1 2 3 31 31 H 1.09000 * 109.47663 * 29.72298 * 1 2 3 32 32 H 1.08000 * 120.37104 * 359.97438 * 3 2 1 33 33 H 0.96705 * 113.99624 * 270.29595 * 5 4 3 34 34 H 1.09004 * 109.47194 * 269.98038 * 8 7 6 35 35 H 1.09002 * 109.47170 * 29.97540 * 8 7 6 36 36 H 1.08996 * 109.47363 * 149.97846 * 8 7 6 37 37 H 0.96994 * 120.00188 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47275 * 300.00048 * 13 12 10 39 39 H 1.08996 * 109.46971 * 60.00404 * 13 12 10 40 40 H 1.09008 * 109.46653 * 300.00295 * 14 13 12 41 41 H 1.08999 * 109.46735 * 59.99897 * 14 13 12 42 42 H 1.07994 * 118.17654 * 0.87594 * 16 15 14 43 43 H 1.09007 * 109.52491 * 108.92610 * 17 16 15 44 44 H 1.08996 * 109.52236 * 229.11514 * 17 16 15 45 45 H 0.96997 * 120.00097 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.78004 * 57.80908 * 27 18 17 47 47 H 1.09003 * 109.77781 * 178.61821 * 27 18 17 48 48 H 1.09004 * 109.31501 * 281.28647 * 28 15 14 49 49 H 1.09002 * 109.32241 * 40.71570 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6048 1.1474 0.0057 5 8 4.3042 2.3079 0.0109 6 7 4.2547 -0.0064 0.0000 7 6 3.6204 -1.1600 -0.0057 8 6 4.4080 -2.4448 -0.0115 9 6 2.2255 -1.2043 -0.0064 10 6 1.5172 -2.4994 -0.0122 11 8 1.2254 -3.0279 -1.0676 12 7 1.1938 -3.0958 1.1523 13 6 0.4903 -4.3809 1.1464 14 6 0.2451 -4.8346 2.5870 15 6 -0.4780 -6.1568 2.5810 16 6 0.2351 -7.2329 2.6765 17 6 -0.3445 -8.6199 2.6652 18 7 -1.8060 -8.5333 2.7972 19 6 -2.4989 -9.3800 3.6208 20 1 -3.4627 -9.0864 4.0096 21 6 -1.9624 -10.6157 3.9559 22 7 -0.9568 -11.1063 3.2628 23 14 -2.6675 -11.5820 5.3906 24 1 -3.7847 -10.8175 6.0010 25 1 -3.1717 -12.8917 4.9051 26 1 -1.6070 -11.8053 6.4058 27 6 -2.4946 -7.4977 2.0072 28 6 -1.9734 -6.1327 2.4708 29 1 -0.3634 -0.0051 1.0276 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3634 0.8924 -0.5095 32 1 1.6935 2.1314 -0.0004 33 1 4.5069 2.6489 -0.8710 34 1 4.5980 -2.7499 -1.0405 35 1 5.3567 -2.2917 0.5031 36 1 3.8392 -3.2220 0.4988 37 1 1.4268 -2.6743 1.9942 38 1 -0.4648 -4.2699 0.6333 39 1 1.0965 -5.1245 0.6291 40 1 1.2002 -4.9454 3.1005 41 1 -0.3612 -4.0908 3.1039 42 1 1.3059 -7.1285 2.7697 43 1 -0.0921 -9.1126 1.7261 44 1 0.0633 -9.1919 3.4986 45 1 -0.5817 -11.9696 3.4971 46 1 -2.2799 -7.6383 0.9478 47 1 -3.5696 -7.5578 2.1776 48 1 -2.4027 -5.8901 3.4429 49 1 -2.2697 -5.3716 1.7490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161914916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:27 Heat of formation + Delta-G solvation = -12.954572 kcal Electronic energy + Delta-G solvation = -29400.636988 eV Core-core repulsion = 25328.539934 eV Total energy + Delta-G solvation = -4072.097054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.35864 -39.62600 -37.98223 -37.53143 -35.49138 -34.76721 -33.62325 -32.30777 -31.32437 -29.87050 -28.96590 -28.51794 -27.94971 -25.47649 -24.10717 -22.98927 -22.46800 -21.78807 -21.11277 -20.80219 -18.91205 -18.06117 -17.66351 -17.59999 -16.52652 -16.12160 -15.70985 -15.42012 -14.97659 -14.84408 -14.61420 -14.11442 -14.02699 -13.97812 -13.77864 -13.63817 -13.53819 -13.40059 -13.11934 -12.75533 -12.64263 -12.55175 -12.31813 -12.24135 -12.07755 -12.03666 -11.60613 -11.44151 -11.05132 -10.92901 -10.75063 -10.51626 -10.29023 -10.22972 -10.02925 -9.85774 -9.81449 -9.55291 -9.27228 -9.24451 -8.66392 -7.94079 -6.72895 -5.78978 -3.17718 0.30053 0.65925 2.26188 2.72833 2.85473 3.03634 3.26367 3.37222 3.44806 3.46909 3.97313 4.04256 4.33524 4.49468 4.54674 4.71008 4.84889 5.00718 5.05624 5.07110 5.08504 5.14723 5.23275 5.24309 5.39418 5.40990 5.50763 5.53773 5.61144 5.67064 5.67534 5.76109 5.94903 5.96971 6.00390 6.11936 6.18565 6.24260 6.37632 6.54544 6.77823 6.89848 6.95637 7.18611 7.22834 7.32352 7.39888 7.40304 7.75200 7.87408 7.90202 8.39023 9.20544 9.83398 10.41896 11.31402 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.001819 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.567150 B =15390.244981 C =15810.441304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.013 3.987 3 C -0.197 4.197 4 C 0.333 3.667 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.196 3.804 8 C -0.113 4.113 9 C -0.193 4.193 10 C 0.570 3.430 11 O -0.525 6.525 12 N -0.720 5.720 13 C 0.123 3.877 14 C -0.092 4.092 15 C -0.143 4.143 16 C -0.145 4.145 17 C 0.196 3.804 18 N -0.596 5.596 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.003 4.003 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.143 3.857 28 C -0.091 4.091 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.091 0.909 45 H 0.253 0.747 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 26.109 -6.269 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.005 3.995 3 C -0.218 4.218 4 C 0.154 3.846 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.058 3.942 8 C -0.170 4.170 9 C -0.198 4.198 10 C 0.354 3.646 11 O -0.401 6.401 12 N -0.371 5.371 13 C 0.000 4.000 14 C -0.129 4.129 15 C -0.144 4.144 16 C -0.165 4.165 17 C 0.071 3.929 18 N -0.319 5.319 19 C -0.374 4.374 20 H 0.086 0.914 21 C -0.200 4.200 22 N -0.554 5.554 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.016 3.984 28 C -0.130 4.130 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.724 25.554 -6.398 27.750 hybrid contribution -0.804 -0.055 0.678 1.053 sum 7.919 25.499 -5.721 27.306 Atomic orbital electron populations 1.20969 0.89166 1.04406 1.03740 1.20217 0.97036 0.90812 0.91402 1.21894 0.93741 0.99407 1.06776 1.19261 0.87052 0.85067 0.93196 1.84721 1.75988 1.33944 1.34214 1.67007 1.41857 0.97837 1.15993 1.21066 0.89124 0.93219 0.90831 1.20886 1.00516 0.91387 1.04256 1.20711 0.94880 0.94396 1.09840 1.17853 0.78582 0.83834 0.84311 1.90857 1.53560 1.64809 1.30872 1.46168 1.59300 1.23503 1.08167 1.21530 0.97116 0.83279 0.98069 1.20914 1.00329 0.97040 0.94652 1.20210 0.95468 0.92706 1.06037 1.23130 0.98365 0.97607 0.97354 1.19712 0.83354 0.88829 1.01019 1.44141 1.01645 1.36694 1.49405 1.19225 1.02961 0.94886 1.20306 0.91360 1.24993 0.99228 0.96165 0.99644 1.70024 1.27701 1.18545 1.39176 0.86190 0.78311 0.79757 0.82342 1.20334 1.21763 1.21626 1.20992 0.95917 0.87715 0.93760 1.20791 0.92308 0.99412 1.00476 0.89530 0.90239 0.90078 0.83529 0.73767 0.89250 0.89477 0.90201 0.76492 0.90994 0.90936 0.91454 0.91424 0.89043 0.94384 0.89137 0.93681 0.95790 0.92574 0.91930 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 9.69 36.01 0.35 -0.50 16 2 C 0.01 0.11 5.95 -103.96 -0.62 -0.51 16 3 C -0.20 -1.50 9.72 -39.34 -0.38 -1.88 16 4 C 0.33 3.02 7.74 -16.96 -0.13 2.89 16 5 O -0.48 -3.51 13.55 -18.19 -0.25 -3.76 16 6 N -0.51 -5.47 10.28 -9.20 -0.09 -5.57 16 7 C 0.20 2.03 6.82 -82.18 -0.56 1.47 16 8 C -0.11 -1.00 9.78 36.01 0.35 -0.64 16 9 C -0.19 -1.97 5.65 -104.83 -0.59 -2.56 16 10 C 0.57 6.64 4.32 -12.44 -0.05 6.59 16 11 O -0.53 -8.19 17.11 5.29 0.09 -8.10 16 12 N -0.72 -7.10 5.55 -61.32 -0.34 -7.44 16 13 C 0.12 1.45 5.66 -4.04 -0.02 1.42 16 14 C -0.09 -1.10 5.32 -27.88 -0.15 -1.25 16 15 C -0.14 -2.37 5.11 -100.99 -0.52 -2.88 16 16 C -0.14 -2.72 9.47 -35.78 -0.34 -3.06 16 17 C 0.20 4.66 5.23 -5.10 -0.03 4.63 16 18 N -0.60 -14.91 3.01 -173.56 -0.52 -15.44 16 19 C -0.24 -6.69 9.71 -15.06 -0.15 -6.83 16 20 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 21 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 22 N -0.91 -26.24 11.08 55.49 0.61 -25.63 16 23 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.14 2.96 6.59 -3.43 -0.02 2.94 16 28 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.68 7.18 -51.93 -0.37 0.30 16 31 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.40 0.90 9.06 45.56 0.41 1.31 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.69 7.07 -51.93 -0.37 0.33 16 37 H 0.40 3.03 8.46 -40.82 -0.35 2.68 16 38 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.76 7.78 -51.92 -0.40 0.35 16 41 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 42 H 0.09 1.51 7.73 -52.49 -0.41 1.11 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -34.22 404.50 -9.39 -43.61 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.84 Total: 1.64 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.11 Total: -2.05 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.34 Total: -54.07 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.16 Total: -11.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.22 -9.39 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161914916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.656 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds